Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.4e-96 356.3 176 100.0
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 2.6e-95 352.1 176 98.9
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 3.7e-94 348.2 176 97.2
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.6e-92 342.0 176 95.5
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 3.8e-91 338.2 176 94.9
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 8.0e-73 277.3 176 81.8
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 3.7e-62 241.9 167 75.4
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 8.0e-57 224.2 174 70.1
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 2.2e-46 189.5 178 60.1
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 8.3e-46 187.6 175 58.3
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.9e-45 186.4 176 58.0
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 2.4e-45 186.0 174 58.6
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 9.2e-45 184.1 175 58.3
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 7.3e-42 174.5 170 58.8
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 4.7e-41 171.8 172 52.9
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 8.1e-41 171.0 150 62.0
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 1.1e-40 170.6 178 53.9
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 1.1e-40 170.6 178 53.9
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 3.1e-40 169.1 175 51.4
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 6.8e-40 167.9 176 54.5
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 1.2e-39 167.2 176 54.5
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 1.2e-39 167.2 176 55.7
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 2.6e-39 166.0 174 54.0
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 4.4e-39 165.2 176 54.0
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 5.8e-39 164.9 172 53.5
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.4e-37 160.2 175 53.7
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 5.4e-37 158.3 170 51.2
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 5.4e-37 158.3 177 51.4
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 1.6e-36 156.8 176 52.8
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 2.7e-36 156.0 169 50.9
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.5e-36 155.6 175 53.1
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 7.8e-36 154.5 174 50.6
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.0e-35 154.1 175 53.1
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 2.3e-35 152.9 172 51.7
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 2.3e-35 152.9 155 52.9
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 3.9e-35 152.1 168 53.0
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 6.6e-35 151.4 178 50.0
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 2.5e-34 149.4 165 52.1
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 4.3e-34 148.7 182 47.8
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 7.3e-34 147.9 175 52.0
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 9.5e-34 147.5 172 51.2
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 1.6e-33 146.7 165 52.7
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 4.7e-33 145.2 172 50.0
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 6.2e-33 144.8 172 48.8
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 6.2e-33 144.8 114 60.5
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 6.2e-33 144.8 174 50.6
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 8.1e-33 144.4 174 50.6
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 8.1e-33 144.4 220 45.5
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 1.1e-32 144.1 171 50.9
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 1.8e-32 143.3 174 47.7
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 1.8e-32 143.3 171 52.0
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 3.1e-32 142.5 144 54.2
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 5.2e-32 141.7 182 48.4
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 5.8e-31 138.3 174 47.7
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 2.2e-30 136.3 170 45.9
arahy.Tifrunner.gnm1.ann1.B4TR6Y Arachis hypogaea HOM05D005992 ORTHO05D007476 6.4e-30 134.8 175 47.4
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 1.1e-29 134.0 156 46.2
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 5.4e-29 131.7 151 47.7
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.2e-28 130.6 173 48.0
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 1.6e-28 130.2 153 45.1
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 3.5e-28 129.0 172 47.1
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.5e-28 129.0 142 52.8
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 1.7e-27 126.7 226 38.9
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 2.3e-27 126.3 165 47.9
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 2.3e-27 126.3 131 51.9
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 3.9e-27 125.6 151 49.0
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 6.6e-27 124.8 145 49.0
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 8.7e-27 124.4 134 50.0
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 1.1e-26 124.0 155 47.7
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.1e-26 124.0 173 46.2
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.9e-26 123.2 134 48.5
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 2.5e-26 122.9 183 44.8
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 9.6e-26 120.9 165 46.7
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.2e-25 120.6 129 54.3
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.2e-25 120.6 174 47.1
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 1.6e-25 120.2 178 42.1
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 1.6e-25 120.2 171 45.0
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 2.8e-25 119.4 210 40.0
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 3.6e-25 119.0 172 44.8
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 1.4e-24 117.1 151 49.7
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.4e-24 117.1 174 46.0
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 1.4e-24 117.1 173 46.2
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 1.8e-24 116.7 173 46.2
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 3.1e-24 115.9 146 47.9
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 9.0e-24 114.4 169 45.6
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 1.2e-23 114.0 104 57.7
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 4.4e-23 112.1 174 44.8
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 9.9e-23 110.9 213 38.0
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 2.2e-22 109.8 140 42.1
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 4.2e-21 105.5 139 46.0
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 5.4e-21 105.1 139 46.0
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 1.2e-20 104.0 141 46.8
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 2.1e-20 103.2 168 41.1
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 3.5e-20 102.4 156 42.3
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 6.0e-20 101.7 126 46.0
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 1.5e-18 97.1 152 40.8
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 3.3e-18 95.9 137 40.1
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 9.6e-18 94.4 152 38.8
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 2.8e-17 92.8 152 38.8
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 4.8e-17 92.0 156 39.1
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 6.9e-16 88.2 81 58.0
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 5.8e-15 85.1 152 35.5
Hma1.2p1_1756F.1_g301045 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 5.8e-15 85.1 107 45.8
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 7.6e-15 84.7 98 48.0
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 2.4e-13 79.7 152 36.2
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 2.4e-13 79.7 152 36.2
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 1.2e-12 77.4 75 49.3
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 6.0e-12 75.1 103 41.7
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.3e-11 73.9 153 32.7
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 2.3e-11 73.2 86 46.5
BcaC05g29553 Brassica carinata HOM05D005992 ORTHO05D007476 5.6e-10 68.6 121 37.2
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 9.6e-10 67.8 152 34.2
CiPaw.10G142500 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.6e-09 67.0 63 58.7
Aqoxy4G02934 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 2.8e-09 66.2 120 35.0
PGSC0003DMG400020300 Solanum tuberosum HOM05D005992 ORTHO05D007476 5.3e-08 62.0 92 43.5
Aa31LG5G18140 Aethionema arabicum HOM05D005992 ORTHO05D007476 1.2e-07 60.8 79 41.8
AT3G07580 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.2e-07 60.8 129 33.3
A09p04390 Brassica napus HOM05D005992 ORTHO05D007476 2.2e-06 56.6 41 58.5
BraA09t36076Z Brassica rapa HOM05D005992 ORTHO05D007476 2.2e-06 56.6 41 58.5
BcaC04g23782 Brassica carinata HOM05D005992 ORTHO05D007476 3.8e-06 55.8 69 46.4
C09p04700 Brassica napus HOM05D005992 ORTHO05D007476 3.8e-06 55.8 69 46.4


User provided reference genes

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