Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0287 Fragaria x ananassa HOM05D035633 ORTHO05D017928 4.8e-59 231.1 130 100.0
FvH4_5g23131 Fragaria vesca HOM05D035633 ORTHO05D017928 2.7e-57 225.3 112 99.1
FAN18G0114 Fragaria x ananassa HOM05D035633 ORTHO05D017928 2.7e-57 225.3 112 99.1
FAN04G2148 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.5e-39 166.4 128 71.9
FvH4_6g06680 Fragaria vesca HOM05D000007 ORTHO05D000039 2.9e-27 125.6 169 47.3
FvH4_6g06780 Fragaria vesca HOM05D000007 ORTHO05D017928 5.1e-24 114.8 169 43.8
FAN09G1694 Fragaria x ananassa HOM05D000007 ORTHO05D017928 6.6e-24 114.4 169 44.4
RcHm_v2.0_Chr3g0456241 Rosa chinensis HOM05D000007 ORTHO05D000039 1.7e-16 89.7 167 36.5
MD17G1255300 Malus domestica HOM05D000007 ORTHO05D000039 2.4e-13 79.3 147 39.5
MD17G1252700 Malus domestica HOM05D000007 ORTHO05D000039 3.1e-13 79.0 147 38.8
MD17G1255900 Malus domestica HOM05D000007 ORTHO05D000039 1.2e-12 77.0 146 39.7
MD17G1252300 Malus domestica HOM05D000007 ORTHO05D000039 3.4e-12 75.5 147 36.1
FAN14G1360 Fragaria x ananassa HOM05D000007 ORTHO05D017928 4.4e-12 75.1 156 31.4
MD17G1253700 Malus domestica HOM05D000007 ORTHO05D000039 7.6e-12 74.3 147 36.7
MD17G1255800 Malus domestica HOM05D000007 ORTHO05D000039 7.6e-12 74.3 150 36.7
MD12G1213000 Malus domestica HOM05D000007 ORTHO05D000039 9.9e-12 73.9 152 34.2
Prupe.6G319000 Prunus persica HOM05D000007 ORTHO05D000039 9.9e-12 73.9 114 40.4
RcHm_v2.0_Chr3g0456251 Rosa chinensis HOM05D000007 ORTHO05D000039 9.9e-12 73.9 90 48.9
MD17G1251200 Malus domestica HOM05D000007 ORTHO05D000039 1.3e-11 73.6 147 37.4
MD17G1254200 Malus domestica HOM05D000007 ORTHO05D000039 1.7e-11 73.2 151 35.8
MD17G1251300 Malus domestica HOM05D000007 ORTHO05D000039 2.2e-11 72.8 150 37.3
RcHm_v2.0_Chr6g0259371 Rosa chinensis HOM05D000007 ORTHO05D000039 2.2e-11 72.8 164 34.1
FAN15G2226 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.8e-11 72.0 69 55.1
Prupe.6G318300 Prunus persica HOM05D000007 ORTHO05D000039 4.9e-11 71.6 163 32.5
FAN09G1312 Fragaria x ananassa HOM05D000007 ORTHO05D017928 6.4e-11 71.2 67 49.3
Prupe.6G320600 Prunus persica HOM05D000007 ORTHO05D000039 6.4e-11 71.2 152 30.9
MD17G1253800 Malus domestica HOM05D000007 ORTHO05D000039 8.4e-11 70.9 146 36.3
FvH4_2g25660 Fragaria vesca HOM05D000007 ORTHO05D000039 1.1e-10 70.5 161 32.9
FAN24G0319 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.1e-10 70.5 161 32.9
FAN02G1412 Fragaria x ananassa HOM05D000007 ORTHO05D017928 1.4e-10 70.1 61 54.1
FvH4_6g06790 Fragaria vesca HOM05D000007 ORTHO05D000039 2.4e-10 69.3 160 28.1
MD17G1253000 Malus domestica HOM05D000007 ORTHO05D000039 4.2e-10 68.6 146 36.3
FAN13G2908 Fragaria x ananassa HOM05D000007 ORTHO05D000039 7.1e-10 67.8 116 32.8
MD17G1251100 Malus domestica HOM05D000007 ORTHO05D000039 7.1e-10 67.8 146 37.7
MD17G1251900 Malus domestica HOM05D000007 ORTHO05D000039 7.1e-10 67.8 147 34.7
RcHm_v2.0_Chr6g0293911 Rosa chinensis HOM05D000007 ORTHO05D000039 7.1e-10 67.8 172 32.0
