Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-49 198.0 96 100.0
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-44 183.0 89 98.9
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-33 145.6 97 76.3
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-33 144.8 97 75.3
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 2.9e-32 141.7 97 73.2
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-30 136.3 90 76.7
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.9e-23 112.5 97 66.0
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-22 109.8 98 63.3
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.6e-22 107.8 98 62.2
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.2e-19 99.8 99 57.6
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 3.6e-19 98.2 97 58.8
FAN08G0703 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.1e-18 95.1 88 62.5
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 5.2e-18 94.4 101 53.5
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-17 92.4 87 57.5
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-17 92.4 87 57.5
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 4.4e-17 91.3 95 51.6
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 5.8e-17 90.9 95 56.8
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.3e-16 89.7 97 50.5
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.4e-15 85.5 98 50.0
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 3.2e-15 85.1 95 47.4
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.2e-15 85.1 94 48.9
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.4e-15 84.3 98 49.0
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 9.2e-15 83.6 97 47.4
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.7e-14 82.0 95 50.5
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.6e-14 81.3 98 48.0
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 6.0e-14 80.9 82 53.7
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.0e-14 80.9 89 53.9
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.0e-14 80.9 95 49.5
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 7.8e-14 80.5 60 66.7
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.3e-13 79.7 94 52.1
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.7e-13 79.3 97 48.5
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.3e-13 79.0 98 43.9
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-13 78.6 88 53.4
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 6.6e-13 77.4 83 49.4
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.5e-12 76.3 95 46.3
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-12 76.3 91 47.3
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.5e-12 76.3 97 43.3
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.9e-12 75.9 99 47.5
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 2.5e-12 75.5 83 49.4
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 3.3e-12 75.1 95 42.1
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 4.3e-12 74.7 90 50.0
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.3e-12 74.7 90 50.0
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.6e-12 74.3 82 52.4
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.6e-12 74.3 104 47.1
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.6e-12 74.3 94 43.6
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 7.3e-12 73.9 90 44.4
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 7.3e-12 73.9 93 51.6
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.3e-12 73.9 86 51.2
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 7.3e-12 73.9 93 45.2
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 7.3e-12 73.9 93 45.2
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.2e-11 73.2 93 41.9
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.2e-11 73.2 97 41.2
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 2.1e-11 72.4 93 45.2
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 2.8e-11 72.0 96 44.8
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 2.8e-11 72.0 54 64.8
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 3.6e-11 71.6 96 43.8
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 3.6e-11 71.6 84 51.2
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.6e-11 71.6 93 37.6
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 4.7e-11 71.2 97 45.4
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 4.7e-11 71.2 93 45.2
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 6.2e-11 70.9 50 66.0
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.1e-11 70.5 93 36.6
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.4e-10 69.7 87 43.7
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.4e-10 68.9 93 41.9
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.4e-10 68.9 78 48.7
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.4e-10 68.9 95 44.2
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.4e-10 68.9 97 41.2
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 4.0e-10 68.2 103 45.6
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.0e-10 68.2 93 43.0
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.2e-10 67.8 96 41.7
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.9e-10 67.0 94 42.6
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.9e-10 67.0 95 40.0
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 8.9e-10 67.0 50 66.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 8.9e-10 67.0 50 66.0
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 2.0e-09 65.9 51 60.8
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.0e-09 65.9 91 42.9
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.6e-09 65.5 90 38.9
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 3.4e-09 65.1 94 41.5
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.8e-09 64.3 50 54.0
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 7.6e-09 63.9 94 38.3
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 9.9e-09 63.5 90 41.1
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 9.9e-09 63.5 43 72.1
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 1.3e-08 63.2 98 36.7
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 90 40.0
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.3e-08 63.2 94 38.3
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 2.2e-08 62.4 96 38.5
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 2.2e-08 62.4 86 39.5
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.2e-08 62.4 80 41.2
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.9e-08 62.0 87 42.5
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 2.9e-08 62.0 96 39.6
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 3.8e-08 61.6 92 37.0
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.8e-08 61.6 50 56.0
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 3.8e-08 61.6 92 41.3
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.8e-08 61.6 95 40.0
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.8e-08 61.6 50 56.0
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.9e-08 61.2 102 36.3
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 6.4e-08 60.8 51 52.9
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 6.4e-08 60.8 92 39.1
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.4e-08 60.8 93 36.6
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 6.4e-08 60.8 95 35.8
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.4e-08 60.5 94 35.1
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-07 60.1 92 38.0
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-07 58.9 93 39.8
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-07 58.9 93 39.8
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 2.4e-07 58.9 88 42.0
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 2.4e-07 58.9 88 42.0
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.4e-07 58.9 95 36.8
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 2.4e-07 58.9 107 35.5
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.2e-07 58.5 88 35.2
FAN20G2034 Fragaria x ananassa HOM05D001506 ORTHO05D000455 3.2e-07 58.5 34 73.5
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 3.2e-07 58.5 87 39.1
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 4.2e-07 58.2 56 50.0
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 4.2e-07 58.2 94 37.2
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 5.4e-07 57.8 61 45.9
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.1e-07 57.4 51 51.0
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 7.1e-07 57.4 53 50.9
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 7.1e-07 57.4 50 48.0
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 9.3e-07 57.0 88 35.2
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 9.3e-07 57.0 88 40.9
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-06 56.6 92 34.8
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-06 56.2 50 52.0
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-06 56.2 93 38.7
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.6e-06 56.2 101 34.7
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.1e-06 55.8 90 32.2
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.1e-06 55.8 95 37.9
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 2.7e-06 55.5 80 41.2
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 3.5e-06 55.1 50 54.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 3.5e-06 55.1 86 38.4
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 3.5e-06 55.1 92 40.2
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 3.5e-06 55.1 50 48.0
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 6.0e-06 54.3 99 35.4
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 6.0e-06 54.3 96 37.5


User provided reference genes

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