Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G0062 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.7e-76 289.3 143 100.0
FvH4_2g39020 Fragaria vesca HOM05D002906 ORTHO05D003211 4.4e-13 78.6 46 91.3
FAN15G0533 Fragaria x ananassa HOM05D002906 ORTHO05D003211 5.8e-13 78.2 46 91.3
RcHm_v2.0_Chr6g0302121 Rosa chinensis HOM05D002906 ORTHO05D003211 5.8e-13 78.2 46 91.3
FAN27G0160 Fragaria x ananassa HOM05D002906 ORTHO05D003211 9.9e-13 77.4 45 93.3
Prupe.1G370800 Prunus persica HOM05D002906 ORTHO05D003211 2.9e-12 75.9 46 84.8
FAN04G2271 Fragaria x ananassa HOM05D002906 ORTHO05D003211 8.3e-12 74.3 42 92.9
MD15G1017500 Malus domestica HOM05D002906 ORTHO05D003211 1.1e-11 73.9 46 82.6
FAN08G2759 Fragaria x ananassa HOM05D002906 ORTHO05D000003 2.4e-11 72.8 76 59.2
QL02p010714 Quercus lobata HOM05D002906 ORTHO05D003211 1.2e-10 70.5 46 76.1
Cfa013902 Carpinus fangiana HOM05D002906 ORTHO05D003211 2.1e-10 69.7 46 78.3
Haze_22583 Corylus avellana HOM05D002906 ORTHO05D003211 2.1e-10 69.7 46 78.3
Eucgr.F01619 Eucalyptus grandis HOM05D002906 ORTHO05D003211 2.7e-10 69.3 43 76.7
CiPaw.07G154300 Carya illinoinensis HOM05D002906 ORTHO05D003211 6.0e-10 68.2 46 76.1
TWI56G1491 Tripterygium wilfordii HOM05D002906 ORTHO05D003211 7.8e-10 67.8 46 73.9
Lj1g0001600 Lotus japonicus HOM05D002906 ORTHO05D003211 6.6e-09 64.7 43 79.1
arahy.Tifrunner.gnm1.ann1.FJTX8M Arachis hypogaea HOM05D002906 ORTHO05D003211 8.6e-09 64.3 46 76.1
arahy.Tifrunner.gnm1.ann1.G24WC3 Arachis hypogaea HOM05D002906 ORTHO05D003211 8.6e-09 64.3 46 76.1
Ca_02061_v3 Cicer arietinum L. HOM05D002906 ORTHO05D003211 8.6e-09 64.3 49 71.4
Lalb_Chr08g0246021 Lupinus albus HOM05D002906 ORTHO05D003211 1.1e-08 63.9 46 71.7
Dinv39484 Davidia involucrata HOM05D002906 ORTHO05D003211 1.5e-08 63.5 46 71.7
Medtr3g113090 Medicago truncatula HOM05D002906 ORTHO05D003211 1.9e-08 63.2 49 71.4
Psat5g013800 Pisum sativum HOM05D002906 ORTHO05D003211 1.9e-08 63.2 49 73.5
Ciclev10025097m.g Citrus clementina HOM05D002906 ORTHO05D003211 2.5e-08 62.8 46 71.7
Lsat_1_v5_gn_3_73601 Lactuca sativa HOM05D002906 ORTHO05D003211 2.5e-08 62.8 46 65.2
PSO541G4582 Papaver somniferum HOM05D002906 ORTHO05D003211 2.5e-08 62.8 46 69.6
PSO675G6928 Papaver somniferum HOM05D002906 ORTHO05D003211 2.5e-08 62.8 46 69.6
Atru.chr13.361 Acer truncatum HOM05D002906 ORTHO05D003211 3.3e-08 62.4 49 61.2
SHI08582 Sapria himalayana HOM05D002906 ORTHO05D003211 3.3e-08 62.4 46 69.6
TPR.G31196 Trifolium pratense HOM05D002906 ORTHO05D003211 3.3e-08 62.4 49 71.4
CSS0026539 Camellia sinensis var. sinensis HOM05D002906 ORTHO05D003211 4.3e-08 62.0 46 69.6
