Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0114 Fragaria x ananassa HOM05D035633 ORTHO05D017928 4.2e-64 248.1 141 100.0
FvH4_5g23131 Fragaria vesca HOM05D035633 ORTHO05D017928 4.6e-63 244.6 122 100.0
FAN18G0287 Fragaria x ananassa HOM05D035633 ORTHO05D017928 2.9e-57 225.3 112 99.1
FAN04G2148 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.2e-42 176.8 150 72.7
FvH4_6g06680 Fragaria vesca HOM05D000007 ORTHO05D000039 4.2e-32 141.7 179 49.7
FvH4_6g06780 Fragaria vesca HOM05D000007 ORTHO05D017928 3.4e-26 122.1 173 45.1
FAN09G1694 Fragaria x ananassa HOM05D000007 ORTHO05D017928 7.2e-24 114.4 169 44.4
RcHm_v2.0_Chr3g0456241 Rosa chinensis HOM05D000007 ORTHO05D000039 2.0e-18 96.3 177 36.7
MD17G1255300 Malus domestica HOM05D000007 ORTHO05D000039 1.4e-14 83.6 154 39.6
MD17G1252700 Malus domestica HOM05D000007 ORTHO05D000039 3.9e-14 82.0 154 38.3
MD17G1252300 Malus domestica HOM05D000007 ORTHO05D000039 5.2e-14 81.6 157 36.3
Prupe.6G318300 Prunus persica HOM05D000007 ORTHO05D000039 8.8e-14 80.9 173 33.5
RcHm_v2.0_Chr3g0456251 Rosa chinensis HOM05D000007 ORTHO05D000039 1.5e-13 80.1 100 48.0
MD17G1255900 Malus domestica HOM05D000007 ORTHO05D000039 2.6e-13 79.3 152 39.5
Prupe.6G319000 Prunus persica HOM05D000007 ORTHO05D000039 3.3e-13 79.0 118 41.5
MD17G1251300 Malus domestica HOM05D000007 ORTHO05D000039 4.4e-13 78.6 157 37.6
MD17G1255800 Malus domestica HOM05D000007 ORTHO05D000039 4.4e-13 78.6 157 36.9
FvH4_6g06790 Fragaria vesca HOM05D000007 ORTHO05D000039 7.4e-13 77.8 170 29.4
MD17G1251200 Malus domestica HOM05D000007 ORTHO05D000039 7.4e-13 77.8 154 37.7
MD17G1254200 Malus domestica HOM05D000007 ORTHO05D000039 9.7e-13 77.4 158 36.1
FvH4_2g25660 Fragaria vesca HOM05D000007 ORTHO05D000039 1.3e-12 77.0 171 33.9
FAN09G1312 Fragaria x ananassa HOM05D000007 ORTHO05D017928 1.7e-12 76.6 78 47.4
RcHm_v2.0_Chr6g0293911 Rosa chinensis HOM05D000007 ORTHO05D000039 1.7e-12 76.6 182 33.0
MD12G1213000 Malus domestica HOM05D000007 ORTHO05D000039 2.8e-12 75.9 156 34.6
MD17G1251900 Malus domestica HOM05D000007 ORTHO05D000039 2.8e-12 75.9 154 36.4
FAN02G1412 Fragaria x ananassa HOM05D000007 ORTHO05D017928 3.7e-12 75.5 72 51.4
MD17G1253700 Malus domestica HOM05D000007 ORTHO05D000039 3.7e-12 75.5 149 36.9
Prupe.6G320600 Prunus persica HOM05D000007 ORTHO05D000039 3.7e-12 75.5 156 32.1
MD17G1253000 Malus domestica HOM05D000007 ORTHO05D000039 4.8e-12 75.1 153 37.3
FAN14G1360 Fragaria x ananassa HOM05D000007 ORTHO05D017928 6.3e-12 74.7 156 31.4
FAN15G2226 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.2e-12 74.3 71 54.9
FvH4_6g06730 Fragaria vesca HOM05D000007 ORTHO05D000039 1.4e-11 73.6 161 28.6
FAN13G2908 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.4e-11 73.6 130 33.1
MD17G1253800 Malus domestica HOM05D000007 ORTHO05D000039 1.4e-11 73.6 153 35.9
RcHm_v2.0_Chr6g0259371 Rosa chinensis HOM05D000007 ORTHO05D000039 1.4e-11 73.6 167 35.3
FAN24G0319 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.4e-11 72.8 165 33.3
