Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2830 Fragaria x ananassa HOM05D001641 ORTHO05D015676 8.8e-131 470.3 242 100.0
FvH4_4g32271 Fragaria vesca HOM05D006186 ORTHO05D009138 1.4e-48 197.2 168 66.7
FAN18G2532 Fragaria x ananassa HOM05D001641 ORTHO05D015676 7.2e-40 168.3 84 100.0
FAN26G2928 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.6e-39 167.2 84 98.8
FAN11G3680 Fragaria x ananassa HOM05D001641 ORTHO05D015676 2.1e-39 166.8 84 98.8
FAN26G0827 Fragaria x ananassa HOM05D001641 ORTHO05D015676 2.1e-39 166.8 84 98.8
FAN05G4340 Fragaria x ananassa HOM05D001641 ORTHO05D015676 3.6e-39 166.0 84 98.8
FAN14G0359 Fragaria x ananassa HOM05D001641 ORTHO05D015676 3.6e-39 166.0 84 98.8
FAN18G4158 Fragaria x ananassa HOM05D001641 ORTHO05D015676 3.6e-39 166.0 84 97.6
FAN02G2021 Fragaria x ananassa HOM05D001641 ORTHO05D015676 4.7e-39 165.6 84 97.6
FAN05G2622 Fragaria x ananassa HOM05D001641 ORTHO05D015676 7.9e-39 164.9 84 97.6
FAN04G0496 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.4e-38 164.1 84 97.6
FAN11G2159 Fragaria x ananassa HOM05D001641 ORTHO05D015676 3.0e-38 162.9 84 96.4
FAN20G2072 Fragaria x ananassa HOM05D001448 ORTHO05D007650 4.8e-36 155.6 134 64.9
FAN12G1906 Fragaria x ananassa HOM05D006186 ORTHO05D009138 4.8e-28 129.0 149 53.0
FvH4_6g12000 Fragaria vesca HOM05D001641 ORTHO05D001667 8.0e-23 111.7 120 55.8
FAN05G0357 Fragaria x ananassa HOM05D001641 ORTHO05D001667 8.0e-23 111.7 120 55.8
FAN14G4770 Fragaria x ananassa HOM05D001641 ORTHO05D001667 8.0e-23 111.7 120 55.8
FAN02G3953 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.3e-22 110.2 120 55.0
FAN09G4135 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.3e-22 110.2 120 55.0
FAN14G1423 Fragaria x ananassa HOM05D001641 ORTHO05D001667 1.2e-21 107.8 120 54.2
RcHm_v2.0_Chr3g0463831 Rosa chinensis HOM05D001641 ORTHO05D001667 2.3e-14 83.6 48 85.4
Potri.016G111400 Populus trichocarpa HOM05D001641 ORTHO05D001667 3.7e-12 76.3 49 77.6
Sabra16G0107700 Salix brachista HOM05D001641 ORTHO05D001667 3.7e-12 76.3 49 77.6
Thecc.05G021900 Theobroma cacao HOM05D001641 ORTHO05D001667 8.3e-12 75.1 49 75.5
CAN.G355.13 Capsicum annuum HOM05D001641 ORTHO05D001667 1.1e-11 74.7 51 72.5
Sabra06G0074200 Salix brachista HOM05D001641 ORTHO05D001667 1.4e-11 74.3 52 76.9
Duzib093G1558 Durio zibethinus HOM05D001641 ORTHO05D001667 1.8e-11 73.9 99 48.5
FvH4_4g28370 Fragaria vesca HOM05D006186 ORTHO05D009138 1.8e-11 73.9 146 37.7
PGSC0003DMG400020347 Solanum tuberosum HOM05D001641 ORTHO05D001667 1.8e-11 73.9 51 72.5
Potri.006G096600 Populus trichocarpa HOM05D001641 ORTHO05D001667 3.1e-11 73.2 52 75.0
ClCG10G021840 Citrullus lanatus HOM05D001641 ORTHO05D001667 4.1e-11 72.8 49 73.5
FAN12G0089 Fragaria x ananassa HOM05D011168 ORTHO05D012372 4.1e-11 72.8 146 36.3
Ciclev10011239m.g Citrus clementina HOM05D001641 ORTHO05D001667 7.0e-11 72.0 49 71.4
COL.COLO4_14595 Corchorus olitorius HOM05D001641 ORTHO05D001667 9.2e-11 71.6 97 49.5