RcHm_v2.0_Chr6g0262491 Rosa chinensis HOM05D000007 ORTHO05D000039 9.3e-10 67.4 74 47.3
FvH4_6g06730 Fragaria vesca HOM05D000007 ORTHO05D000039 1.2e-09 67.0 151 27.8
FvH4_6g06820 Fragaria vesca HOM05D000007 ORTHO05D000039 1.2e-09 67.0 63 47.6
MD17G1256300 Malus domestica HOM05D000007 ORTHO05D000039 1.2e-09 67.0 142 35.2
RcHm_v2.0_Chr3g0456291 Rosa chinensis HOM05D000007 ORTHO05D000039 1.6e-09 66.6 61 50.8
MD00G1054600 Malus domestica HOM05D000007 ORTHO05D000039 2.1e-09 66.2 147 33.3
MD17G1252200 Malus domestica HOM05D000007 ORTHO05D000039 4.6e-09 65.1 155 31.6
MD17G1256100 Malus domestica HOM05D000007 ORTHO05D000039 4.6e-09 65.1 150 32.7
RcHm_v2.0_Chr3g0461521 Rosa chinensis HOM05D003032 ORTHO05D003456 6.0e-09 64.7 78 44.9
FAN27G2778 Fragaria x ananassa HOM05D004096 ORTHO05D000039 1.0e-08 63.9 109 40.4
MD00G1149800 Malus domestica HOM05D000007 ORTHO05D000039 1.0e-08 63.9 143 37.1
RcHm_v2.0_Chr7g0233181 Rosa chinensis HOM05D003032 ORTHO05D000039 1.0e-08 63.9 53 58.5
MELO3C030704.2 Cucumis melo HOM05D000007 ORTHO05D000039 1.3e-08 63.5 138 32.6
RcHm_v2.0_Chr2g0111681 Rosa chinensis HOM05D000007 ORTHO05D000039 1.3e-08 63.5 146 32.2
RcHm_v2.0_Chr6g0293881 Rosa chinensis HOM05D000007 ORTHO05D000039 1.3e-08 63.5 66 48.5
RcHm_v2.0_Chr3g0456311 Rosa chinensis HOM05D000007 ORTHO05D000039 1.7e-08 63.2 76 40.8
Duzib147G0121 Durio zibethinus HOM05D000007 ORTHO05D000039 3.0e-08 62.4 126 31.7
MD04G1199200 Malus domestica HOM05D000007 ORTHO05D000039 3.0e-08 62.4 153 27.5
MD17G1254700 Malus domestica HOM05D000007 ORTHO05D000039 3.9e-08 62.0 155 34.8
ClCG10G015170 Citrullus lanatus HOM05D000007 ORTHO05D000039 5.1e-08 61.6 134 32.8
FAN09G0220 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.6e-08 61.2 55 50.9
Prupe.6G319800 Prunus persica HOM05D000007 ORTHO05D000039 6.6e-08 61.2 159 29.6
FvH4_5g33841 Fragaria vesca HOM05D003032 ORTHO05D003456 8.7e-08 60.8 66 48.5
FAN08G1675 Fragaria x ananassa HOM05D003032 ORTHO05D000039 8.7e-08 60.8 66 48.5
FAN02G2443 Fragaria x ananassa HOM05D003032 ORTHO05D000039 1.1e-07 60.5 78 43.6
Prupe.6G316700 Prunus persica HOM05D000007 ORTHO05D000039 1.1e-07 60.5 164 28.7
MD15G1153400 Malus domestica HOM05D000007 ORTHO05D000039 1.5e-07 60.1 149 36.2
RcHm_v2.0_Chr3g0457391 Rosa chinensis HOM05D000007 ORTHO05D000039 1.5e-07 60.1 64 50.0
FAN02G3072 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.9e-07 59.7 55 52.7
RcHm_v2.0_Chr3g0455991 Rosa chinensis HOM05D000007 ORTHO05D000039 3.3e-07 58.9 70 47.1
Duzib114G0761 Durio zibethinus HOM05D000007 ORTHO05D000039 4.3e-07 58.5 140 30.7
FvH4_5g09390 Fragaria vesca HOM05D003032 ORTHO05D003456 4.3e-07 58.5 55 52.7
FvH4_6g06610 Fragaria vesca HOM05D000007 ORTHO05D000039 4.3e-07 58.5 151 29.1
FAN08G0362 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.3e-07 58.5 154 27.9
FAN18G1730 Fragaria x ananassa HOM05D003032 ORTHO05D003456 4.3e-07 58.5 55 52.7
FvH4_6g06760 Fragaria vesca HOM05D000007 ORTHO05D000039 5.6e-07 58.2 149 30.2
Gorai.008G098100 Gossypium raimondii HOM05D000007 ORTHO05D000039 5.6e-07 58.2 124 31.5
