Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0342 Fragaria x ananassa HOM05D002477 ORTHO05D001927 7.3e-300 1033.1 514 100.0
FAN18G4344 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.8e-298 1028.5 514 99.6
FvH4_5g11840 Fragaria vesca HOM05D002477 ORTHO05D001927 9.8e-297 1022.7 514 99.2
FAN08G2173 Fragaria x ananassa HOM05D002477 ORTHO05D001927 3.2e-271 937.9 514 92.4
FAN13G2553 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.9e-256 887.5 512 88.9
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 1.3e-176 623.6 538 63.8
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 2.4e-93 347.1 549 41.7
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 1.8e-80 304.3 589 37.0
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 1.5e-66 258.1 796 29.6
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.1e-61 241.9 581 33.7
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.9e-58 231.1 582 33.0
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 1.2e-57 228.4 776 28.9
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 8.1e-57 225.7 771 27.4
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 5.8e-55 219.5 773 28.1
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.9e-54 217.2 755 27.8
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 7.1e-53 212.6 561 33.2
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.6e-52 211.5 567 33.3
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 6.0e-52 209.5 414 37.9
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.5e-50 204.9 804 26.9
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.9e-50 204.5 803 26.8
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 2.8e-49 200.7 565 30.1
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 6.8e-48 196.1 677 29.2
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.3e-46 191.8 565 29.6
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 4.9e-46 189.9 551 31.2
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 4.9e-46 189.9 577 29.6
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 8.4e-46 189.1 558 31.7
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 8.4e-46 189.1 532 32.0
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 1.2e-44 185.3 640 30.0
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 1.2e-44 185.3 565 30.6
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 6.0e-44 183.0 550 31.1
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 1.3e-43 181.8 560 28.9
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 9.6e-42 175.6 550 29.1
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 1.1e-40 172.2 586 29.0
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 3.1e-40 170.6 596 28.0
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 5.2e-40 169.9 566 29.7
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 5.8e-39 166.4 543 30.4
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 1.9e-37 161.4 540 30.2
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 1.9e-37 161.4 559 29.7
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 5.4e-37 159.8 545 30.5
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 4.6e-36 156.8 544 30.9
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 3.9e-35 153.7 546 28.8
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 3.9e-35 153.7 561 28.0
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 3.9e-35 153.7 545 28.3
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 5.1e-35 153.3 539 29.3
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.9e-34 151.4 554 28.3
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 3.3e-34 150.6 508 28.3
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 5.6e-34 149.8 534 27.2
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 6.9e-32 142.9 528 27.7
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.2e-31 142.1 581 27.9
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 1.5e-31 141.7 592 26.9
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 1.3e-30 138.7 525 28.0
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 6.4e-30 136.3 590 27.6
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 8.4e-30 136.0 525 27.6
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.4e-29 135.2 549 27.0
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 1.9e-29 134.8 558 27.4
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 9.3e-29 132.5 520 26.7
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.5e-28 130.6 548 26.8
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 3.5e-28 130.6 642 25.7
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 1.0e-27 129.0 445 29.2
