Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.2e-93 344.7 181 100.0
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 1.3e-91 339.7 183 98.9
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 9.4e-85 317.0 180 91.7
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 8.8e-83 310.5 180 92.8
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.4e-79 298.5 182 87.4
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 5.0e-62 241.5 174 72.4
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.0e-47 193.0 176 67.6
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.8e-43 179.9 186 62.4
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 3.0e-43 179.1 175 65.1
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 8.9e-35 151.0 146 56.2
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 2.0e-34 149.8 138 52.9
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 3.4e-34 149.1 150 57.3
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 4.4e-34 148.7 139 58.3
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 4.4e-34 148.7 149 54.4
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 4.4e-34 148.7 142 56.3
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 9.8e-34 147.5 157 55.4
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 3.7e-33 145.6 141 58.9
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 8.3e-33 144.4 142 59.2
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 3.2e-32 142.5 138 58.7
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 5.4e-32 141.7 151 51.0
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 5.4e-32 141.7 134 57.5
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 5.4e-32 141.7 134 57.5
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 7.0e-32 141.4 143 49.0
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 9.2e-32 141.0 137 54.0
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 1.6e-31 140.2 149 51.0
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 2.0e-31 139.8 162 52.5
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.0e-31 139.8 133 57.9
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.3e-30 137.1 173 45.7
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 2.3e-30 136.3 124 59.7
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 6.6e-30 134.8 133 57.9
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 6.6e-30 134.8 153 52.3
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 8.6e-30 134.4 138 47.8
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 8.6e-30 134.4 140 53.6
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 7.3e-29 131.3 151 51.7
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 7.3e-29 131.3 143 53.1
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 2.8e-28 129.4 157 50.3
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 2.8e-28 129.4 140 54.3
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.7e-28 128.6 157 49.0
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 4.7e-28 128.6 164 44.5
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 4.7e-28 128.6 168 47.6
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 6.2e-28 128.3 151 50.3
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.4e-27 127.1 123 57.7
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.3e-27 126.3 146 47.9
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.0e-27 125.6 156 48.7
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 6.8e-27 124.8 146 48.6
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 6.8e-27 124.8 148 49.3
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.5e-26 123.6 145 47.6
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.0e-26 123.2 161 44.1
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 2.0e-26 123.2 140 51.4
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.0e-26 123.2 146 47.3
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.6e-26 122.9 143 49.0
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.4e-26 122.5 125 53.6
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.4e-26 122.5 143 49.0
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.4e-26 122.1 143 49.0
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 5.8e-26 121.7 145 51.0
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 9.8e-26 120.9 138 48.6
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 9.8e-26 120.9 150 48.7
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.7e-25 120.2 142 48.6
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.2e-25 119.8 161 42.2
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 4.9e-25 118.6 139 47.5
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 4.9e-25 118.6 147 47.6
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 6.4e-25 118.2 141 51.1
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 8.3e-25 117.9 146 47.3
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.1e-24 117.5 138 48.6
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 1.1e-24 117.5 143 50.3
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.4e-24 117.1 146 47.3
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 3.2e-24 115.9 137 48.2
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 5.4e-24 115.2 147 46.3
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 9.2e-24 114.4 147 45.6
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.2e-23 114.0 152 42.8
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.2e-23 114.0 139 44.6
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.6e-23 113.6 142 46.5
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.6e-23 113.6 101 59.4
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.7e-23 112.8 145 44.1
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 2.7e-23 112.8 142 46.5
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 4.6e-23 112.1 149 43.0
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 1.7e-22 110.2 154 44.8
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 3.0e-22 109.4 120 45.8
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 5.1e-22 108.6 156 41.7
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 5.1e-22 108.6 159 41.5
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 6.6e-22 108.2 129 48.1
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 1.1e-21 107.5 123 48.8
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.9e-21 106.7 107 53.3
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 3.3e-21 105.9 140 44.3
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 4.3e-21 105.5 147 42.2
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 7.3e-21 104.8 142 44.4
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 7.3e-21 104.8 130 46.2
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 7.3e-21 104.8 130 46.2
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 9.5e-21 104.4 142 44.4
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.8e-20 102.8 124 46.8
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 6.2e-20 101.7 153 41.2
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 8.1e-20 101.3 138 44.2
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 8.1e-20 101.3 153 41.2
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 8.1e-20 101.3 147 41.5
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.1e-19 100.9 146 41.8
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.1e-19 100.9 155 40.0
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.1e-19 100.9 127 46.5
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 1.1e-19 100.9 158 38.6
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.4e-19 100.5 131 44.3
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 1.8e-19 100.1 151 39.7
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.8e-19 100.1 146 41.1
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 4.0e-19 99.0 131 43.5
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 4.0e-19 99.0 153 39.2
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 5.2e-19 98.6 108 49.1
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 5.2e-19 98.6 125 44.8
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 5.2e-19 98.6 129 41.1
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 6.8e-19 98.2 147 40.8
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 8.9e-19 97.8 130 41.5
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.2e-18 97.4 148 41.2
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 1.5e-18 97.1 134 44.0
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.5e-18 97.1 146 39.7
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 2.0e-18 96.7 150 40.0
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.0e-18 96.7 154 39.6
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 2.0e-18 96.7 150 40.0
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.0e-18 96.7 154 39.6
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.0e-18 96.7 154 39.6
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 2.0e-18 96.7 150 40.0
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.4e-18 95.9 128 46.1
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 5.8e-18 95.1 133 42.1
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 1.7e-17 93.6 146 39.0
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 2.9e-17 92.8 130 40.0
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 4.9e-17 92.0 136 36.8
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.1e-16 90.9 133 41.4
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.4e-16 90.5 140 37.9
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.9e-16 90.1 140 37.9
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.9e-16 90.1 115 48.7
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 5.4e-16 88.6 140 37.1
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 5.4e-16 88.6 140 37.1
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 6.0e-15 85.1 97 47.4
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 6.6e-14 81.6 126 38.1
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.5e-13 79.7 136 32.4
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 5.6e-13 78.6 137 38.7
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.6e-12 77.0 79 54.4
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 4.7e-12 75.5 75 53.3
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.1e-11 74.3 145 33.8
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.4e-11 73.2 61 59.0
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 2.6e-10 69.7 141 33.3
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 5.8e-10 68.6 118 37.3
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 9.9e-10 67.8 112 38.4
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.9e-08 63.5 104 37.5
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 2.4e-08 63.2 118 33.9
Zm00001eb309990 Zea mays HOM05D065992 ORTHO05D037126 5.4e-08 62.0 116 34.5
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.2e-07 60.8 144 28.5
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 1.6e-07 60.5 89 37.1
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 3.5e-07 59.3 130 35.4
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 6.0e-07 58.5 89 37.1
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 7.8e-07 58.2 134 31.3
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 1.0e-06 57.8 119 33.6
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.3e-06 57.4 129 31.0
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.3e-06 56.6 142 29.6
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.0e-06 56.2 133 31.6
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 3.9e-06 55.8 139 29.5
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 5.1e-06 55.5 114 32.5
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 8.7e-06 54.7 129 29.5
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 8.7e-06 54.7 117 31.6
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 8.7e-06 54.7 88 34.1
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 8.7e-06 54.7 153 31.4
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 8.7e-06 54.7 136 27.2
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 8.7e-06 54.7 121 33.9
HPP92_007373 Vanilla planifolia HOM05D005336 ORTHO05D006511 8.7e-06 54.7 54 48.1
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 8.7e-06 54.7 103 34.0


User provided reference genes

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