Thecc.10G092800 Theobroma cacao HOM05D000007 ORTHO05D000039 5.6e-07 58.2 133 33.1
FvH4_6g06802 Fragaria vesca HOM05D000007 ORTHO05D000039 7.3e-07 57.8 158 28.5
CsaV3_3G041390 Cucumis sativus L. HOM05D000007 ORTHO05D000039 9.6e-07 57.4 141 31.9
MD09G1130700 Malus domestica HOM05D000007 ORTHO05D000039 9.6e-07 57.4 149 36.9
Ciclev10011921m.g Citrus clementina HOM05D000007 ORTHO05D000039 1.3e-06 57.0 139 33.8
COL.COLO4_12256 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.3e-06 57.0 124 30.6
MELO3C009862.2 Cucumis melo HOM05D000007 ORTHO05D000039 1.3e-06 57.0 132 32.6
RcHm_v2.0_Chr3g0458451 Rosa chinensis HOM05D003032 ORTHO05D003456 1.3e-06 57.0 68 42.6
FvH4_6g07710 Fragaria vesca HOM05D000007 ORTHO05D000039 1.6e-06 56.6 55 52.7
FAN14G2157 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.6e-06 56.6 150 28.7
Prupe.6G319300 Prunus persica HOM05D000007 ORTHO05D000039 1.6e-06 56.6 146 28.1
Sed0015533 Sechium edule HOM05D000007 ORTHO05D000039 1.6e-06 56.6 133 33.8
FvH4_6g06840 Fragaria vesca HOM05D000007 ORTHO05D000039 2.1e-06 56.2 60 48.3
FAN14G1928 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.8e-06 55.8 63 47.6
MD09G1130400 Malus domestica HOM05D000007 ORTHO05D000039 2.8e-06 55.8 148 37.2
RcHm_v2.0_Chr3g0457451 Rosa chinensis HOM05D000007 ORTHO05D000039 2.8e-06 55.8 55 49.1
Sed0011783 Sechium edule HOM05D000007 ORTHO05D000039 2.8e-06 55.8 132 31.1
PGSC0003DMG400003797 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.8e-06 55.8 134 33.6
MELO3C009863.2 Cucumis melo HOM05D000007 ORTHO05D000039 3.6e-06 55.5 137 30.7
Dinv34982 Davidia involucrata HOM05D000007 ORTHO05D000039 3.6e-06 55.5 132 33.3
RcHm_v2.0_Chr3g0458461 Rosa chinensis HOM05D003032 ORTHO05D003456 3.6e-06 55.5 149 29.5
ClCG10G018890 Citrullus lanatus HOM05D000007 ORTHO05D000039 4.8e-06 55.1 124 36.3
Lj7C597G11 Lonicera japonica HOM05D000007 ORTHO05D000039 4.8e-06 55.1 134 33.6
Nitab4.5_0000191g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 4.8e-06 55.1 128 30.5
RcHm_v2.0_Chr3g0455781 Rosa chinensis HOM05D000007 ORTHO05D000039 4.8e-06 55.1 151 27.2
Solyc10g075010.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 4.8e-06 55.1 98 31.6
Dinv30114 Davidia involucrata HOM05D000007 ORTHO05D000039 6.2e-06 54.7 117 32.5
FvH4_5g01061 Fragaria vesca HOM05D000007 ORTHO05D000039 6.2e-06 54.7 138 26.1
FvH4_6g06750 Fragaria vesca HOM05D000007 ORTHO05D000039 6.2e-06 54.7 157 29.3
FAN02G1183 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.2e-06 54.7 151 27.8
MD17G1256000 Malus domestica HOM05D000007 ORTHO05D000039 6.2e-06 54.7 52 50.0
Nitab4.5_0000898g0040 Nicotiana tabacum HOM05D000007 ORTHO05D000017 6.2e-06 54.7 85 41.2
FvH4_6g16041 Fragaria vesca HOM05D000007 ORTHO05D000039 8.1e-06 54.3 55 47.3
FAN14G5293 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.1e-06 54.3 55 47.3
RcHm_v2.0_Chr2g0123521 Rosa chinensis HOM05D003032 ORTHO05D003456 8.1e-06 54.3 66 42.4


User provided reference genes

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