Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 6.0e-100 367.5 180 100.0
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.7e-99 365.9 180 99.4
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.7e-99 365.9 180 99.4
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 4.8e-97 357.8 180 97.2
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 5.6e-90 334.3 180 87.8
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 7.4e-90 334.0 179 90.5
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 2.1e-89 332.4 179 88.3
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.8e-89 332.0 180 86.7
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 87.2
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 4.8e-89 331.3 180 87.2
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 87.8
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 86.7
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 86.1
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 86.1
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.4e-88 329.7 180 86.1
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 87.2
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 87.2
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 4.0e-88 328.2 180 86.1
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 87.2
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 86.1
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 86.1
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 3.4e-87 325.1 181 86.2
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 84.4
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 84.4
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 83.9
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 85.6
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 85.0
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 83.9
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 83.9
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 85.6
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 85.0
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 83.9
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 85.0
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 83.3
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 83.9
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 84.4
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 83.9
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 85.0
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 83.9
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 85.0
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 4.2e-85 318.2 180 83.3
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 4.2e-85 318.2 180 83.3
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 82.2
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 83.3
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 7.1e-85 317.4 180 83.3
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.2e-84 316.6 178 83.1
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 82.2
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 83.3
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.6e-84 316.2 178 83.7
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 82.2
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 82.2
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 80.6
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 82.2
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 80.6
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 4.6e-84 314.7 180 81.7
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 4.6e-84 314.7 199 75.9
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 6.0e-84 314.3 180 82.8
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.8e-83 312.8 180 81.7
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 2.3e-83 312.4 180 80.0
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 3.9e-83 311.6 180 81.1
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 5.1e-83 311.2 180 80.0
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 8.7e-83 310.5 180 79.4
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.1e-82 310.1 180 80.0
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.9e-82 309.3 180 79.4
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 2.5e-82 308.9 180 78.9
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 7.4e-82 307.4 178 82.0
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 2.1e-81 305.8 180 79.4
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 8.1e-81 303.9 181 81.2
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 8.1e-81 303.9 178 79.2
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 1.8e-80 302.8 180 78.9
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 2.6e-79 298.9 206 72.3
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 3.4e-79 298.5 165 83.6
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 4.5e-79 298.1 180 78.9
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 5.8e-79 297.7 187 75.4
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 8.4e-78 293.9 203 70.4
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 4.2e-77 291.6 160 88.1
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 7.1e-77 290.8 159 86.2
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 2.7e-76 288.9 159 87.4
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 1.1e-74 283.5 178 75.3
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 1.6e-73 279.6 161 80.7
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 2.1e-73 279.3 160 81.2
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 8.2e-73 277.3 175 75.4
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.4e-72 276.6 174 75.3
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 5.3e-72 274.6 180 73.3
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 5.3e-72 274.6 177 72.3
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 9.0e-72 273.9 156 80.8
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 4.5e-71 271.6 172 79.7
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 2.9e-70 268.9 175 68.0
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 5.0e-70 268.1 167 77.2
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 5.0e-70 268.1 162 75.9
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.1e-69 266.9 160 76.9
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 2.1e-68 262.7 164 75.0
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 1.9e-66 256.1 175 66.3
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 4.3e-66 255.0 153 79.1
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 9.7e-66 253.8 218 62.4
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.4e-64 250.0 139 83.5
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 6.9e-64 247.7 175 64.0
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.5e-61 239.2 181 67.4
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.2e-60 236.9 139 77.7
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 3.9e-59 231.9 171 62.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 8.8e-51 204.1 114 78.9
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 2.6e-50 202.6 174 52.3
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 2.8e-49 199.1 121 75.2
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 2.0e-47 193.0 117 73.5
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 2.1e-44 183.0 130 66.2
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.7e-44 182.6 185 56.2
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.7e-44 182.6 185 56.2
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 2.4e-40 169.5 92 80.4
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.9e-37 159.8 99 73.7
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 5.5e-37 158.3 174 44.3
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 3.6e-36 155.6 113 69.0
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 8.8e-35 151.0 176 42.0
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 4.8e-33 145.2 91 73.6
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.1e-32 144.1 177 46.3
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 1.8e-32 143.3 116 59.5
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.0e-27 125.9 82 68.3
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.7e-23 112.8 71 67.6
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.3e-22 110.5 99 60.6
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.6e-20 103.6 65 76.9
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 1.4e-19 100.5 100 60.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 8.9e-19 97.8 56 87.5
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 3.4e-18 95.9 56 76.8
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 5.7e-18 95.1 46 97.8
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 6.4e-17 91.7 50 86.0
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.7e-06 57.0 45 62.2
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.7e-06 57.0 57 50.9


User provided reference genes

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