Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.5e-112 407.9 203 100.0
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.1e-94 350.1 186 95.2
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 5.8e-83 311.2 203 80.8
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 2.9e-74 282.3 202 70.3
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 3.1e-68 262.3 201 66.2
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 4.3e-62 241.9 199 61.3
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 4.7e-61 238.4 199 60.3
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 4.7e-61 238.4 202 65.8
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 6.2e-61 238.0 199 60.3
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 5.2e-60 235.0 203 63.5
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.4e-58 228.0 197 65.0
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 6.4e-58 228.0 201 60.2
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 7.1e-57 224.6 201 57.2
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.6e-56 223.4 203 59.6
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 1.0e-55 220.7 251 50.6
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.0e-55 219.2 198 63.6
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.5e-54 216.9 196 59.2
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 4.8e-53 211.8 200 55.5
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.8e-53 211.8 199 55.3
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 8.1e-53 211.1 197 54.8
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 1.4e-52 210.3 200 54.5
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 2.4e-52 209.5 200 54.5
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 3.1e-52 209.1 200 56.0
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 6.9e-52 208.0 200 55.0
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 9.0e-52 207.6 201 55.7
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 1.2e-51 207.2 202 52.5
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.2e-51 207.2 174 58.0
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.5e-51 206.8 200 54.5
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.5e-51 206.8 200 54.5
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 4.4e-51 205.3 201 55.2
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 5.8e-51 204.9 200 56.5
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 5.8e-51 204.9 198 54.0
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 5.8e-51 204.9 197 52.3
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 7.6e-51 204.5 201 55.2
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 7.6e-51 204.5 197 54.8
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 7.6e-51 204.5 201 53.2
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 7.6e-51 204.5 197 56.3
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.7e-50 203.4 200 53.5
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 2.9e-50 202.6 200 57.5
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 3.8e-50 202.2 201 53.2
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.9e-49 199.9 202 53.0
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 1.9e-49 199.9 117 82.1
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.2e-49 199.1 201 54.2
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 3.2e-49 199.1 197 54.8
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 5.4e-49 198.4 200 53.0
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 7.1e-49 198.0 201 51.7
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 9.3e-49 197.6 200 51.0
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 1.2e-48 197.2 200 52.5
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 1.2e-48 197.2 201 53.2
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 1.2e-48 197.2 197 54.3
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.6e-48 196.8 201 54.2
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 2.1e-48 196.4 200 52.0
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.5e-48 195.7 198 52.5
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 3.5e-48 195.7 198 52.5
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 6.0e-48 194.9 199 52.8
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 6.0e-48 194.9 196 55.6
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 3.9e-47 192.2 199 52.3
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 3.9e-47 192.2 198 52.0
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 8.7e-47 191.0 197 51.8
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 1.1e-46 190.7 197 52.3
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.1e-46 190.7 202 51.5
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 1.5e-46 190.3 146 65.8
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 1.5e-46 190.3 201 51.7
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.3e-46 189.1 199 50.8
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 3.3e-46 189.1 199 50.8
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 4.3e-46 188.7 199 49.7
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 7.3e-46 188.0 199 51.8
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 9.6e-46 187.6 199 52.8
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 9.6e-46 187.6 199 50.3
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 1.3e-45 187.2 202 50.5
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.6e-45 186.8 199 51.8
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.1e-45 186.4 202 51.5
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 3.6e-45 185.7 199 49.7
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 4.8e-45 185.3 199 50.8
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 4.8e-45 185.3 199 49.7
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 8.1e-45 184.5 198 51.5
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.4e-44 183.7 199 49.2
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.8e-44 183.3 199 50.8
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.4e-44 183.0 198 51.0
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 3.1e-44 182.6 201 50.2
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 4.0e-44 182.2 197 51.3
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 9.0e-44 181.0 197 51.8
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.2e-43 180.6 202 49.0
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 2.0e-43 179.9 199 50.8
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 2.6e-43 179.5 202 50.0
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 7.6e-43 177.9 199 50.3
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.7e-42 176.8 198 48.5
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 3.8e-42 175.6 197 49.7
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 6.4e-42 174.9 199 48.7
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 6.4e-42 174.9 197 48.7
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 6.4e-42 174.9 143 60.8
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.4e-41 173.7 202 46.5
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 1.2e-40 170.6 198 48.0
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 7.9e-40 167.9 197 47.7
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.1e-38 164.1 161 52.2
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 1.1e-38 164.1 227 41.4
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 3.3e-38 162.5 178 50.0
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.6e-37 160.2 196 44.9
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 4.8e-37 158.7 161 50.3
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 6.2e-37 158.3 154 52.6
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.1e-36 157.5 198 44.9
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 9.0e-36 154.5 199 43.2
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.7e-34 150.2 150 52.0
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 2.2e-34 149.8 168 49.4
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 4.9e-34 148.7 218 43.1
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 6.5e-34 148.3 200 45.5
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.4e-33 147.1 239 39.3
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 3.2e-33 146.0 161 49.1
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 2.7e-32 142.9 163 49.1
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 1.8e-31 140.2 90 74.4
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.8e-31 140.2 84 76.2
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 3.0e-31 139.4 125 56.8
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.9e-30 136.7 89 74.2
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.5e-30 136.3 188 43.1
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 7.4e-30 134.8 89 73.0
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 7.4e-30 134.8 161 46.6
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 9.6e-30 134.4 88 73.9
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.1e-28 131.0 89 73.0
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 1.1e-28 131.0 199 38.7
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 2.4e-28 129.8 141 46.8
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.1e-25 120.9 107 57.9
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 2.2e-10 70.1 52 65.4
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 3.8e-10 69.3 51 66.7
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 3.9e-07 59.3 36 75.0
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 3.9e-07 59.3 36 75.0
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.0e-06 57.0 36 72.2
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.0e-06 57.0 51 49.0


User provided reference genes

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