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.3e-27 128.6 529 27.6
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 2.3e-27 127.9 509 26.3
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 3.0e-27 127.5 554 27.8
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 3.9e-27 127.1 639 26.1
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 5.1e-27 126.7 532 26.5
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 8.7e-27 125.9 531 27.5
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 3.3e-26 124.0 640 24.1
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 3.3e-26 124.0 536 26.5
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 3.3e-26 124.0 547 26.7
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 7.4e-26 122.9 417 29.7
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 9.6e-26 122.5 543 26.7
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 9.6e-26 122.5 529 26.5
Hund24730 Selenicereus undatus HOM05D002477 ORTHO05D001927 1.3e-25 122.1 507 26.4
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.6e-25 121.7 513 26.5
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 3.6e-25 120.6 562 25.3
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 4.8e-25 120.2 385 30.4
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 1.1e-24 119.0 523 26.6
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 1.1e-24 119.0 511 27.6
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.4e-24 118.6 583 25.4
Sc19g0006700 Simmondsia chinensis HOM05D002477 ORTHO05D001927 1.4e-24 118.6 523 25.6
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.4e-24 117.9 537 27.2
Sc25g0005240 Simmondsia chinensis HOM05D002477 ORTHO05D001927 2.4e-24 117.9 521 25.1
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 4.0e-24 117.1 515 25.4
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 5.3e-24 116.7 535 26.5
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 6.9e-24 116.3 558 28.3
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 9.0e-24 115.9 440 29.5
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 2.0e-23 114.8 515 25.2
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 2.0e-23 114.8 661 24.2
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 2.6e-23 114.4 541 26.1
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 3.4e-23 114.0 647 24.9
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 4.5e-23 113.6 562 25.4
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 3.2e-21 107.5 526 27.2
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 1.6e-20 105.1 514 24.5
Ah.04g151880 Amaranthus hybridus HOM05D002477 ORTHO05D001927 2.7e-20 104.4 515 25.0
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 7.9e-20 102.8 523 24.5
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 1.9e-18 98.2 297 31.6
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 5.6e-18 96.7 468 25.2
Dinv24130 Davidia involucrata HOM05D002477 ORTHO05D001927 1.6e-17 95.1 278 29.9
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 3.7e-17 94.0 623 23.3
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 1.4e-16 92.0 633 24.0
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 1.8e-16 91.7 153 41.2
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 1.8e-16 91.7 265 27.2
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 3.1e-16 90.9 507 22.9
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea HOM05D002477 ORTHO05D001927 5.3e-16 90.1 514 23.7
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea HOM05D002477 ORTHO05D001927 5.3e-16 90.1 514 23.7
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 5.3e-16 90.1 103 41.7
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 4.9e-14 83.6 496 26.0
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 6.5e-14 83.2 513 23.0
Lj5g0016725 Lotus japonicus HOM05D002477 ORTHO05D001927 2.5e-13 81.3 97 39.2
MD12G1067700 Malus domestica HOM05D002477 ORTHO05D001927 2.5e-13 81.3 96 43.8
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 4.2e-13 80.5 478 23.2
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 7.1e-13 79.7 502 22.3
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 2.1e-12 78.2 233 29.6
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 4.6e-12 77.0 236 30.5
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 1.3e-11 75.5 111 38.7
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.8e-11 75.1 156 32.1
MD12G1067800 Malus domestica HOM05D002477 ORTHO05D001927 5.1e-11 73.6 98 44.9
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 6.7e-11 73.2 107 34.6
AUR62037152 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.1e-10 72.4 75 45.3
