Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.8e-273 945.3 474 100.0
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.8e-273 945.3 474 100.0
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 2.3e-127 459.9 260 92.3
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 5.2e-127 458.8 260 91.9
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 9.5e-113 411.4 262 80.9
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 1.2e-54 218.4 231 52.4
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 2.6e-54 217.2 225 56.4
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 5.0e-53 213.0 254 57.1
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 6.5e-53 212.6 241 54.4
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 3.2e-52 210.3 275 50.2
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 3.2e-52 210.3 252 48.8
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 9.4e-52 208.8 226 54.0
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 4.7e-51 206.5 277 49.1
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 2.6e-49 200.7 228 52.6
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 4.4e-49 199.9 223 52.5
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 9.7e-49 198.7 224 51.3
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 1.3e-48 198.4 243 49.0
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 2.8e-48 197.2 230 51.3
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 1.1e-47 195.3 229 52.0
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 2.4e-47 194.1 229 50.2
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 9.1e-47 192.2 215 52.1
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 1.2e-46 191.8 233 54.1
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.2e-46 191.8 234 49.1
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 2.6e-46 190.7 235 51.5
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 5.9e-46 189.5 226 50.0
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 1.7e-45 188.0 227 48.0
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 1.9e-44 184.5 218 50.5
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 1.9e-44 184.5 224 48.7
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 5.5e-44 183.0 218 50.9
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 5.5e-44 183.0 218 50.5
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 3.6e-43 180.3 226 47.3
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 6.1e-43 179.5 242 45.9
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 5.2e-42 176.4 226 48.2
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 6.7e-42 176.0 238 47.1
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 7.5e-41 172.6 227 48.5
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 9.7e-41 172.2 231 46.8
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 9.7e-41 172.2 227 46.7
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 9.7e-41 172.2 227 48.5
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 1.3e-40 171.8 221 49.3
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 2.2e-40 171.0 222 47.3
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 2.8e-40 170.6 227 48.5
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 2.8e-40 170.6 223 44.8
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 4.8e-40 169.9 229 44.5
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 6.3e-40 169.5 252 46.4
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.1e-39 168.7 227 45.8
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 1.8e-39 167.9 244 43.0
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 2.4e-39 167.5 232 44.8
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 5.3e-39 166.4 229 49.3
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 2.0e-38 164.5 219 48.9
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 2.0e-38 164.5 240 44.2
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 2.7e-38 164.1 255 40.4
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 3.5e-38 163.7 267 41.9
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 4.5e-38 163.3 225 44.9
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 1.7e-37 161.4 248 42.3
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 2.2e-37 161.0 226 45.6
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 2.2e-37 161.0 228 47.8
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 2.9e-37 160.6 229 45.0
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 5.0e-37 159.8 228 44.7
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.1e-36 158.7 226 42.9
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 1.5e-36 158.3 216 44.4
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 3.2e-36 157.1 223 43.5
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 1.6e-35 154.8 203 47.8
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 2.1e-35 154.5 236 42.8
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 4.7e-35 153.3 230 40.4
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 8.0e-35 152.5 235 45.1
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 5.2e-34 149.8 201 48.3
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 1.5e-33 148.3 221 43.9
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 2.0e-33 147.9 217 45.2
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 1.1e-31 142.1 148 56.1
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 5.4e-31 139.8 155 47.1
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 4.5e-30 136.7 219 44.3
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 1.0e-29 135.6 260 38.8
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 2.5e-28 131.0 255 38.8
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 5.5e-28 129.8 225 40.9
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 7.2e-28 129.4 185 44.3
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 1.6e-27 128.3 232 39.2
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 6.1e-27 126.3 227 40.5
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 8.9e-26 122.5 162 44.4
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 8.9e-26 122.5 219 36.1
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 1.5e-25 121.7 222 37.4
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 5.7e-25 119.8 118 53.4
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 1.6e-19 101.7 152 40.8
FAN14G1529 Fragaria x ananassa HOM05D011873 ORTHO05D009733 2.1e-19 101.3 166 40.4
FAN20G0803 Fragaria x ananassa HOM05D011873 ORTHO05D009733 2.6e-17 94.4 52 82.7
FAN23G2388 Fragaria x ananassa HOM05D011873 ORTHO05D029413 7.5e-17 92.8 52 78.8
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 2.2e-16 91.3 112 42.9
FAN09G0618 Fragaria x ananassa HOM05D011873 ORTHO05D009733 5.4e-15 86.7 55 78.2
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 1.0e-13 82.4 80 60.0
FvH4_4g13941 Fragaria vesca HOM05D018240 ORTHO05D000002 1.7e-13 81.6 51 74.5
FvH4_3g16330 Fragaria vesca HOM05D018240 ORTHO05D025480 6.6e-13 79.7 52 73.1
FAN12G1170 Fragaria x ananassa HOM05D011873 ORTHO05D200137 1.1e-12 79.0 68 60.3
FAN13G0996 Fragaria x ananassa HOM05D007766 ORTHO05D009733 7.3e-12 76.3 35 97.1
Medtr8g023290 Medicago truncatula HOM05D007766 ORTHO05D009733 1.2e-11 75.5 108 48.1
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 1.6e-11 75.1 247 32.0
FAN13G2924 Fragaria x ananassa HOM05D007766 ORTHO05D009733 3.6e-11 73.9 35 97.1
FAN27G1480 Fragaria x ananassa HOM05D018240 ORTHO05D025480 8.0e-11 72.8 54 64.8
FAN18G2564 Fragaria x ananassa HOM05D018240 ORTHO05D025480 1.8e-10 71.6 47 72.3
FAN27G0399 Fragaria x ananassa HOM05D018240 ORTHO05D025480 1.8e-10 71.6 51 66.7
FAN06G1411 Fragaria x ananassa HOM05D018240 ORTHO05D025480 2.3e-10 71.2 46 73.9
FAN23G1194 Fragaria x ananassa HOM05D011873 ORTHO05D035388 8.9e-10 69.3 58 55.2
FAN06G0072 Fragaria x ananassa HOM05D011873 ORTHO05D009733 2.0e-09 68.2 42 71.4
FAN24G2549 Fragaria x ananassa HOM05D002601 ORTHO05D002884 7.5e-09 66.2 32 90.6
FAN10G2051 Fragaria x ananassa HOM05D000147 ORTHO05D007841 1.3e-08 65.5 39 79.5
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 4.9e-08 63.5 137 37.2
Aa31LG5G1830 Aethionema arabicum HOM05D000768 ORTHO05D014349 1.4e-07 62.0 96 41.7
Os07g0675200 Oryza sativa ssp. japonica HOM05D007766 ORTHO05D009733 3.2e-07 60.8 252 28.6
Sp6g02040 Schrenkiella parvula HOM05D012784 ORTHO05D014349 4.1e-07 60.5 96 45.8
THA.LOC104801295 Tarenaya hassleriana HOM05D012784 ORTHO05D014349 4.1e-07 60.5 104 41.3
Thhalv10029260m.g Eutrema salsugineum HOM05D012784 ORTHO05D014349 5.4e-07 60.1 97 45.4


User provided reference genes

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