Solyc09g014160.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 9.2e-11 71.6 51 68.6
Sopen09g007030 Solanum pennellii HOM05D001641 ORTHO05D001667 9.2e-11 71.6 51 68.6
Peaxi162Scf00141g00081 Petunia axillaris HOM05D001641 ORTHO05D001667 1.2e-10 71.2 51 74.5
Manes.08G087800 Manihot esculenta HOM05D001641 ORTHO05D001667 1.6e-10 70.9 48 72.9
Manes.09G102200 Manihot esculenta HOM05D001641 ORTHO05D001667 1.6e-10 70.9 98 43.9
Atru.chr8.2199 Acer truncatum HOM05D001641 ORTHO05D001667 2.0e-10 70.5 49 69.4
Duzib106G0289 Durio zibethinus HOM05D001641 ORTHO05D001667 2.0e-10 70.5 99 46.5
Cpa.g.sc163.1 Carica papaya HOM05D001641 ORTHO05D001667 2.7e-10 70.1 50 68.0
Gorai.007G378100 Gossypium raimondii HOM05D001641 ORTHO05D001667 2.7e-10 70.1 99 45.5
Nitab4.5_0001837g0010 Nicotiana tabacum HOM05D001641 ORTHO05D001667 3.5e-10 69.7 50 76.0
Prupe.6G270900 Prunus persica HOM05D001641 ORTHO05D001667 3.5e-10 69.7 83 49.4
AUR62025773 Chenopodium quinoa HOM05D001641 ORTHO05D001667 4.5e-10 69.3 52 67.3
AUR62041358 Chenopodium quinoa HOM05D001641 ORTHO05D001667 4.5e-10 69.3 52 67.3
Oeu004615.1 Olea europaea HOM05D001641 ORTHO05D001667 5.9e-10 68.9 49 67.3
MSTRG.10231 Avicennia marina HOM05D001641 ORTHO05D001667 7.7e-10 68.6 49 71.4
Nitab4.5_0000008g0730 Nicotiana tabacum HOM05D001641 ORTHO05D001667 7.7e-10 68.6 50 74.0
Solyc10g085070.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 7.7e-10 68.6 82 52.4
Sopen10g034530 Solanum pennellii HOM05D001641 ORTHO05D001667 7.7e-10 68.6 82 52.4
PGSC0003DMG400011018 Solanum tuberosum HOM05D001641 ORTHO05D001667 7.7e-10 68.6 82 52.4
CANSAT35G1325 Cannabis sativa HOM05D001641 ORTHO05D001667 1.0e-09 68.2 47 70.2
PGR031G0169 Punica granatum HOM05D001641 ORTHO05D001667 1.0e-09 68.2 49 75.5
SHI12785 Sapria himalayana HOM05D001641 ORTHO05D001667 1.0e-09 68.2 47 70.2
CSS0004795 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 1.3e-09 67.8 47 72.3
CSS0016472 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 1.3e-09 67.8 47 72.3
Dinv35512 Davidia involucrata HOM05D001641 ORTHO05D001667 1.3e-09 67.8 94 46.8
FAN17G1634 Fragaria x ananassa HOM05D011168 ORTHO05D012372 1.7e-09 67.4 146 35.6
MD04G1147100 Malus domestica HOM05D001641 ORTHO05D001667 1.7e-09 67.4 47 76.6
TWI77G0066 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 1.7e-09 67.4 51 66.7
Cfa017255 Carpinus fangiana HOM05D001641 ORTHO05D001667 2.3e-09 67.0 48 75.0
Haze_20951 Corylus avellana HOM05D001641 ORTHO05D001667 2.3e-09 67.0 48 75.0
Haze_20953 Corylus avellana HOM05D001641 ORTHO05D001667 2.3e-09 67.0 48 75.0
Gohir.A11G328700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 2.3e-09 67.0 100 45.0
Oeu044361.1 Olea europaea HOM05D001641 ORTHO05D001667 2.3e-09 67.0 49 65.3
Peaxi162Scf00009g00195 Petunia axillaris HOM05D001641 ORTHO05D001667 2.3e-09 67.0 51 68.6
Dinv37084 Davidia involucrata HOM05D001641 ORTHO05D001667 2.9e-09 66.6 48 68.8