CSS0040286 Camellia sinensis var. sinensis HOM05D002906 ORTHO05D003211 4.3e-08 62.0 46 69.6
PSO386G0172 Papaver somniferum HOM05D002906 ORTHO05D003211 4.3e-08 62.0 43 72.1
Nitab4.5_0000753g0070 Nicotiana tabacum HOM05D002906 ORTHO05D003211 5.6e-08 61.6 46 65.2
Nitab4.5_0010830g0040 Nicotiana tabacum HOM05D002906 ORTHO05D003211 5.6e-08 61.6 46 65.2
Peaxi162Scf00083g01312 Petunia axillaris HOM05D002906 ORTHO05D003211 5.6e-08 61.6 45 71.1
Cpa.g.sc6.212 Carica papaya HOM05D002906 ORTHO05D003211 7.3e-08 61.2 46 67.4
Zm00001eb043710 Zea mays HOM05D002906 ORTHO05D003211 7.3e-08 61.2 43 65.1
CAN.G358.4 Capsicum annuum HOM05D002906 ORTHO05D003211 1.2e-07 60.5 46 63.0
Eucgr.J02394 Eucalyptus grandis HOM05D002906 ORTHO05D003211 1.2e-07 60.5 46 65.2
PGR083G2528 Punica granatum HOM05D002906 ORTHO05D003211 1.6e-07 60.1 42 69.0
TAR376G0802 Trochodendron aralioides HOM05D002906 ORTHO05D003211 1.6e-07 60.1 46 69.6
CANSAT01G2914 Cannabis sativa HOM05D002906 ORTHO05D003211 2.1e-07 59.7 46 67.4
ATR0661G161 Amborella trichopoda HOM05D002906 ORTHO05D003211 2.8e-07 59.3 45 66.7
Manes.01G142700 Manihot esculenta HOM05D002906 ORTHO05D003211 2.8e-07 59.3 43 67.4
Prupe.7G164900 Prunus persica HOM05D002906 ORTHO05D003211 2.8e-07 59.3 46 67.4
Sabra07G0013300 Salix brachista HOM05D002906 ORTHO05D003211 2.8e-07 59.3 43 67.4
Sed0016439 Sechium edule HOM05D002906 ORTHO05D003211 2.8e-07 59.3 43 69.8
Solyc02g084540.3 Solanum lycopersicum HOM05D002906 ORTHO05D003211 2.8e-07 59.3 46 63.0
Thecc.08G037500 Theobroma cacao HOM05D002906 ORTHO05D003211 3.6e-07 58.9 46 65.2
Carub.0003s3223 Capsella rubella HOM05D002906 ORTHO05D003211 4.7e-07 58.5 43 65.1
CARHR108580 Cardamine hirsuta HOM05D002906 ORTHO05D003211 4.7e-07 58.5 43 62.8
Dinv40056 Davidia involucrata HOM05D002906 ORTHO05D003211 4.7e-07 58.5 46 65.2
Gohir.A11G178000 Gossypium hirsutum HOM05D002906 ORTHO05D003211 4.7e-07 58.5 45 64.4
Gohir.D11G185800 Gossypium hirsutum HOM05D002906 ORTHO05D003211 4.7e-07 58.5 45 64.4
Gorai.007G197400 Gossypium raimondii HOM05D002906 ORTHO05D003211 4.7e-07 58.5 45 64.4
HanXRQChr15g0483831 Helianthus annuus HOM05D002906 ORTHO05D003211 4.7e-07 58.5 46 58.7
Lj4g0005742 Lotus japonicus HOM05D002906 ORTHO05D003211 4.7e-07 58.5 49 59.2
Os03g0112800 Oryza sativa ssp. japonica HOM05D002906 ORTHO05D003211 4.7e-07 58.5 43 65.1
Rhsim08G0035400 Rhododendron simsii HOM05D002906 ORTHO05D003211 4.7e-07 58.5 43 67.4
Sc03g0003420 Simmondsia chinensis HOM05D002906 ORTHO05D003211 4.7e-07 58.5 45 68.9
PGSC0003DMG400003621 Solanum tuberosum HOM05D002906 ORTHO05D003211 4.7e-07 58.5 46 60.9
THA.LOC104804256 Tarenaya hassleriana HOM05D002906 ORTHO05D003211 4.7e-07 58.5 43 65.1
