Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 4.0e-199 698.0 373 100.0
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 3.4e-198 694.9 373 99.7
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.4e-196 689.5 373 99.2
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 3.2e-196 688.3 373 99.2
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 8.7e-186 653.7 373 94.4
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 2.2e-165 585.9 373 86.1
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 8.6e-109 397.9 385 61.3
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 6.6e-101 371.7 218 92.2
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 1.6e-99 367.1 384 57.6
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 5.1e-69 265.8 369 44.4
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 2.8e-67 260.0 377 44.8
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 3.1e-66 256.5 386 43.5
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 1.5e-65 254.2 384 45.8
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 1.5e-60 237.7 386 42.5
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 2.5e-60 236.9 400 43.0
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 5.6e-60 235.7 390 45.6
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 1.1e-58 231.5 391 42.7
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 5.8e-57 225.7 233 54.5
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 1.3e-56 224.6 379 43.3
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 8.4e-56 221.9 382 44.2
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 1.1e-55 221.5 234 50.9
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 1.2e-54 218.0 390 39.5
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 2.1e-54 217.2 282 46.5
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 7.9e-54 215.3 374 42.5
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 1.0e-53 214.9 282 46.5
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 3.0e-53 213.4 386 39.9
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 3.9e-53 213.0 374 40.4
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 6.7e-53 212.2 394 41.4
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 6.7e-53 212.2 235 48.9
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 8.7e-53 211.8 235 48.9
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 8.2e-51 205.3 379 38.8
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 8.2e-51 205.3 380 42.4
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 3.1e-50 203.4 387 40.8
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 5.3e-50 202.6 381 42.3
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 6.9e-50 202.2 373 40.8
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 1.2e-49 201.4 233 48.1
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 2.2e-48 197.2 275 45.8
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 6.1e-46 189.1 386 36.8
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 1.0e-45 188.3 184 59.8
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 1.0e-45 188.3 379 41.2
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 1.4e-45 188.0 413 34.6
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.8e-45 187.6 235 45.5
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 8.8e-45 185.3 210 50.0
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 1.5e-44 184.5 374 39.0
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 1.5e-44 184.5 368 37.8
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 1.7e-43 181.0 386 38.9
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 2.2e-43 180.6 251 44.6
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 1.1e-42 178.3 224 44.2
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 1.1e-42 178.3 397 38.0
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 1.4e-42 177.9 375 37.9
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 1.8e-42 177.6 308 40.3
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 3.4e-41 173.3 224 43.3
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 1.3e-40 171.4 346 38.4
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 2.2e-40 170.6 370 38.6
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 2.2e-40 170.6 518 32.4
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 3.8e-40 169.9 404 33.9
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 6.5e-40 169.1 268 42.2
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 8.5e-40 168.7 403 35.5
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 1.9e-39 167.5 351 39.0
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 1.9e-39 167.5 255 42.7
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 7.2e-39 165.6 314 38.5
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 1.2e-38 164.9 255 41.6
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 6.1e-38 162.5 235 44.7
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 6.1e-38 162.5 235 44.7
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 7.9e-38 162.2 235 43.4
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 7.9e-38 162.2 375 37.6
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 5.1e-37 159.5 334 38.6
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 6.7e-37 159.1 396 35.4
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 8.8e-37 158.7 205 47.8
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 2.6e-36 157.1 383 32.4
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 3.3e-36 156.8 305 39.0
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 3.3e-36 156.8 303 39.3
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 8.2e-35 152.1 387 35.1
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 1.4e-34 151.4 292 40.4
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 1.4e-34 151.4 441 31.1
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 2.4e-34 150.6 380 35.0
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 9.1e-34 148.7 337 37.7
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 4.5e-33 146.4 349 37.2
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 5.9e-33 146.0 354 37.0
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 5.0e-32 142.9 300 39.3
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 6.5e-32 142.5 282 37.6
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 3.0e-29 133.7 347 35.2
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 6.7e-29 132.5 282 38.3
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 1.3e-27 128.3 310 34.5
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 1.3e-27 128.3 163 45.4
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 6.3e-27 125.9 326 35.0
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 2.6e-25 120.6 150 45.3
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 6.5e-24 115.9 228 40.4
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 8.5e-24 115.5 217 42.4
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 2.3e-13 80.9 196 36.2
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 4.0e-13 80.1 228 34.2
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 2.2e-11 74.3 95 51.6
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.1e-10 72.0 217 32.7
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.0e-08 65.5 227 28.6
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 2.3e-08 64.3 227 32.2
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 5.0e-08 63.2 228 30.3
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 1.9e-07 61.2 231 29.9
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.9e-07 61.2 240 28.3
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 3.3e-07 60.5 273 28.6
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 3.3e-07 60.5 193 31.6
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 4.2e-07 60.1 270 25.9
SMO239G0125 Selaginella moellendorffii HOM05D007666 ORTHO05D009567 4.2e-07 60.1 231 30.7
AagrBONN_evm.TU.Sc2ySwM_368.250 Anthoceros agrestis HOM05D029953 ORTHO05D009567 5.5e-07 59.7 265 24.5
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 7.2e-07 59.3 163 33.1
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 4.7e-06 56.6 200 29.5


User provided reference genes

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