FvH4_6g06820 Fragaria vesca HOM05D000007 ORTHO05D000039 3.1e-11 72.4 74 45.9
RcHm_v2.0_Chr3g0456291 Rosa chinensis HOM05D000007 ORTHO05D000039 3.1e-11 72.4 71 49.3
MD17G1251100 Malus domestica HOM05D000007 ORTHO05D000039 4.1e-11 72.0 153 37.9
RcHm_v2.0_Chr6g0293881 Rosa chinensis HOM05D000007 ORTHO05D000039 4.1e-11 72.0 76 48.7
FAN27G2778 Fragaria x ananassa HOM05D004096 ORTHO05D000039 9.1e-11 70.9 113 42.5
MD17G1256300 Malus domestica HOM05D000007 ORTHO05D000039 1.2e-10 70.5 152 34.9
RcHm_v2.0_Chr6g0262491 Rosa chinensis HOM05D000007 ORTHO05D000039 1.2e-10 70.5 76 47.4
MD00G1054600 Malus domestica HOM05D000007 ORTHO05D000039 1.6e-10 70.1 154 33.8
MD17G1256100 Malus domestica HOM05D000007 ORTHO05D000039 3.5e-10 68.9 157 33.1
Prupe.6G319800 Prunus persica HOM05D000007 ORTHO05D000039 3.5e-10 68.9 169 30.8
MD00G1149800 Malus domestica HOM05D000007 ORTHO05D000039 7.7e-10 67.8 153 36.6
RcHm_v2.0_Chr2g0111681 Rosa chinensis HOM05D000007 ORTHO05D000039 7.7e-10 67.8 148 33.1
RcHm_v2.0_Chr7g0233181 Rosa chinensis HOM05D003032 ORTHO05D000039 1.3e-09 67.0 57 56.1
MELO3C030704.2 Cucumis melo HOM05D000007 ORTHO05D000039 2.2e-09 66.2 148 31.8
MD17G1254700 Malus domestica HOM05D000007 ORTHO05D000039 2.2e-09 66.2 162 35.2
RcHm_v2.0_Chr3g0456311 Rosa chinensis HOM05D000007 ORTHO05D000039 2.2e-09 66.2 90 38.9
RcHm_v2.0_Chr3g0461521 Rosa chinensis HOM05D003032 ORTHO05D003456 2.2e-09 66.2 80 43.8
FvH4_6g06760 Fragaria vesca HOM05D000007 ORTHO05D000039 3.8e-09 65.5 156 31.4
MD17G1252200 Malus domestica HOM05D000007 ORTHO05D000039 5.0e-09 65.1 155 31.6
RcHm_v2.0_Chr3g0455991 Rosa chinensis HOM05D000007 ORTHO05D000039 6.5e-09 64.7 80 46.2
FvH4_6g06610 Fragaria vesca HOM05D000007 ORTHO05D000039 8.5e-09 64.3 161 29.8
FAN09G0220 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.5e-09 64.3 57 50.9
Prupe.6G316700 Prunus persica HOM05D000007 ORTHO05D000039 8.5e-09 64.3 170 28.8
ClCG10G015170 Citrullus lanatus HOM05D000007 ORTHO05D000039 1.1e-08 63.9 148 31.8
FAN08G0362 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.1e-08 63.9 168 28.6
FAN18G1730 Fragaria x ananassa HOM05D003032 ORTHO05D003456 1.1e-08 63.9 65 49.2
MD04G1199200 Malus domestica HOM05D000007 ORTHO05D000039 1.1e-08 63.9 167 26.9
Ciclev10011921m.g Citrus clementina HOM05D000007 ORTHO05D000039 1.5e-08 63.5 149 34.2
MD15G1153400 Malus domestica HOM05D000007 ORTHO05D000039 1.5e-08 63.5 159 35.2
FvH4_5g33841 Fragaria vesca HOM05D003032 ORTHO05D003456 2.5e-08 62.8 68 47.1
FAN02G3072 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.5e-08 62.8 57 52.6
FAN08G1675 Fragaria x ananassa HOM05D003032 ORTHO05D000039 2.5e-08 62.8 68 47.1
FAN14G2157 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.2e-08 62.4 160 29.4
FAN02G2443 Fragaria x ananassa HOM05D003032 ORTHO05D000039 4.2e-08 62.0 82 42.7
RcHm_v2.0_Chr3g0457391 Rosa chinensis HOM05D000007 ORTHO05D000039 4.2e-08 62.0 66 48.5
Duzib147G0121 Durio zibethinus HOM05D000007 ORTHO05D000039 5.5e-08 61.6 140 29.3
