Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.4e-177 626.3 358 100.0
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 4.4e-171 604.7 358 93.0
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 1.7e-170 602.8 359 95.8
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.7e-170 602.8 358 93.9
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 4.9e-170 601.3 359 95.5
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 3.1e-79 299.7 373 59.8
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.3e-77 294.3 373 58.4
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 2.2e-77 293.5 375 58.7
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 3.1e-71 273.1 371 57.7
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 5.8e-70 268.9 376 55.1
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 1.7e-69 267.3 382 55.5
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 2.2e-69 266.9 382 57.9
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 2.2e-69 266.9 376 52.7
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 2.2e-69 266.9 365 55.6
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 1.4e-68 264.2 378 56.6
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.1e-67 260.4 353 56.1
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 1.5e-65 254.2 380 51.3
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 1.9e-65 253.8 376 54.5
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 2.5e-65 253.4 381 51.4
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 5.6e-65 252.3 386 53.6
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 1.6e-64 250.8 374 56.1
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 2.8e-64 250.0 375 54.9
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 4.7e-64 249.2 368 50.8
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 8.1e-64 248.4 361 55.4
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 1.1e-63 248.1 341 58.4
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.4e-63 247.7 372 55.1
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 2.4e-63 246.9 395 51.1
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 2.4e-63 246.9 371 53.1
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 3.1e-63 246.5 370 55.9
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 1.2e-62 244.6 366 53.8
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 1.5e-62 244.2 359 51.5
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 2.6e-62 243.4 359 54.0
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 2.6e-62 243.4 369 52.6
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 3.4e-62 243.0 367 51.2
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 3.4e-62 243.0 366 53.6
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 3.4e-62 243.0 371 49.3
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 5.8e-62 242.3 366 54.1
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 9.9e-62 241.5 370 53.8
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 1.7e-61 240.7 375 53.6
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 4.9e-61 239.2 357 51.8
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 1.4e-60 237.7 350 52.6
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 2.4e-60 236.9 357 54.6
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 3.2e-60 236.5 378 52.6
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 5.4e-60 235.7 342 53.5
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 9.2e-60 235.0 388 50.5
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 2.1e-59 233.8 378 53.2
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 2.1e-59 233.8 327 53.8
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 2.1e-59 233.8 371 51.5
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 4.6e-59 232.6 377 54.6
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 7.8e-59 231.9 359 54.0
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 1.3e-58 231.1 380 51.3
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 1.7e-58 230.7 405 50.4
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 2.3e-58 230.3 351 53.3
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 1.5e-57 227.6 362 51.4
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 2.5e-57 226.9 372 53.8
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 2.5e-57 226.9 362 51.4
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 1.2e-56 224.6 353 55.0
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 6.2e-56 222.2 377 49.6
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 1.8e-55 220.7 338 50.3
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 4.0e-55 219.5 360 50.6
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 4.4e-54 216.1 366 48.9
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 7.1e-52 208.8 354 46.6
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 4.6e-51 206.1 380 50.0
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 4.6e-51 206.1 378 45.8
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 5.1e-50 202.6 343 52.2
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 1.1e-47 194.9 346 52.3
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 3.1e-47 193.4 371 49.6
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 3.1e-47 193.4 341 51.3
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 5.3e-47 192.6 356 46.3
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 5.3e-47 192.6 353 50.4
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 5.8e-46 189.1 316 49.7
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 5.8e-46 189.1 381 47.2
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.3e-45 188.0 285 53.3
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 1.7e-45 187.6 343 51.9
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 1.7e-45 187.6 385 46.8
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 2.2e-45 187.2 353 49.3
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 4.9e-45 186.0 340 50.6
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 1.9e-44 184.1 343 51.0
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 2.1e-43 180.6 340 50.0
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 7.9e-43 178.7 337 50.4