Zm00001eb404060 Zea mays HOM05D002906 ORTHO05D003211 4.7e-07 58.5 43 65.1
Aqoxy5G01496 Aquilegia oxysepala HOM05D002906 ORTHO05D003211 6.2e-07 58.2 46 63.0
arahy.Tifrunner.gnm1.ann1.S8WQY8 Arachis hypogaea HOM05D000100 ORTHO05D087400 6.2e-07 58.2 43 69.8
BcaB07g31685 Brassica carinata HOM05D002906 ORTHO05D003211 6.2e-07 58.2 43 62.8
Glyma.06G026800 Glycine max HOM05D002906 ORTHO05D003211 6.2e-07 58.2 45 66.7
Nn6g32236 Nelumbo nucifera HOM05D002906 ORTHO05D003211 6.2e-07 58.2 46 63.0
AL3G51270 Arabidopsis lyrata HOM05D002906 ORTHO05D003211 8.1e-07 57.8 43 62.8
CiPaw.07G055900 Carya illinoinensis HOM05D002906 ORTHO05D003211 8.1e-07 57.8 46 63.0
Thhalv10022586m.g Eutrema salsugineum HOM05D002906 ORTHO05D003211 8.1e-07 57.8 43 62.8
HanXRQChr14g0441611 Helianthus annuus HOM05D002906 ORTHO05D003211 8.1e-07 57.8 45 64.4
Potri.007G016100 Populus trichocarpa HOM05D002906 ORTHO05D003211 8.1e-07 57.8 43 65.1
Sopen02g029210 Solanum pennellii HOM05D002906 ORTHO05D003211 8.1e-07 57.8 46 60.9
TWI09G0057 Tripterygium wilfordii HOM05D002906 ORTHO05D003211 8.1e-07 57.8 43 62.8
Ca_22361_v3 Cicer arietinum L. HOM05D002906 ORTHO05D003211 1.1e-06 57.4 49 57.1
Cc07_g10390 Coffea canephora HOM05D002906 ORTHO05D003211 1.1e-06 57.4 43 67.4
Duzib116G0247 Durio zibethinus HOM05D002906 ORTHO05D003211 1.1e-06 57.4 46 67.4
ECA246G3409 Erigeron canadensis HOM05D002906 ORTHO05D003211 1.1e-06 57.4 43 60.5
Thhalv10024597m.g Eutrema salsugineum HOM05D002906 ORTHO05D003211 1.1e-06 57.4 43 62.8
Lalb_Chr09g0333081 Lupinus albus HOM05D002906 ORTHO05D003211 1.1e-06 57.4 46 60.9
Medtr8g076250 Medicago truncatula HOM05D002906 ORTHO05D003211 1.1e-06 57.4 49 57.1
Oeu037736.3 Olea europaea HOM05D002906 ORTHO05D003211 1.1e-06 57.4 46 60.9
Psat4g098240 Pisum sativum HOM05D002906 ORTHO05D003211 1.1e-06 57.4 49 57.1
PGR102G3213 Punica granatum HOM05D002906 ORTHO05D003211 1.1e-06 57.4 49 59.2
Hund16474 Selenicereus undatus HOM05D002906 ORTHO05D003211 1.1e-06 57.4 43 65.1
TPR.G33359 Trifolium pratense HOM05D002906 ORTHO05D003211 1.1e-06 57.4 49 57.1
GSVIVG01018828001 Vitis vinifera HOM05D002906 ORTHO05D003211 1.1e-06 57.4 42 69.0
Atru.chr3.764 Acer truncatum HOM05D002906 ORTHO05D003211 1.4e-06 57.0 46 63.0
Actinidia31016 Actinidia chinensis HOM05D002906 ORTHO05D003211 1.4e-06 57.0 52 53.8
Ah.03g141340 Amaranthus hybridus HOM05D002906 ORTHO05D003211 1.4e-06 57.0 45 66.7
Ah.14g080530 Amaranthus hybridus HOM05D002906 ORTHO05D003211 1.4e-06 57.0 45 66.7
Haze_03810 Corylus avellana HOM05D002906 ORTHO05D003211 1.4e-06 57.0 88 45.5
MD15G1249300 Malus domestica HOM05D002906 ORTHO05D003211 1.4e-06 57.0 45 66.7