FvH4_5g09390 Fragaria vesca HOM05D003032 ORTHO05D003456 5.5e-08 61.6 65 47.7
RcHm_v2.0_Chr3g0456171 Rosa chinensis HOM05D000007 ORTHO05D000039 5.5e-08 61.6 164 29.3
MELO3C009862.2 Cucumis melo HOM05D000007 ORTHO05D000039 7.2e-08 61.2 146 32.2
FvH4_6g06802 Fragaria vesca HOM05D000007 ORTHO05D000039 9.4e-08 60.8 162 29.0
Gorai.008G098100 Gossypium raimondii HOM05D000007 ORTHO05D000039 9.4e-08 60.8 138 29.7
FAN02G1183 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.2e-07 60.5 161 28.6
Sed0015533 Sechium edule HOM05D000007 ORTHO05D000039 1.2e-07 60.5 144 32.6
CsaV3_3G041390 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.6e-07 60.1 151 31.1
RcHm_v2.0_Chr3g0455781 Rosa chinensis HOM05D000007 ORTHO05D000039 1.6e-07 60.1 155 28.4
Sed0008650 Sechium edule HOM05D000007 ORTHO05D000039 1.6e-07 60.1 139 33.1
Sed0024390 Sechium edule HOM05D000007 ORTHO05D000039 1.6e-07 60.1 139 33.1
Sed0025093 Sechium edule HOM05D000007 ORTHO05D000039 1.6e-07 60.1 139 33.1
FvH4_6g06840 Fragaria vesca HOM05D000007 ORTHO05D000039 2.1e-07 59.7 70 45.7
FvH4_6g07710 Fragaria vesca HOM05D000007 ORTHO05D000039 2.1e-07 59.7 57 52.6
FAN05G0929 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.1e-07 59.7 85 40.0
RcHm_v2.0_Chr3g0458451 Rosa chinensis HOM05D003032 ORTHO05D003456 2.1e-07 59.7 70 42.9
Sed0011783 Sechium edule HOM05D000007 ORTHO05D000039 2.1e-07 59.7 143 30.1
MD09G1130700 Malus domestica HOM05D000007 ORTHO05D000039 2.7e-07 59.3 151 36.4
RcHm_v2.0_Chr3g0455891 Rosa chinensis HOM05D000007 ORTHO05D000039 2.7e-07 59.3 65 46.2
COL.COLO4_12256 Corchorus olitorius HOM05D000007 ORTHO05D000039 3.6e-07 58.9 138 29.0
MD17G1256000 Malus domestica HOM05D000007 ORTHO05D000039 3.6e-07 58.9 59 49.2
MELO3C009863.2 Cucumis melo HOM05D000007 ORTHO05D000039 4.7e-07 58.5 147 29.9
Dinv34982 Davidia involucrata HOM05D000007 ORTHO05D000039 4.7e-07 58.5 137 32.8
RcHm_v2.0_Chr3g0458461 Rosa chinensis HOM05D003032 ORTHO05D003456 4.7e-07 58.5 151 29.8
Dinv30114 Davidia involucrata HOM05D000007 ORTHO05D000039 6.1e-07 58.2 124 32.3
PGSC0003DMG400003797 Solanum tuberosum HOM05D000007 ORTHO05D000017 6.1e-07 58.2 136 33.8
Thecc.10G092800 Theobroma cacao HOM05D000007 ORTHO05D000039 6.1e-07 58.2 135 31.9
Duzib114G0761 Durio zibethinus HOM05D000007 ORTHO05D000039 8.0e-07 57.8 141 29.8
FAN14G1928 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.0e-07 57.8 65 46.2
MD09G1130400 Malus domestica HOM05D000007 ORTHO05D000039 8.0e-07 57.8 150 36.7
FvH4_6g06750 Fragaria vesca HOM05D000007 ORTHO05D000039 1.0e-06 57.4 160 29.4
FvH4_6g16041 Fragaria vesca HOM05D000007 ORTHO05D000039 1.0e-06 57.4 57 47.4
FAN14G5293 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.0e-06 57.4 57 47.4
Lj7C597G11 Lonicera japonica HOM05D000007 ORTHO05D000039 1.0e-06 57.4 136 33.8
RcHm_v2.0_Chr3g0457451 Rosa chinensis HOM05D000007 ORTHO05D000039 1.0e-06 57.4 57 49.1
FvH4_6g06700 Fragaria vesca HOM05D000007 ORTHO05D000039 1.4e-06 57.0 149 28.2
