Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.0e-43 177.6 103 100.0
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 3.3e-42 174.9 103 98.1
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 2.8e-17 92.0 124 46.0
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 6.9e-16 87.4 109 54.1
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.2e-15 86.7 106 54.7
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 1.5e-15 86.3 105 47.6
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 3.4e-15 85.1 123 44.7
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 6.4e-14 80.9 121 45.5
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.9e-13 79.3 99 47.5
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 1.9e-13 79.3 104 49.0
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 2.4e-13 79.0 112 44.6
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 2.4e-13 79.0 112 41.1
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 3.2e-13 78.6 99 47.5
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 9.3e-13 77.0 106 52.8
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.3e-13 77.0 99 44.4
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 9.3e-13 77.0 116 44.0
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 9.3e-13 77.0 115 45.2
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.2e-12 76.6 106 46.2
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.6e-12 76.3 120 45.8
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 4.6e-12 74.7 110 43.6
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 7.8e-12 73.9 112 45.5
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 7.8e-12 73.9 109 39.4
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 7.8e-12 73.9 115 42.6
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.0e-11 73.6 118 43.2
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.3e-11 73.2 101 47.5
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 1.3e-11 73.2 114 43.9
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 2.3e-11 72.4 122 41.0
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 2.3e-11 72.4 114 43.0
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.0e-11 72.0 102 43.1
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.0e-11 72.0 102 43.1
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 3.0e-11 72.0 111 46.8
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 3.9e-11 71.6 102 42.2
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.6e-11 70.9 124 40.3
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 6.6e-11 70.9 118 39.8
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 6.6e-11 70.9 96 41.7
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.5e-10 69.7 106 48.1
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 1.5e-10 69.7 114 43.9
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.5e-10 69.7 124 39.5
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.5e-10 69.7 106 45.3
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.9e-10 69.3 130 40.8
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.9e-10 69.3 126 38.1
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.9e-10 69.3 96 40.6
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.3e-10 68.2 124 37.9
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 4.3e-10 68.2 115 38.3
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 5.6e-10 67.8 112 42.0
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.6e-10 67.8 98 46.9
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 5.6e-10 67.8 121 42.1
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 7.3e-10 67.4 111 43.2
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 7.3e-10 67.4 105 45.7
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 9.6e-10 67.0 111 42.3
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 9.6e-10 67.0 122 41.0
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 9.6e-10 67.0 109 38.5
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.3e-09 66.6 126 38.9
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 1.3e-09 66.6 115 39.1
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.6e-09 66.2 116 37.1
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.6e-09 66.2 110 46.4
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 1.6e-09 66.2 114 36.8
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 2.1e-09 65.9 110 40.9
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 2.1e-09 65.9 110 40.9
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 2.1e-09 65.9 114 45.6
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 2.8e-09 65.5 109 40.4
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 2.8e-09 65.5 111 36.9
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.6e-09 65.1 113 36.3
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.6e-09 65.1 103 36.9
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 4.8e-09 64.7 106 42.5
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.8e-09 64.7 115 37.4
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 6.2e-09 64.3 119 37.8
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 6.2e-09 64.3 120 40.0
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 8.1e-09 63.9 117 37.6
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 8.1e-09 63.9 102 45.1
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 8.1e-09 63.9 105 40.0
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 8.1e-09 63.9 95 51.6
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.1e-08 63.5 118 39.8
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-08 63.2 99 46.5
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.8e-08 62.8 118 37.3
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 1.8e-08 62.8 73 47.9
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 1.8e-08 62.8 113 40.7
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.8e-08 62.8 112 46.4
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 2.4e-08 62.4 108 37.0
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.4e-08 62.4 113 45.1
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 2.4e-08 62.4 114 36.8
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 2.4e-08 62.4 109 36.7
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 2.4e-08 62.4 109 37.6
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 3.1e-08 62.0 109 42.2
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 3.1e-08 62.0 103 39.8
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 3.1e-08 62.0 107 51.4
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 4.0e-08 61.6 63 58.7
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 4.0e-08 61.6 104 40.4
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 4.0e-08 61.6 115 35.7
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 4.0e-08 61.6 108 50.0
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 5.3e-08 61.2 108 38.0
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.3e-08 61.2 62 53.2
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 5.3e-08 61.2 113 35.4
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 5.3e-08 61.2 66 60.6
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 6.9e-08 60.8 112 37.5
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 6.9e-08 60.8 124 36.3
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 6.9e-08 60.8 114 41.2
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 9.0e-08 60.5 101 38.6
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 9.0e-08 60.5 103 45.6
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.2e-07 60.1 64 57.8
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.5e-07 59.7 115 39.1
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.5e-07 59.7 119 45.4
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 1.5e-07 59.7 117 37.6
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.0e-07 59.3 106 36.8
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 2.0e-07 59.3 124 40.3
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 2.6e-07 58.9 115 34.8
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 2.6e-07 58.9 63 52.4
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 3.4e-07 58.5 123 35.0
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 3.4e-07 58.5 108 38.0
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 5.8e-07 57.8 119 37.8
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 5.8e-07 57.8 119 37.8
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 5.8e-07 57.8 118 43.2
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 5.8e-07 57.8 122 40.2
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.8e-07 57.8 122 40.2
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 5.8e-07 57.8 112 46.4
BcaB04g17372 Brassica carinata HOM05D012335 ORTHO05D014421 7.6e-07 57.4 102 37.3
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 7.6e-07 57.4 122 40.2
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 7.6e-07 57.4 120 43.3
C08p04500 Brassica napus HOM05D012335 ORTHO05D014421 9.9e-07 57.0 102 37.3
BolC8t47255H Brassica oleracea HOM05D012335 ORTHO05D014421 9.9e-07 57.0 102 37.3
AL1G55880 Arabidopsis lyrata HOM05D012335 ORTHO05D014421 1.3e-06 56.6 102 37.3
BraA08t32447Z Brassica rapa HOM05D012335 ORTHO05D014421 1.3e-06 56.6 102 36.3
A08p04230 Brassica napus HOM05D012335 ORTHO05D014421 1.7e-06 56.2 102 36.3
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 2.2e-06 55.8 71 42.3
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 2.2e-06 55.8 106 36.8
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 2.2e-06 55.8 78 43.6
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.8e-06 55.1 103 38.8
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 3.8e-06 55.1 116 37.1
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 3.8e-06 55.1 67 56.7
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 4.9e-06 54.7 120 39.2
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 6.4e-06 54.3 75 45.3


User provided reference genes

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