Rhsim04G0031500 Rhododendron simsii HOM05D002477 ORTHO05D001927 1.5e-10 72.0 75 41.3
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.5e-10 71.2 75 42.7
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.5e-10 71.2 75 42.7
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.5e-10 71.2 75 44.0
ATR0757G170 Amborella trichopoda HOM05D002477 ORTHO05D001927 4.3e-10 70.5 150 32.7
Hund08100 Selenicereus undatus HOM05D002477 ORTHO05D001927 4.3e-10 70.5 75 40.0
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 5.7e-10 70.1 122 32.8
MSTRG.6732 Avicennia marina HOM05D002477 ORTHO05D001927 9.6e-10 69.3 75 44.0
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 9.6e-10 69.3 303 24.1
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 9.6e-10 69.3 99 36.4
MD15G1066500 Malus domestica HOM05D000240 ORTHO05D002721 1.6e-09 68.6 156 33.3
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 1.6e-09 68.6 78 39.7
SGA_v2.0_scaffold70G23601 Striga asiatica HOM05D002477 ORTHO05D001927 2.8e-09 67.8 75 41.3
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 2.8e-09 67.8 100 35.0
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 3.7e-09 67.4 78 41.0
unitig_744.g24381 Utricularia gibba HOM05D002477 ORTHO05D001927 3.7e-09 67.4 152 32.2
vmacro09464 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 4.8e-09 67.0 75 38.7
MSTRG.15028 Avicennia marina HOM05D002477 ORTHO05D001927 6.3e-09 66.6 75 41.3
EL10Ac9g22351 Beta vulgaris HOM05D002477 ORTHO05D001927 1.4e-08 65.5 75 38.7
Ca_16324_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 1.4e-08 65.5 82 37.8
Eucgr.K01371 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.4e-08 65.5 70 42.9
CDE12G0621 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 1.8e-08 65.1 145 30.3
AUR62025099 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.8e-08 65.1 64 48.4
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 1.8e-08 65.1 75 37.3
Oeu052600.1 Olea europaea HOM05D002477 ORTHO05D001927 1.8e-08 65.1 75 40.0
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.8e-08 65.1 155 30.3
Peaxi162Scf00111g00528 Petunia axillaris HOM05D002477 ORTHO05D001927 2.4e-08 64.7 75 37.3
Sed0002535 Sechium edule HOM05D002477 ORTHO05D001927 3.1e-08 64.3 71 38.0
TWI38G0076 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 5.3e-08 63.5 114 28.9
Manes.18G010900 Manihot esculenta HOM05D002477 ORTHO05D001927 6.9e-08 63.2 75 40.0
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 9.0e-08 62.8 156 33.3
Haze_12569 Corylus avellana HOM05D002477 ORTHO05D001927 1.2e-07 62.4 83 34.9
Lj6g0015125 Lotus japonicus HOM05D002477 ORTHO05D001927 1.2e-07 62.4 75 37.3
Prupe.3G192500 Prunus persica HOM05D002477 ORTHO05D001927 1.2e-07 62.4 77 35.1
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 1.5e-07 62.0 84 36.9
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 1.5e-07 62.0 69 39.1
MD09G1134000 Malus domestica HOM05D002477 ORTHO05D001927 2.0e-07 61.6 78 34.6
SGA_v2.0_scaffold135G34972 Striga asiatica HOM05D002477 ORTHO05D001927 2.6e-07 61.2 329 23.4
ECA233G6189 Erigeron canadensis HOM05D002477 ORTHO05D001927 3.4e-07 60.8 103 32.0
MELO3C024174.2 Cucumis melo HOM05D002477 ORTHO05D001927 5.9e-07 60.1 71 35.2
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 5.9e-07 60.1 125 33.6
ClCG02G003110 Citrullus lanatus HOM05D002477 ORTHO05D001927 7.6e-07 59.7 71 35.2
CsaV3_7G002300 Cucumis sativus L. HOM05D002477 ORTHO05D001927 7.6e-07 59.7 71 35.2
TPR.G23127 Trifolium pratense HOM05D002477 ORTHO05D001927 1.0e-06 59.3 78 35.9
Sc21g0000360 Simmondsia chinensis HOM05D002477 ORTHO05D001927 1.3e-06 58.9 85 31.8
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 1.7e-06 58.5 144 28.5
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 2.2e-06 58.2 144 28.5
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 2.2e-06 58.2 144 31.2
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 2.9e-06 57.8 125 32.0
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.8e-06 57.4 95 33.7
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 5.0e-06 57.0 123 35.0
CDE02G2179 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 5.0e-06 57.0 133 33.1
Nitab4.5_0007468g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.0e-06 57.0 75 32.0
RcHm_v2.0_Chr2g0155231 Rosa chinensis HOM05D002477 ORTHO05D001927 5.0e-06 57.0 80 35.0
Zm00001eb210290 Zea mays HOM05D012665 ORTHO05D015176 5.0e-06 57.0 72 40.3
CAN.G585.14 Capsicum annuum HOM05D002477 ORTHO05D001927 8.5e-06 56.2 70 38.6
Solyc07g056120.3 Solanum lycopersicum HOM05D002477 ORTHO05D001927 8.5e-06 56.2 49 44.9


User provided reference genes

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