Prupe.6G319300 Prunus persica HOM05D000007 ORTHO05D000039 1.4e-06 57.0 155 29.0
RcHm_v2.0_Chr2g0123521 Rosa chinensis HOM05D003032 ORTHO05D003456 1.4e-06 57.0 68 42.6
Solyc10g075010.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.4e-06 57.0 102 32.4
QL04p019471 Quercus lobata HOM05D000007 ORTHO05D000039 1.8e-06 56.6 133 30.8
ClCG10G018890 Citrullus lanatus HOM05D000007 ORTHO05D000039 3.0e-06 55.8 129 34.9
Haze_02857 Corylus avellana HOM05D000007 ORTHO05D000039 3.0e-06 55.8 80 43.8
Lj4P129T109 Lonicera japonica HOM05D000007 ORTHO05D000039 3.0e-06 55.8 134 32.1
Potri.006G170300 Populus trichocarpa HOM05D000007 ORTHO05D000039 3.0e-06 55.8 127 31.5
TAR369G0887 Trochodendron aralioides HOM05D000007 ORTHO05D001644 3.0e-06 55.8 123 30.1
Duzib187G1873 Durio zibethinus HOM05D000007 ORTHO05D000039 4.0e-06 55.5 138 28.3
FvH4_6g06690 Fragaria vesca HOM05D000007 ORTHO05D000039 4.0e-06 55.5 63 46.0
QL04p019179 Quercus lobata HOM05D000007 ORTHO05D000039 4.0e-06 55.5 131 32.1
CAN.G1209.1 Capsicum annuum HOM05D000007 ORTHO05D000017 5.2e-06 55.1 100 37.0
Gohir.D04G045600 Gossypium hirsutum HOM05D000007 ORTHO05D000039 5.2e-06 55.1 138 27.5
Gorai.012G050800 Gossypium raimondii HOM05D000007 ORTHO05D000039 5.2e-06 55.1 138 27.5
MD01G1175000 Malus domestica HOM05D003032 ORTHO05D003456 5.2e-06 55.1 71 40.8
Nitab4.5_0000191g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 5.2e-06 55.1 129 30.2
QL04p019213 Quercus lobata HOM05D000007 ORTHO05D000039 5.2e-06 55.1 130 30.8
QL04p029261 Quercus lobata HOM05D000007 ORTHO05D000039 5.2e-06 55.1 40 65.0
QL05p044326 Quercus lobata HOM05D000007 ORTHO05D000039 5.2e-06 55.1 40 65.0
QL09p022536 Quercus lobata HOM05D000007 ORTHO05D000039 5.2e-06 55.1 142 26.8
RcHm_v2.0_Chr3g0456131 Rosa chinensis HOM05D000007 ORTHO05D000039 5.2e-06 55.1 72 41.7
PGSC0003DMG400031233 Solanum tuberosum HOM05D000007 ORTHO05D000017 5.2e-06 55.1 116 31.0
Haze_02864 Corylus avellana HOM05D000007 ORTHO05D000039 6.7e-06 54.7 40 65.0
Dinv34988 Davidia involucrata HOM05D000007 ORTHO05D000039 6.7e-06 54.7 136 31.6
FvH4_5g01061 Fragaria vesca HOM05D000007 ORTHO05D000039 6.7e-06 54.7 138 26.1
FvH4_6g06590 Fragaria vesca HOM05D000007 ORTHO05D000039 6.7e-06 54.7 70 41.4
FAN14G0110 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.7e-06 54.7 70 41.4
FAN24G1551 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.7e-06 54.7 41 58.5
MD15G1167200 Malus domestica HOM05D003032 ORTHO05D003456 6.7e-06 54.7 53 49.1
Nitab4.5_0000898g0040 Nicotiana tabacum HOM05D000007 ORTHO05D000017 6.7e-06 54.7 93 38.7
QL04p036880 Quercus lobata HOM05D000007 ORTHO05D000039 6.7e-06 54.7 138 31.2
FvH4_6g06791 Fragaria vesca HOM05D000007 ORTHO05D000039 8.8e-06 54.3 69 42.0
FAN02G1746 Fragaria x ananassa HOM05D000007 ORTHO05D035760 8.8e-06 54.3 75 40.0
Peaxi162Scf00001g00418 Petunia axillaris HOM05D000007 ORTHO05D013549 8.8e-06 54.3 120 32.5


User provided reference genes

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