Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.7e-84 315.5 181 100.0
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.8e-81 305.4 181 97.8
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 7.0e-72 274.2 181 89.0
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.9e-71 271.2 182 88.5
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.8e-57 225.7 191 77.5
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.0e-35 154.1 189 60.3
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.9e-32 143.3 178 55.1
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.9e-32 143.3 179 62.0
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.6e-31 140.2 169 48.5
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 2.7e-31 139.4 172 58.7
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.7e-31 139.4 183 50.3
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.7e-31 139.4 183 50.3
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.5e-31 139.0 182 58.8
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.0e-30 137.5 188 49.5
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.1e-29 134.0 181 54.7
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.1e-29 134.0 171 50.3
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.1e-29 134.0 173 48.6
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.5e-29 133.7 171 49.1
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 2.5e-29 132.9 178 56.2
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.3e-29 132.5 185 49.7
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 3.3e-29 132.5 144 59.7
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 4.3e-29 132.1 177 54.8
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 7.3e-29 131.3 173 48.0
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 9.5e-29 131.0 189 54.0
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 4.7e-28 128.6 170 48.2
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 8.0e-28 127.9 183 55.2
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 3.1e-27 125.9 176 50.6
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.2e-26 124.0 173 46.2
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.2e-26 124.0 174 49.4
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.5e-26 123.6 175 46.3
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 2.6e-26 122.9 177 46.3
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.4e-26 122.5 143 57.3
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.4e-26 122.1 168 50.0
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.1e-24 117.5 179 44.1
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.4e-24 117.1 179 52.0
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.4e-24 117.1 182 46.7
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 1.2e-23 114.0 175 53.7
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.2e-23 114.0 184 51.6
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.2e-23 114.0 175 49.7
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 3.5e-23 112.5 180 43.3
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.0e-22 110.9 181 51.4
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.0e-22 110.9 180 49.4
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.3e-22 110.5 187 43.3
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 1.3e-22 110.5 168 46.4
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.7e-22 110.2 183 49.2
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.7e-22 110.2 136 57.4
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 3.9e-22 109.0 190 43.7
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.1e-21 107.5 191 46.1
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 4.3e-21 105.5 179 44.1
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 9.5e-21 104.4 196 42.9
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.2e-20 104.0 182 44.5
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.2e-20 104.0 182 42.9
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.6e-20 103.6 171 43.3
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.1e-19 100.9 179 45.3
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 1.4e-19 100.5 187 46.0
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.8e-19 100.1 190 41.6
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.8e-19 100.1 195 46.2
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.8e-19 100.1 195 46.2
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 2.3e-19 99.8 191 40.8
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-19 99.8 187 43.9
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-19 99.8 187 43.9
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 6.8e-19 98.2 190 40.0
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 8.9e-19 97.8 193 46.6
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-18 97.4 188 46.3
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.2e-18 97.4 194 40.2
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 1.2e-18 97.4 188 46.3
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.0e-18 96.7 131 46.6
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 2.0e-18 96.7 185 42.7
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.0e-18 96.7 188 45.2
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 2.0e-18 96.7 185 42.7
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.0e-18 96.7 188 45.2
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.4e-18 95.9 133 55.6
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.4e-18 95.9 186 41.9
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 3.4e-18 95.9 193 48.2
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 4.4e-18 95.5 188 43.6
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 4.4e-18 95.5 193 45.6
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 4.4e-18 95.5 185 42.2
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 4.4e-18 95.5 193 44.6
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 4.4e-18 95.5 185 42.2
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 4.4e-18 95.5 154 47.4
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 5.8e-18 95.1 186 40.9
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 7.5e-18 94.7 190 47.4
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 7.5e-18 94.7 190 41.1
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 7.5e-18 94.7 190 41.1
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 7.5e-18 94.7 190 41.1
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 7.5e-18 94.7 169 42.6
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 7.5e-18 94.7 200 42.0
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 9.9e-18 94.4 130 48.5
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.7e-17 93.6 196 44.4
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 2.9e-17 92.8 188 45.7
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.9e-17 92.8 186 44.6
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 3.7e-17 92.4 193 40.4
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 6.4e-17 91.7 156 50.6
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 6.4e-17 91.7 189 40.7
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 8.3e-17 91.3 181 39.8
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 8.3e-17 91.3 189 40.2
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-16 90.9 150 43.3
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.1e-16 90.9 184 43.5
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.4e-16 90.5 192 41.7
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 1.9e-16 90.1 203 36.5
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.9e-16 90.1 85 58.8
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 1.9e-16 90.1 173 47.4
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 2.4e-16 89.7 179 40.8
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.4e-16 89.7 162 45.1
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 3.2e-16 89.4 186 44.1
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 4.1e-16 89.0 187 42.2
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 5.4e-16 88.6 189 43.4
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.4e-16 88.6 159 42.1
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.4e-16 88.6 154 51.9
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 5.4e-16 88.6 166 42.2
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 9.2e-16 87.8 179 39.7
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 9.2e-16 87.8 176 47.2
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.6e-15 87.0 155 42.6
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.6e-15 87.0 133 49.6
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.6e-15 87.0 179 40.2
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 1.6e-15 87.0 182 38.5
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 2.1e-15 86.7 173 46.8
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.7e-15 86.3 180 41.1
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.6e-15 85.5 153 49.7
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 7.8e-15 84.7 177 40.7
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-14 83.2 153 39.2
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-14 83.2 153 39.2
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 3.0e-14 82.8 69 62.3
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 3.0e-14 82.8 128 46.1
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 3.9e-14 82.4 153 39.2
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 3.9e-14 82.4 153 39.2
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.9e-14 82.4 74 63.5
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.1e-13 80.9 170 41.2
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.5e-13 80.5 176 38.1
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.5e-13 80.5 176 39.2
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.5e-13 80.5 82 57.3
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 1.9e-13 80.1 176 38.1
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 2.5e-13 79.7 67 62.7
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 7.3e-13 78.2 77 58.4
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 9.6e-13 77.8 79 57.0
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.6e-12 77.0 172 37.2
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 6.2e-12 75.1 131 39.7
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 5.8e-10 68.6 182 33.0
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 4.9e-09 65.5 76 52.6
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 3.2e-08 62.8 168 33.3
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 4.2e-08 62.4 162 41.4
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 1.6e-07 60.5 132 40.9
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 6.0e-07 58.5 73 52.1
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.0e-06 57.8 181 37.0


User provided reference genes

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