Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.5e-158 562.0 273 100.0
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 4.2e-153 544.7 272 97.4
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 9.3e-153 543.5 272 97.4
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 2.2e-146 522.3 272 92.6
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.0e-130 470.3 238 97.1
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 2.7e-128 462.2 272 80.5
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 4.1e-124 448.4 272 80.1
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 7.0e-108 394.4 272 66.9
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.2e-107 393.7 271 67.5
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.2e-107 393.7 272 66.2
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 2.6e-107 392.5 273 67.8
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 3.5e-107 392.1 272 67.3
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 5.0e-106 388.3 272 68.0
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.1e-105 387.1 272 66.9
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.1e-105 387.1 272 67.6
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 4.2e-105 385.2 271 67.2
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 4.2e-105 385.2 271 67.5
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 1.6e-104 383.3 271 67.9
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 1.0e-103 380.6 271 66.4
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.0e-103 380.6 272 64.7
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 3.0e-103 379.0 274 65.0
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 5.2e-103 378.3 272 66.9
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 5.2e-103 378.3 272 65.1
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 8.8e-103 377.5 272 66.5
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 1.5e-102 376.7 271 65.7
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.0e-102 376.3 272 67.3
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 5.7e-102 374.8 272 63.6
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 5.7e-102 374.8 272 64.0
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 7.4e-102 374.4 272 63.2
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.7e-102 374.0 272 63.6
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 1.3e-101 373.6 272 62.9
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 1.3e-101 373.6 272 62.5
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.2e-101 372.9 272 66.9
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 8.2e-101 370.9 313 59.1
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.2e-101 370.9 272 66.9
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 8.2e-101 370.9 271 65.3
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.4e-100 370.2 273 63.7
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.4e-100 370.2 272 61.8
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 2.4e-100 369.4 273 63.4
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 9.1e-100 367.5 276 64.1
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 3.5e-99 365.5 272 63.6
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 4.5e-99 365.2 272 63.6
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 7.7e-99 364.4 272 64.3
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 1.0e-98 364.0 277 64.6
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.7e-98 363.2 274 62.4
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 8.5e-98 360.9 274 62.4
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 8.5e-98 360.9 272 65.1
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 2.5e-97 359.4 277 63.9
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 5.5e-97 358.2 270 63.3
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.2e-96 357.1 272 61.4
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 1.6e-96 356.7 272 60.7
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 2.7e-96 355.9 272 58.8
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 3.6e-96 355.5 274 62.8
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.0e-95 354.0 272 60.7
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 1.4e-95 353.6 272 61.8
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.4e-95 353.6 272 59.6
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 1.8e-95 353.2 271 62.0
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 2.3e-95 352.8 277 62.8
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 3.0e-95 352.4 275 60.7
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.0e-95 352.1 292 58.9
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 6.7e-95 351.3 300 59.7
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 6.7e-95 351.3 300 59.7
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 6.7e-95 351.3 270 62.2
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.2e-94 350.5 272 58.5
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.2e-94 350.5 273 62.6
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.5e-94 350.1 273 61.5
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.5e-94 350.1 273 61.5
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 3.3e-94 349.0 270 61.9
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.3e-93 347.1 270 62.2
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 8.3e-93 344.4 272 59.9
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 1.4e-92 343.6 276 61.6
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 1.4e-92 343.6 274 62.8
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.4e-92 343.6 273 59.7
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 5.9e-91 338.2 272 61.0
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 7.7e-91 337.8 272 59.9
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.3e-90 337.0 293 56.3
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.7e-90 336.7 270 60.4
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.7e-90 336.7 272 61.4
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 2.2e-90 336.3 272 58.1
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.1e-89 334.0 276 58.3
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 1.5e-89 333.6 278 58.6
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.5e-89 333.6 273 60.1
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.9e-89 333.2 272 58.8
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.5e-89 332.8 272 60.7