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 7.9e-43 178.7 337 50.4
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 1.0e-42 178.3 340 49.7
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 1.0e-42 178.3 340 49.7
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 1.3e-42 177.9 358 43.9
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 2.3e-42 177.2 397 41.6
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 5.6e-41 172.6 340 50.0
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 5.6e-41 172.6 348 46.8
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 6.2e-40 169.1 365 41.1
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 4.0e-39 166.4 358 46.6
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 9.9e-38 161.8 346 43.9
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 6.4e-37 159.1 347 43.5
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 1.4e-36 157.9 374 40.4
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 1.9e-36 157.5 375 45.1
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 3.2e-36 156.8 365 45.2
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 5.5e-36 156.0 355 41.1
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 1.6e-35 154.5 343 42.3
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 2.1e-35 154.1 337 45.7
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 7.9e-35 152.1 377 43.0
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 2.3e-34 150.6 360 39.7
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 8.7e-34 148.7 345 43.8
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 1.9e-33 147.5 337 44.8
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 2.5e-33 147.1 345 44.1
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 6.2e-32 142.5 376 36.2
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.4e-31 141.4 349 41.8
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 6.5e-29 132.5 259 44.8
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 5.5e-28 129.4 350 42.9
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.2e-27 128.3 151 51.0
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 1.0e-26 125.2 366 39.9
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 1.3e-26 124.8 361 41.3
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 6.7e-26 122.5 235 49.4
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 4.3e-25 119.8 180 46.1
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 2.2e-24 117.5 172 49.4
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 4.8e-24 116.3 349 32.7
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 2.6e-22 110.5 354 37.3
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 2.9e-21 107.1 233 42.1
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 7.9e-19 99.0 188 45.2
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 1.8e-18 97.8 97 62.9
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 8.2e-16 89.0 227 37.9
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 4.1e-15 86.7 91 57.1
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 5.0e-13 79.7 92 73.9
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 2.1e-11 74.3 398 29.1
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 3.9e-10 70.1 213 35.2
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 9.7e-09 65.5 373 27.9
PGR142G1446 Punica granatum HOM05D002337 ORTHO05D002412 2.8e-08 63.9 64 56.2
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 4.1e-07 60.1 351 27.4
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.3e-07 59.7 304 27.3
Nn2g12462 Nelumbo nucifera HOM05D006303 ORTHO05D008007 5.3e-07 59.7 91 44.0
Rhsim05G0185600 Rhododendron simsii HOM05D002337 ORTHO05D002412 5.3e-07 59.7 52 57.7
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 7.0e-07 59.3 367 26.4
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 9.1e-07 58.9 345 26.4
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.2e-06 58.5 350 25.4
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.2e-06 58.5 350 25.4
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.2e-06 58.5 359 27.9
CSS0012314 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 2.0e-06 57.8 52 55.8
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 2.0e-06 57.8 325 27.7
C04p10660 Brassica napus HOM05D002337 ORTHO05D002412 3.5e-06 57.0 64 53.1
CANSAT56G1162 Cannabis sativa HOM05D002337 ORTHO05D002412 3.5e-06 57.0 52 61.5
CANSAT56G3693 Cannabis sativa HOM05D002337 ORTHO05D002412 3.5e-06 57.0 52 61.5
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 4.5e-06 56.6 359 25.9
THA.LOC104823436 Tarenaya hassleriana HOM05D002337 ORTHO05D002412 4.5e-06 56.6 57 59.6
BcaB01g03779 Brassica carinata HOM05D002337 ORTHO05D002412 5.9e-06 56.2 52 57.7
BcaB02g09285 Brassica carinata HOM05D002337 ORTHO05D002412 5.9e-06 56.2 64 53.1
A03p20620 Brassica napus HOM05D002337 ORTHO05D002412 5.9e-06 56.2 72 50.0
BolC3t14817H Brassica oleracea HOM05D002337 ORTHO05D002412 5.9e-06 56.2 52 57.7
BraA03t11304Z Brassica rapa HOM05D002337 ORTHO05D002412 5.9e-06 56.2 72 50.0
BraA05t19825Z Brassica rapa HOM05D002337 ORTHO05D002412 5.9e-06 56.2 64 51.6
Carub.0004s1928 Capsella rubella HOM05D002337 ORTHO05D002412 5.9e-06 56.2 73 49.3
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 5.9e-06 56.2 349 26.6
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 5.9e-06 56.2 350 27.1
AL4G33760 Arabidopsis lyrata HOM05D002337 ORTHO05D002412 7.7e-06 55.8 53 58.5
AL4G34370 Arabidopsis lyrata HOM05D002337 ORTHO05D002412 7.7e-06 55.8 53 58.5
AT2G37380 Arabidopsis thaliana HOM05D002337 ORTHO05D002412 7.7e-06 55.8 53 58.5
A05p08570 Brassica napus HOM05D002337 ORTHO05D002412 7.7e-06 55.8 64 51.6
C03p24240 Brassica napus HOM05D002337 ORTHO05D002412 7.7e-06 55.8 52 57.7
BolC4t22658H Brassica oleracea HOM05D002337 ORTHO05D002412 7.7e-06 55.8 64 51.6
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 7.7e-06 55.8 104 42.3
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 7.7e-06 55.8 314 26.8
TAR623G1231 Trochodendron aralioides HOM05D002337 ORTHO05D002412 7.7e-06 55.8 59 57.6
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 7.7e-06 55.8 365 26.6


User provided reference genes

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