Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 5.6e-95 350.9 172 100.0
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 6.1e-94 347.4 172 98.8
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 2.2e-75 285.8 168 84.5
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 5.6e-71 271.2 172 78.5
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 4.1e-66 255.0 172 72.1
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 4.1e-66 255.0 171 71.9
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 7.8e-65 250.8 172 71.5
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 1.6e-62 243.0 172 68.0
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 2.4e-61 239.2 172 68.0
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 1.7e-59 233.0 172 65.7
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 2.9e-59 232.3 172 65.1
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.1e-58 230.3 172 64.5
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.1e-58 230.3 172 64.5
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 4.2e-58 228.4 186 62.9
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 9.3e-58 227.3 172 64.0
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 1.6e-57 226.5 172 64.0
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 2.1e-57 226.1 172 64.0
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 2.1e-57 226.1 171 63.7
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 2.7e-57 225.7 172 61.6
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 2.7e-57 225.7 172 62.8
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 3.5e-57 225.3 172 63.4
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 3.5e-57 225.3 172 64.0
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 6.0e-57 224.6 172 63.4
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 7.8e-57 224.2 172 63.4
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 1.0e-56 223.8 172 62.2
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.7e-56 223.0 172 63.4
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 1.7e-56 223.0 172 62.8
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 5.1e-56 221.5 172 62.2
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 5.1e-56 221.5 172 62.2
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 5.1e-56 221.5 160 68.8
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 5.1e-56 221.5 172 62.8
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 6.6e-56 221.1 172 62.2
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 6.6e-56 221.1 172 62.8
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 1.5e-55 219.9 172 64.0
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 1.9e-55 219.5 190 58.4
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 2.5e-55 219.2 172 59.9
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 2.5e-55 219.2 169 63.3
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 2.5e-55 219.2 172 61.0
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 3.3e-55 218.8 172 62.2
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 4.3e-55 218.4 237 51.5
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 5.6e-55 218.0 172 62.2
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 2.8e-54 215.7 172 62.8
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 3.6e-54 215.3 170 61.8
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 3.6e-54 215.3 178 62.4
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 4.8e-54 214.9 172 59.9
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 6.2e-54 214.5 172 62.8
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.1e-53 213.8 172 62.2
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 1.1e-53 213.8 172 59.3
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 1.1e-53 213.8 172 61.0
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 1.4e-53 213.4 172 59.3
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.8e-53 213.0 170 58.8
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 3.1e-53 212.2 173 60.1
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 3.1e-53 212.2 173 60.1
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 4.0e-53 211.8 172 65.1
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 5.3e-53 211.5 172 58.7
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 5.3e-53 211.5 170 60.6
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 6.9e-53 211.1 172 59.9
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 1.2e-52 210.3 172 59.3
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 1.2e-52 210.3 172 59.9
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 1.2e-52 210.3 172 58.1
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 1.5e-52 209.9 172 59.9
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 2.6e-52 209.1 172 58.7
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 2.6e-52 209.1 170 60.0
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 3.4e-52 208.8 170 60.0
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 4.5e-52 208.4 172 59.3
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 5.8e-52 208.0 172 59.3
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 5.8e-52 208.0 170 57.1
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 7.6e-52 207.6 170 57.1
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 7.6e-52 207.6 169 58.0
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 9.9e-52 207.2 170 57.1
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 9.9e-52 207.2 172 59.3
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 1.3e-51 206.8 172 59.9
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 1.7e-51 206.5 172 58.7
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 1.7e-51 206.5 172 59.9
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 1.7e-51 206.5 172 59.9
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 3.8e-51 205.3 195 56.4
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 4.9e-51 204.9 172 57.6
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 6.4e-51 204.5 171 60.8
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 8.4e-51 204.1 172 58.1
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 2.4e-50 202.6 173 59.0
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 3.2e-50 202.2 173 57.8
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 4.2e-50 201.8 127 72.4
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 5.4e-50 201.4 172 57.0
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 1.1e-47 193.7 198 50.5
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 2.5e-47 192.6 172 53.5
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 3.3e-47 192.2 172 55.8
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 3.3e-47 192.2 148 62.8
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 4.3e-47 191.8 189 53.4
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 2.8e-46 189.1 173 54.9
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 6.2e-46 188.0 158 58.9
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 1.8e-45 186.4 168 51.8
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 1.7e-43 179.9 111 80.2
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 3.8e-43 178.7 144 59.0
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 1.2e-41 173.7 169 47.3
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 6.7e-40 167.9 104 75.0
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 9.3e-34 147.5 92 72.8
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 8.7e-32 141.0 143 45.5
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 5.7e-31 138.3 104 63.5
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.8e-29 133.3 172 44.2
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 1.5e-28 130.2 103 55.3
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.5e-23 113.6 105 54.3
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.3e-22 110.5 66 77.3
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 1.4e-21 107.1 169 30.2
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 1.5e-20 103.6 102 54.9
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 7.7e-20 101.3 65 72.3
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 3.8e-19 99.0 64 71.9
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 6.5e-19 98.2 121 47.9
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 2.1e-17 93.2 174 30.5
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 5.7e-15 85.1 69 65.2
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 8.2e-14 81.3 165 25.5
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 2.4e-13 79.7 101 39.6
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 3.1e-13 79.3 66 60.6
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 8.5e-11 71.2 61 50.8
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.6e-09 67.0 38 78.9
Eucgr.E01843 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.5e-07 60.5 74 37.8
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 1.3e-06 57.4 44 65.9


User provided reference genes

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