Duzib128G0887 Durio zibethinus HOM05D001641 ORTHO05D001667 2.9e-09 66.6 99 48.5
MD12G1160400 Malus domestica HOM05D001641 ORTHO05D001667 2.9e-09 66.6 48 75.0
GSVIVG01034008001 Vitis vinifera HOM05D001641 ORTHO05D001667 2.9e-09 66.6 86 45.3
MSTRG.26798 Avicennia marina HOM05D001641 ORTHO05D001667 3.8e-09 66.2 49 67.3
Cc06_g01660 Coffea canephora HOM05D001641 ORTHO05D001667 3.8e-09 66.2 92 44.6
FAN14G2977 Fragaria x ananassa HOM05D006186 ORTHO05D012372 5.0e-09 65.9 151 38.4
CiPaw.09G206200 Carya illinoinensis HOM05D001641 ORTHO05D001667 8.6e-09 65.1 50 68.0
FAN09G0644 Fragaria x ananassa HOM05D006186 ORTHO05D009138 8.6e-09 65.1 151 38.4
Hma1.2p1_0244F.1_g101220 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 8.6e-09 65.1 101 44.6
Lalb_Chr01g0022911 Lupinus albus HOM05D001641 ORTHO05D001667 8.6e-09 65.1 52 65.4
TWI74G0768 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 8.6e-09 65.1 50 68.0
TAR623G0053 Trochodendron aralioides HOM05D001641 ORTHO05D001667 1.1e-08 64.7 51 64.7
MD10G1278600 Malus domestica HOM05D006186 ORTHO05D009138 1.5e-08 64.3 151 33.1
Aa31LG3G1600 Aethionema arabicum HOM05D001641 ORTHO05D001667 1.9e-08 63.9 48 68.8
Nitab4.5_0000652g0140 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.9e-08 63.9 85 49.4
Nitab4.5_0004912g0080 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.9e-08 63.9 50 68.0
Sc01g0006830 Simmondsia chinensis HOM05D001641 ORTHO05D001667 1.9e-08 63.9 52 59.6
Thhalv10020222m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 2.5e-08 63.5 47 63.8
FAN02G3420 Fragaria x ananassa HOM05D006186 ORTHO05D009138 2.5e-08 63.5 151 37.7
MSTRG.5598 Avicennia marina HOM05D001641 ORTHO05D001667 3.3e-08 63.2 43 74.4
ECA236G1576 Erigeron canadensis HOM05D001641 ORTHO05D001667 3.3e-08 63.2 47 63.8
Rhsim05G0206300 Rhododendron simsii HOM05D001641 ORTHO05D001667 3.3e-08 63.2 52 65.4
Hma1.2p1_0763F.1_g214660 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 5.6e-08 62.4 51 64.7
Sp3g07520 Schrenkiella parvula HOM05D001641 ORTHO05D001667 5.6e-08 62.4 48 68.8
arahy.Tifrunner.gnm1.ann1.JIF81Q Arachis hypogaea HOM05D001641 ORTHO05D001667 7.3e-08 62.0 53 64.2
arahy.Tifrunner.gnm1.ann1.UC3VQR Arachis hypogaea HOM05D001641 ORTHO05D001667 7.3e-08 62.0 53 64.2
CAN.G1297.3 Capsicum annuum HOM05D001641 ORTHO05D001667 7.3e-08 62.0 101 44.6
HanXRQChr08g0220551 Helianthus annuus HOM05D001641 ORTHO05D001667 7.3e-08 62.0 44 65.9
Lj1g0001530 Lotus japonicus HOM05D001641 ORTHO05D001667 7.3e-08 62.0 46 67.4
AL3G20130 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 9.5e-08 61.6 49 59.2
CARHR083430 Cardamine hirsuta HOM05D001641 ORTHO05D001667 1.2e-07 61.2 47 68.1
Sed0022239 Sechium edule HOM05D001641 ORTHO05D001667 1.2e-07 61.2 49 67.3
Sc07g0006840 Simmondsia chinensis HOM05D001641 ORTHO05D001667 1.2e-07 61.2 52 59.6
THA.LOC104827040 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 1.2e-07 61.2 46 69.6
Actinidia29129 Actinidia chinensis HOM05D001641 ORTHO05D001667 1.6e-07 60.8 48 66.7
