Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.5e-150 536.2 283 100.0
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.3e-149 533.1 283 99.6
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.1e-143 513.5 283 93.3
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.2e-126 456.8 279 84.9
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 2.2e-101 372.9 286 72.0
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.9e-101 372.5 287 72.5
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.7e-99 365.9 250 78.0
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 8.0e-99 364.4 285 70.5
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 1.4e-98 363.6 287 71.1
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 8.8e-98 360.9 286 68.2
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 5.9e-94 348.2 248 75.0
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.3e-93 347.1 289 66.8
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.3e-93 347.1 297 67.7
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 5.5e-92 341.7 249 72.3
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.2e-91 340.5 241 72.6
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.2e-91 340.5 250 75.2
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.2e-91 340.5 270 68.5
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 4.7e-91 338.6 259 69.5
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.8e-90 336.7 245 72.7
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.8e-90 336.7 289 64.7
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 2.3e-90 336.3 243 74.5
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 3.0e-90 335.9 250 70.4
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 6.8e-90 334.7 249 71.1
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 6.8e-90 334.7 249 71.1
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 6.8e-90 334.7 248 71.0
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 8.9e-90 334.3 247 73.3
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.5e-89 333.6 241 73.9
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 4.4e-89 332.0 269 68.4
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 7.5e-89 331.3 243 73.3
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 7.5e-89 331.3 259 68.3
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 9.8e-89 330.9 230 73.5
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.3e-88 330.5 244 70.1
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.7e-88 330.1 241 71.0
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.7e-88 328.9 274 66.8
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.9e-88 328.6 259 66.4
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.4e-87 327.0 251 68.1
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.8e-87 326.6 254 69.7
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.4e-87 326.2 273 64.8
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.1e-87 325.9 284 63.4
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.1e-87 325.5 247 68.8
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.4e-87 325.1 245 69.8
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.4e-87 325.1 218 75.2
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.2e-86 323.9 254 69.3
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.2e-86 323.9 242 71.5
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.6e-86 323.6 248 70.6
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.6e-86 323.6 285 63.5
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 3.5e-86 322.4 241 71.4
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 4.5e-86 322.0 302 60.9
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 4.5e-86 322.0 282 64.5
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 4.5e-86 322.0 294 60.9
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 4.5e-86 322.0 243 69.5
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.8e-86 321.2 270 65.9
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 7.8e-86 321.2 294 60.9
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 7.8e-86 321.2 296 61.1
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 7.8e-86 321.2 284 63.0
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 7.8e-86 321.2 284 63.0
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.3e-85 320.5 259 67.6
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.7e-85 320.1 227 72.2
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.3e-85 319.7 294 60.2
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 3.8e-85 318.9 288 62.2
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.0e-85 318.5 272 65.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 5.0e-85 318.5 245 67.8
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 5.0e-85 318.5 237 69.6
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 6.6e-85 318.2 241 68.5
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 6.6e-85 318.2 254 66.5
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 8.6e-85 317.8 244 69.3
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.1e-84 317.4 254 70.5
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-84 317.4 272 64.7
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.5e-84 317.0 243 69.1
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.9e-84 316.6 246 69.1
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 3.3e-84 315.8 285 61.8
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 4.3e-84 315.5 246 69.1
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 4.3e-84 315.5 264 64.4
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 4.3e-84 315.5 244 66.8
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 7.3e-84 314.7 270 63.7
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 9.5e-84 314.3 251 69.3
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 1.2e-83 313.9 251 70.5
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.2e-83 313.9 216 72.7
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.6e-83 313.5 213 74.2
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.6e-83 313.5 205 79.0
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.1e-83 313.2 237 69.6
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.8e-83 312.8 244 70.9
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 4.7e-83 312.0 247 67.6
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.0e-82 310.8 243 66.3
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.4e-82 310.5 205 77.1
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.8e-82 310.1 263 65.8
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 3.0e-82 309.3 284 60.2
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 8.9e-82 307.8 244 66.0
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.0e-81 306.6 240 67.9
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.6e-81 306.2 203 75.4
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 5.8e-81 305.1 205 75.6
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 5.8e-81 305.1 205 75.1
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 5.8e-81 305.1 205 77.1
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 7.5e-81 304.7 235 68.1
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.7e-80 303.5 283 59.0
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 3.7e-80 302.4 205 74.6
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 6.4e-80 301.6 202 75.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.8e-79 300.1 203 76.4
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 3.2e-79 299.3 202 75.2
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 3.2e-79 299.3 202 75.2
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 3.2e-79 299.3 232 69.8
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 3.2e-79 299.3 205 74.1
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.7e-78 296.2 229 68.6
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.7e-78 296.2 194 76.3
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.7e-78 296.2 248 63.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 3.9e-77 292.4 201 73.1
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 5.6e-76 288.5 182 79.1
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.6e-75 285.8 199 71.9
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.0e-74 282.3 200 71.5
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 5.2e-74 282.0 199 70.9
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 7.5e-73 278.1 279 55.6
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 1.7e-72 276.9 205 67.3
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 3.7e-72 275.8 214 66.4
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.9e-72 275.4 200 69.0
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 4.9e-72 275.4 199 70.9
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 3.2e-71 272.7 184 75.5
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 4.6e-70 268.9 206 69.4
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 3.6e-67 259.2 180 71.1
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.4e-66 257.3 182 70.9
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 3.1e-66 256.1 253 55.7
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 2.0e-65 253.4 180 71.7
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 3.4e-65 252.7 243 55.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.3e-64 250.8 249 57.8
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 2.3e-61 240.0 187 67.4
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 6.6e-61 238.4 242 53.3
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.5e-60 237.3 167 71.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 9.5e-60 234.6 244 56.1
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 8.9e-58 228.0 168 68.5
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 8.9e-58 228.0 168 68.5
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 5.8e-57 225.3 263 54.4
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 9.9e-57 224.6 186 65.1
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.7e-53 213.8 216 56.5
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 2.1e-51 206.8 193 60.1
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 6.2e-51 205.3 135 79.3
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 6.4e-48 195.3 111 82.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.2e-46 191.0 228 47.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.5e-44 184.1 199 47.7
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 9.6e-44 181.4 115 76.5
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.3e-40 171.0 88 96.6
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 9.3e-39 164.9 97 83.5
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.2e-32 143.7 222 41.0
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.0e-29 133.3 202 44.1
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 2.6e-25 120.2 211 35.1
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 3.4e-25 119.8 199 38.2
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 7.6e-25 118.6 70 78.6
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 6.5e-24 115.5 190 37.9
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.6e-22 110.9 205 34.1
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 7.9e-22 108.6 123 52.8
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.9e-20 104.0 148 47.3
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 4.1e-18 96.3 111 53.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 8.5e-16 88.6 202 33.2
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.4e-15 87.8 119 47.1
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.1e-12 78.2 69 63.8
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 3.1e-10 70.1 71 60.6
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 6.9e-10 68.9 38 86.8
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.5e-09 67.8 67 58.2
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 1.0e-08 65.1 157 33.1


User provided reference genes

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