Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.6e-95 350.1 175 100.0
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.6e-95 350.1 175 100.0
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.7e-81 305.4 175 90.3
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.8e-80 302.8 175 88.6
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 8.8e-64 247.3 125 98.4
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.5e-58 228.0 185 72.4
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 3.8e-51 205.3 125 84.8
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 1.6e-36 156.8 100 80.0
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 3.3e-34 149.1 109 67.0
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 5.6e-34 148.3 116 69.8
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-33 147.1 108 67.6
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-33 147.1 107 66.4
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 8.0e-33 144.4 108 68.5
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.8e-32 143.3 76 88.2
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 5.2e-32 141.7 108 66.7
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 6.8e-32 141.4 111 66.7
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.0e-31 139.8 110 71.8
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 9.8e-31 137.5 106 67.0
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.1e-29 134.0 116 62.1
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 1.1e-29 134.0 80 78.8
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 1.4e-29 133.7 109 62.4
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.9e-29 133.3 116 60.3
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.4e-29 132.9 108 61.1
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.4e-29 132.9 108 61.1
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 4.1e-29 132.1 116 62.1
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.4e-29 131.7 108 61.1
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.6e-28 130.2 107 66.4
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 6.0e-28 128.3 72 86.1
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 5.0e-27 125.2 110 60.0
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 1.1e-26 124.0 117 57.3
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.5e-26 123.6 76 76.3
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.5e-26 123.6 84 70.2
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 1.5e-26 123.6 117 58.1
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 4.3e-26 122.1 76 77.6
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 5.6e-26 121.7 116 56.9
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 9.5e-26 120.9 77 76.6
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 9.5e-26 120.9 109 55.0
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 1.6e-25 120.2 99 62.6
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 1.6e-25 120.2 82 64.6
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 2.1e-25 119.8 94 64.9
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.7e-25 118.6 113 54.9
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 4.7e-25 118.6 88 68.2
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.1e-24 117.5 87 66.7
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 2.3e-24 116.3 72 75.0
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 2.3e-24 116.3 101 55.4
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 4.0e-24 115.5 95 58.9
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 5.2e-24 115.2 101 60.4
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 6.8e-24 114.8 68 75.0
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 8.9e-24 114.4 100 60.0
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 8.9e-24 114.4 100 60.0
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-23 114.0 98 57.1
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.4e-23 112.5 109 57.8
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.4e-23 112.1 117 50.4
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 4.4e-23 112.1 82 62.2
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 5.8e-23 111.7 97 57.7
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.8e-23 111.7 95 63.2
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 7.5e-23 111.3 113 54.9
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 9.8e-23 110.9 92 57.6
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.9e-22 108.6 77 62.3
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 8.3e-22 107.8 77 61.0
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 8.3e-22 107.8 81 61.7
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.1e-21 107.5 68 75.0
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.1e-21 107.5 78 64.1
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 1.4e-21 107.1 77 61.0
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 1.4e-21 107.1 78 64.1
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 2.4e-21 106.3 68 75.0
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 2.4e-21 106.3 68 76.5
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 3.2e-21 105.9 76 64.5
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 3.2e-21 105.9 74 63.5
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 5.4e-21 105.1 76 61.8
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 5.4e-21 105.1 123 50.4
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 5.4e-21 105.1 81 56.8
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 7.1e-21 104.8 73 63.0
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 7.1e-21 104.8 68 70.6
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 7.1e-21 104.8 92 54.3
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 9.2e-21 104.4 107 49.5
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 1.6e-20 103.6 97 52.6
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 6.0e-20 101.7 81 58.0
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 7.8e-20 101.3 85 58.8
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.0e-19 100.9 75 64.0
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.7e-19 100.1 87 59.8
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.7e-19 100.1 78 61.5
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-19 99.8 124 45.2
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.9e-19 99.0 85 57.6
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 3.9e-19 99.0 75 64.0
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 3.9e-19 99.0 81 63.0
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 5.1e-19 98.6 98 53.1
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 5.1e-19 98.6 72 63.9
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 6.6e-19 98.2 70 65.7
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 8.6e-19 97.8 73 58.9
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 8.6e-19 97.8 73 56.2
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.9e-18 96.7 95 49.5
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 2.5e-18 96.3 73 57.5
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 2.5e-18 96.3 73 57.5
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 2.5e-18 96.3 73 57.5
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 3.3e-18 95.9 72 65.3
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 7.3e-18 94.7 94 50.0
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 9.5e-18 94.4 81 58.0
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 2.1e-17 93.2 71 59.2
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 2.8e-17 92.8 94 45.7
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.8e-17 92.8 80 51.2
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 3.6e-17 92.4 90 47.8
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 4.7e-17 92.0 96 46.9
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 4.7e-17 92.0 96 46.9
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 4.7e-17 92.0 69 62.3
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 6.2e-17 91.7 67 61.2
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 1.4e-16 90.5 70 52.9
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 1.4e-16 90.5 90 47.8
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.4e-16 90.5 67 61.2
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.8e-16 90.1 94 45.7
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 1.8e-16 90.1 68 58.8
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.3e-16 89.7 70 54.3
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 2.3e-16 89.7 90 46.7
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 3.1e-16 89.4 67 59.7
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 3.1e-16 89.4 67 59.7
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 8.9e-16 87.8 67 59.7
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 9.9e-15 84.3 94 50.0
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.4e-13 79.7 94 48.9
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 2.4e-13 79.7 102 50.0
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.2e-12 77.4 70 58.6
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 3.9e-11 72.4 81 51.9
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 5.1e-11 72.0 54 64.8
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 4.3e-10 68.9 54 68.5
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 1.2e-09 67.4 47 66.0
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.4e-08 63.9 46 67.4
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.4e-08 63.2 74 47.3
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 6.8e-08 61.6 44 70.5
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.2e-07 60.8 39 74.4
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.5e-07 60.5 78 47.4
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 3.8e-06 55.8 46 56.5


User provided reference genes

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