QL06p034000 Quercus lobata HOM05D002906 ORTHO05D003211 1.4e-06 57.0 45 64.4
vmacro22094 Vaccinium macrocarpon HOM05D002906 ORTHO05D003211 1.4e-06 57.0 43 65.1
arahy.Tifrunner.gnm1.ann1.E8YRIM Arachis hypogaea HOM05D002906 ORTHO05D003211 1.8e-06 56.6 46 60.9
arahy.Tifrunner.gnm1.ann1.Z4JI4R Arachis hypogaea HOM05D002906 ORTHO05D003211 1.8e-06 56.6 46 60.9
BcaC04g22930 Brassica carinata HOM05D002906 ORTHO05D003211 1.8e-06 56.6 43 60.5
A09p11710 Brassica napus HOM05D002906 ORTHO05D003211 1.8e-06 56.6 43 60.5
C09p13780 Brassica napus HOM05D002906 ORTHO05D003211 1.8e-06 56.6 43 60.5
BolC9t54266H Brassica oleracea HOM05D002906 ORTHO05D003211 1.8e-06 56.6 43 60.5
BraA09t36816Z Brassica rapa HOM05D002906 ORTHO05D003211 1.8e-06 56.6 43 60.5
ClCG07G008870 Citrullus lanatus HOM05D002906 ORTHO05D003211 1.8e-06 56.6 46 60.9
Ciclev10003998m.g Citrus clementina HOM05D002906 ORTHO05D003211 1.8e-06 56.6 48 64.6
MELO3C017538.2 Cucumis melo HOM05D002906 ORTHO05D003211 1.8e-06 56.6 46 60.9
CsaV3_4G005320 Cucumis sativus L. HOM05D002906 ORTHO05D003211 1.8e-06 56.6 46 60.9
Nitab4.5_0002221g0070 Nicotiana tabacum HOM05D002906 ORTHO05D003211 1.8e-06 56.6 46 63.0
Nitab4.5_0010854g0010 Nicotiana tabacum HOM05D002906 ORTHO05D003211 1.8e-06 56.6 46 63.0
RcHm_v2.0_Chr2g0099941 Rosa chinensis HOM05D002906 ORTHO05D003211 1.8e-06 56.6 45 64.4
Sed0023539 Sechium edule HOM05D002906 ORTHO05D003211 1.8e-06 56.6 45 66.7
Aqoxy6G02389 Aquilegia oxysepala HOM05D002906 ORTHO05D003211 2.4e-06 56.2 46 58.7
Glyma.02G050700 Glycine max HOM05D002906 ORTHO05D003211 2.4e-06 56.2 49 57.1
Lj2C419G3 Lonicera japonica HOM05D002906 ORTHO05D003211 2.4e-06 56.2 45 68.9
Manes.02G101100 Manihot esculenta HOM05D002906 ORTHO05D003211 2.4e-06 56.2 43 62.8
Os10g0512100 Oryza sativa ssp. japonica HOM05D002906 ORTHO05D003211 2.4e-06 56.2 43 65.1
Sp3g31530 Schrenkiella parvula HOM05D002906 ORTHO05D003211 2.4e-06 56.2 43 60.5
SGA_v2.0_scaffold51G18781 Striga asiatica HOM05D002906 ORTHO05D003211 2.4e-06 56.2 45 62.2
AUR62007649 Chenopodium quinoa HOM05D002906 ORTHO05D003211 3.1e-06 55.8 45 66.7
SalBow8G0898 Salvia bowleyana HOM05D002906 ORTHO05D003211 3.1e-06 55.8 45 62.2
Hund14028 Selenicereus undatus HOM05D002906 ORTHO05D003211 3.1e-06 55.8 42 66.7
Solyc03g033640.3 Solanum lycopersicum HOM05D002906 ORTHO05D003211 3.1e-06 55.8 46 60.9
Sopen03g006430 Solanum pennellii HOM05D002906 ORTHO05D003211 3.1e-06 55.8 46 60.9
AT2G18100 Arabidopsis thaliana HOM05D002906 ORTHO05D003211 4.0e-06 55.5 43 58.1
CSS0044957 Camellia sinensis var. sinensis HOM05D002906 ORTHO05D003211 4.0e-06 55.5 46 58.7
FAN26G0004 Fragaria x ananassa HOM05D002906 ORTHO05D003211 4.0e-06 55.5 46 63.0
