Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.2e-139 497.7 244 100.0
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 8.3e-137 490.3 244 98.4
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.7e-135 485.3 244 98.0
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.0e-134 481.9 244 97.5
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 4.1e-128 461.5 240 92.9
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 4.9e-121 438.0 230 90.0
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 5.4e-120 434.5 226 91.2
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.6e-119 433.0 226 89.8
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 7.3e-117 424.1 226 88.1
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.1e-115 420.2 223 88.3
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.8e-115 419.5 224 86.6
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 5.2e-115 417.9 224 86.2
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 6.9e-115 417.5 226 85.0
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 9.0e-115 417.2 225 86.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 1.5e-114 416.4 226 87.2
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 2.6e-114 415.6 226 86.3
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 5.8e-114 414.5 224 84.8
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.3e-113 413.3 224 86.6
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 3.8e-113 411.8 229 83.0
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 4.9e-113 411.4 221 87.3
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 6.4e-113 411.0 221 87.8
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 8.4e-113 410.6 225 83.6
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 8.4e-113 410.6 224 85.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.1e-112 410.2 222 85.6
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 1.1e-112 410.2 224 85.7
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.9e-112 409.5 225 84.9
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 2.4e-112 409.1 225 84.9
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 3.2e-112 408.7 224 83.5
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 4.2e-112 408.3 225 84.4
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 7.1e-112 407.5 224 85.3
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 9.3e-112 407.1 226 84.5
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.2e-111 406.8 226 84.1
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.2e-111 406.8 224 84.4
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 1.6e-111 406.4 224 85.3
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.6e-111 406.4 225 84.4
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.1e-111 406.0 225 84.0
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 2.1e-111 406.0 225 83.1
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 2.7e-111 405.6 225 84.4
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 2.7e-111 405.6 223 85.2
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 2.7e-111 405.6 224 83.0
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 3.5e-111 405.2 224 84.4
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 4.6e-111 404.8 223 83.4
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 6.0e-111 404.4 224 83.9
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.0e-110 403.7 226 83.2
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.3e-110 403.3 225 84.0
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 1.7e-110 402.9 224 84.8
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.7e-110 402.9 225 83.6
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 2.3e-110 402.5 224 84.4
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.0e-110 402.1 224 84.4
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 3.9e-110 401.7 225 82.2
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 3.9e-110 401.7 221 84.6
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 3.9e-110 401.7 224 83.9
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 5.1e-110 401.4 241 80.1
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 5.1e-110 401.4 225 83.6
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 6.6e-110 401.0 225 83.1
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 6.6e-110 401.0 221 84.2
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 8.7e-110 400.6 221 82.8
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 8.7e-110 400.6 224 83.0
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.1e-109 400.2 224 81.7
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.9e-109 399.4 224 83.5
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 1.9e-109 399.4 225 82.7
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.5e-109 399.1 221 82.4
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 4.3e-109 398.3 225 81.8
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.3e-109 398.3 225 82.7
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 4.3e-109 398.3 221 83.3
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 5.6e-109 397.9 221 83.3
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.3e-108 396.7 224 81.2
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.3e-108 396.7 224 82.6
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.6e-108 396.4 223 82.1
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.6e-108 396.4 224 81.7
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 2.8e-108 395.6 222 82.0
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 2.8e-108 395.6 225 82.2
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 3.6e-108 395.2 226 81.4
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 1.1e-107 393.7 218 83.5
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.4e-107 393.3 224 80.8
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.8e-107 392.9 237 79.7
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 3.1e-107 392.1 220 82.7
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 3.1e-107 392.1 222 83.8
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 4.0e-107 391.7 225 79.1
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.3e-107 391.3 223 82.1
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 5.3e-107 391.3 223 80.7
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 9.0e-107 390.6 211 85.3
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.5e-106 389.8 219 82.6
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.5e-106 389.8 220 82.7
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.5e-106 389.8 228 80.7
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.0e-106 389.4 247 76.1
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 2.0e-106 389.4 222 80.6
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.6e-106 389.0 219 82.2
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.6e-106 389.0 219 82.2
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.6e-106 389.0 219 82.2
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 3.4e-106 388.7 225 80.4
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 3.4e-106 388.7 225 80.4
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 3.4e-106 388.7 237 78.1
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 4.5e-106 388.3 211 84.8
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.5e-106 388.3 224 79.9
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 5.8e-106 387.9 225 81.3
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.3e-105 386.7 220 80.9
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.7e-105 386.3 220 81.4
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 2.2e-105 386.0 220 81.4
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 3.8e-105 385.2 224 81.2
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 6.4e-105 384.4 225 79.6
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.4e-104 383.3 221 81.0
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 3.2e-104 382.1 225 79.6
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 3.2e-104 382.1 225 80.9
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 7.1e-104 380.9 222 79.3
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 9.3e-104 380.6 220 80.5
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 9.3e-104 380.6 220 80.5
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.6e-103 379.8 220 80.0
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 6.0e-103 377.9 225 78.7
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 6.0e-103 377.9 251 72.9
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.9e-102 375.2 279 66.3
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 5.1e-102 374.8 224 78.6
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.1e-101 373.6 218 78.9
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 7.4e-101 370.9 218 78.4
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 4.8e-100 368.2 216 78.7
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 3.4e-98 362.1 216 77.3
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.2e-95 353.6 204 80.9
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.2e-95 353.6 221 72.9
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.7e-94 347.8 230 73.5
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 2.6e-90 335.9 229 68.1
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 8.4e-89 330.9 223 68.6
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 4.6e-87 325.1 218 67.9
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.8e-84 315.8 223 65.9
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.2e-82 310.5 164 92.1
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 7.9e-79 297.7 163 87.1
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.4e-75 287.0 181 72.4
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.5e-73 278.1 153 81.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.3e-70 269.6 160 75.0
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 9.7e-69 264.2 219 56.6
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.5e-66 256.9 131 86.3
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.7e-62 241.5 163 69.9
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-57 227.3 130 77.7
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 1.7e-57 226.9 209 54.1
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 2.9e-57 226.1 225 49.8
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 3.6e-55 219.2 218 47.7
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.1e-51 207.6 148 73.0
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.4e-51 207.2 111 88.3
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.0e-50 203.4 115 77.4
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 2.2e-49 199.9 114 76.3
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 4.1e-43 179.1 130 61.5
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 5.2e-38 162.2 93 78.5
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 3.7e-36 156.0 102 71.6
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 3.8e-33 146.0 220 35.9
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.1e-31 140.2 75 92.0
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 2.3e-30 136.7 97 73.2
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 6.8e-30 135.2 134 53.7
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.9e-27 127.1 66 86.4
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.6e-26 124.0 61 91.8
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.0e-26 123.6 78 80.8
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 8.6e-25 118.2 108 54.6
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 5.2e-22 109.0 61 90.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.4e-21 106.3 61 86.9
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 6.4e-20 102.1 54 83.3
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.4e-19 100.1 57 70.2
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 5.4e-19 99.0 63 79.4
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 7.0e-19 98.6 64 76.6
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.0e-18 95.5 128 49.2
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.1e-16 91.3 64 67.2
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 1.4e-14 84.3 100 46.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.8e-14 84.0 54 81.5
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.7e-10 70.1 50 68.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 5.1e-09 65.9 39 71.8
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 2.4e-06 57.0 43 69.8
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 4.0e-06 56.2 35 74.3


User provided reference genes

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