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 2.5e-89 332.8 272 59.9
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 3.2e-89 332.4 273 58.2
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.2e-89 332.0 245 61.6
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 9.4e-89 330.9 284 57.7
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 8.0e-88 327.8 273 56.4
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 8.0e-88 327.8 296 55.7
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.3e-87 326.2 272 57.0
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 3.0e-87 325.9 273 57.1
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 4.0e-87 325.5 357 51.5
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.0e-87 325.5 272 58.5
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.5e-86 323.6 272 56.6
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 3.4e-86 322.4 273 58.2
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 7.5e-86 321.2 273 57.1
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 9.8e-86 320.9 275 60.0
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 9.8e-86 320.9 280 55.4
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 8.3e-85 317.8 273 58.2
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-84 317.4 273 57.5
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.1e-84 317.4 273 57.5
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.8e-84 316.6 273 55.7
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 2.4e-84 316.2 271 56.8
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 7.0e-84 314.7 273 56.0
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 3.5e-83 312.4 269 56.9
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.7e-82 310.1 270 57.0
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 3.8e-82 308.9 271 57.6
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 5.0e-82 308.5 270 57.8
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 1.9e-81 306.6 271 55.4
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 4.2e-81 305.4 270 56.7
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 9.5e-81 304.3 273 57.1
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 8.9e-79 297.7 273 54.9
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 2.6e-78 296.2 271 54.6
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 2.6e-78 296.2 271 54.6
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 5.7e-78 295.0 271 54.2
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 5.7e-78 295.0 271 55.4
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.2e-77 293.1 272 53.7
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 2.8e-77 292.7 248 56.0
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.6e-75 287.0 272 53.3
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 3.5e-75 285.8 272 52.9
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 5.9e-75 285.0 179 69.8
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.0e-74 282.0 272 52.6
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 8.6e-74 281.2 272 52.2
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.1e-73 280.8 272 54.4
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.1e-72 276.6 275 53.8
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 1.0e-71 274.2 272 53.3
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 1.2e-70 270.8 271 53.1
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 7.5e-70 268.1 271 52.8
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 7.5e-70 268.1 272 51.1
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.7e-69 266.9 271 52.0
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 2.2e-69 266.5 271 52.4
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 2.9e-69 266.2 272 52.2
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 4.9e-69 265.4 203 63.5
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 8.3e-69 264.6 203 59.1
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.9e-68 263.5 271 50.6
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.4e-63 247.3 185 60.5
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.4e-63 247.3 258 53.1
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.3e-63 246.5 196 61.7
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.8e-63 245.0 175 62.9
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.5e-62 243.8 192 58.3
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 5.8e-62 241.9 156 67.3
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 3.2e-60 236.1 279 45.9
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 2.8e-56 223.0 262 44.7
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 4.7e-56 222.2 285 42.8
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 5.8e-54 215.3 181 61.9
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 2.9e-53 213.0 286 40.9
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 2.9e-53 213.0 285 41.8
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.4e-52 210.7 272 47.8
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 4.6e-51 205.7 176 56.2
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.1e-33 147.9 117 59.8
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.9e-33 147.1 111 63.1
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 5.6e-33 145.6 313 31.3
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 1.0e-26 124.8 227 34.8
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 4.8e-24 115.9 135 45.2
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.8e-23 114.0 163 34.4
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 1.9e-20 104.0 68 70.6
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-18 97.8 76 55.3
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-18 97.8 76 55.3
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 1.4e-15 87.8 187 33.7
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 1.7e-13 80.9 76 55.3
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.2e-13 80.5 75 56.0
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.4e-12 77.8 67 59.7
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 3.5e-11 73.2 73 52.1
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.3e-10 71.2 74 51.4
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 3.0e-10 70.1 64 56.2
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 5.9e-06 55.8 56 53.6
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 7.7e-06 55.5 81 40.7


User provided reference genes

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