FAN28G1899 Fragaria x ananassa HOM05D002906 ORTHO05D003211 4.0e-06 55.5 46 63.0
Hma1.2p1_0743F.1_g211410 Hydrangea macrophylla HOM05D002906 ORTHO05D003211 4.0e-06 55.5 45 62.2
PGSC0003DMG400022538 Solanum tuberosum HOM05D002906 ORTHO05D003211 4.0e-06 55.5 46 60.9
EL10As8g23854 Beta vulgaris HOM05D002906 ORTHO05D003211 5.2e-06 55.1 45 64.4
Cfa006939 Carpinus fangiana HOM05D002906 ORTHO05D003211 5.2e-06 55.1 45 64.4
Glyma.16G131000 Glycine max HOM05D002906 ORTHO05D003211 5.2e-06 55.1 49 55.1
SalBow5G2983 Salvia bowleyana HOM05D002906 ORTHO05D003211 5.2e-06 55.1 43 62.8
SalBow6G2156 Salvia bowleyana HOM05D002906 ORTHO05D003211 5.2e-06 55.1 43 62.8
arahy.Tifrunner.gnm1.ann1.A2FF76 Arachis hypogaea HOM05D002906 ORTHO05D003211 6.8e-06 54.7 43 60.5
arahy.Tifrunner.gnm1.ann1.K7AB56 Arachis hypogaea HOM05D002906 ORTHO05D003211 6.8e-06 54.7 43 60.5
arahy.Tifrunner.gnm1.ann1.W54CWJ Arachis hypogaea HOM05D002906 ORTHO05D003211 6.8e-06 54.7 46 63.0
BcaNung00749 Brassica carinata HOM05D002906 ORTHO05D003211 6.8e-06 54.7 43 60.5
A01p02550 Brassica napus HOM05D002906 ORTHO05D003211 6.8e-06 54.7 43 60.5
C01p02730 Brassica napus HOM05D002906 ORTHO05D003211 6.8e-06 54.7 43 60.5
BolC1t00263H Brassica oleracea HOM05D002906 ORTHO05D003211 6.8e-06 54.7 43 60.5
BraA01t00241Z Brassica rapa HOM05D002906 ORTHO05D003211 6.8e-06 54.7 43 60.5
CARHR244610 Cardamine hirsuta HOM05D002906 ORTHO05D003211 6.8e-06 54.7 43 60.5
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 6.8e-06 54.7 45 57.8
Migut.H02482 Erythranthe guttata HOM05D002906 ORTHO05D003211 6.8e-06 54.7 46 56.5
FvH4_1g12180 Fragaria vesca HOM05D002906 ORTHO05D003211 6.8e-06 54.7 45 64.4
FAN19G1383 Fragaria x ananassa HOM05D002906 ORTHO05D003211 6.8e-06 54.7 45 64.4
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 6.8e-06 54.7 45 64.4
Lsat_1_v5_gn_2_78381 Lactuca sativa HOM05D002906 ORTHO05D003211 6.8e-06 54.7 45 60.0
Phvul.003G259400 Phaseolus vulgaris HOM05D002906 ORTHO05D003211 6.8e-06 54.7 49 55.1
Sp7g33950 Schrenkiella parvula HOM05D002906 ORTHO05D003211 6.8e-06 54.7 43 60.5
VMungo0251G0953 Vigna mungo HOM05D002906 ORTHO05D003211 6.8e-06 54.7 49 55.1
VMungo1309G0619 Vigna mungo HOM05D002906 ORTHO05D003211 6.8e-06 54.7 46 58.7
Aa31LG8G15270 Aethionema arabicum HOM05D002906 ORTHO05D003211 8.9e-06 54.3 43 60.5
Ca_24895_v3 Cicer arietinum L. HOM05D002906 ORTHO05D003211 8.9e-06 54.3 43 62.8
Phvul.009G014300 Phaseolus vulgaris HOM05D002906 ORTHO05D003211 8.9e-06 54.3 46 58.7
Thecc.01G023300 Theobroma cacao HOM05D002906 ORTHO05D003211 8.9e-06 54.3 46 58.7


User provided reference genes

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