Nn2g13606 Nelumbo nucifera HOM05D001641 ORTHO05D001667 1.6e-07 60.8 49 67.3
ECA247G1117 Erigeron canadensis HOM05D001641 ORTHO05D001667 2.1e-07 60.5 58 53.4
TWI53G0423 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 2.1e-07 60.5 49 59.2
Gohir.A04G088300 Gossypium hirsutum HOM05D001641 ORTHO05D001667 2.8e-07 60.1 100 46.0
Migut.J00224 Erythranthe guttata HOM05D001641 ORTHO05D001667 3.6e-07 59.7 44 65.9
RcHm_v2.0_Chr2g0161931 Rosa chinensis HOM05D006186 ORTHO05D009138 3.6e-07 59.7 163 34.4
arahy.Tifrunner.gnm1.ann1.4BEG1R Arachis hypogaea HOM05D001641 ORTHO05D001667 4.7e-07 59.3 104 36.5
BcaC09g48051 Brassica carinata HOM05D001641 ORTHO05D001667 4.7e-07 59.3 41 70.7
BolC1t05476H Brassica oleracea HOM05D001641 ORTHO05D001667 4.7e-07 59.3 41 70.7
Gohir.A01G225200 Gossypium hirsutum HOM05D001641 ORTHO05D001667 4.7e-07 59.3 93 46.2
Gohir.D01G214800 Gossypium hirsutum HOM05D001641 ORTHO05D001667 4.7e-07 59.3 93 46.2
Gorai.002G261000 Gossypium raimondii HOM05D001641 ORTHO05D001667 4.7e-07 59.3 93 46.2
Phvul.008G107800 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 4.7e-07 59.3 88 43.2
A03p36150 Brassica napus HOM05D001641 ORTHO05D001667 6.1e-07 58.9 43 74.4
DCAR_015457 Daucus carota HOM05D001641 ORTHO05D001667 6.1e-07 58.9 52 57.7
Gohir.D04G128700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 6.1e-07 58.9 100 45.0
Lsat_1_v5_gn_8_99861 Lactuca sativa HOM05D001641 ORTHO05D001667 6.1e-07 58.9 59 55.9
Sed0014233 Sechium edule HOM05D001641 ORTHO05D001667 8.0e-07 58.5 51 58.8
Gohir.D11G347700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.0e-06 58.2 77 48.1
Prupe.8G124800 Prunus persica HOM05D006186 ORTHO05D009138 1.0e-06 58.2 167 34.1
SGA_v2.0_scaffold75G24999 Striga asiatica HOM05D001641 ORTHO05D001667 1.0e-06 58.2 39 74.4
BraA01t04318Z Brassica rapa HOM05D001641 ORTHO05D001667 1.4e-06 57.8 44 68.2
Migut.L01994 Erythranthe guttata HOM05D001641 ORTHO05D001667 1.4e-06 57.8 46 65.2
Thhalv10017664m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 1.4e-06 57.8 42 66.7
Lj3A956T51 Lonicera japonica HOM05D001641 ORTHO05D001667 1.4e-06 57.8 47 63.8
HanXRQChr15g0464001 Helianthus annuus HOM05D001641 ORTHO05D001667 1.8e-06 57.4 44 61.4
Oeu028729.2 Olea europaea HOM05D001641 ORTHO05D001667 1.8e-06 57.4 51 54.9
Lsat_1_v5_gn_9_36081 Lactuca sativa HOM05D001641 ORTHO05D001667 2.3e-06 57.0 38 73.7
Gorai.012G111800 Gossypium raimondii HOM05D001641 ORTHO05D001667 3.0e-06 56.6 100 44.0
HanXRQChr10g0286991 Helianthus annuus HOM05D001641 ORTHO05D001667 4.0e-06 56.2 47 55.3
MBI14_g32946_MAGBIO Magnolia biondii HOM05D001641 ORTHO05D001667 4.0e-06 56.2 101 41.6
Psat3g130960 Pisum sativum HOM05D001641 ORTHO05D001667 4.0e-06 56.2 51 58.8
THA.LOC104824521 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 4.0e-06 56.2 46 65.2
Actinidia13778 Actinidia chinensis HOM05D001641 ORTHO05D001667 5.2e-06 55.8 48 64.6
Ca_09169_v3 Cicer arietinum L. HOM05D001641 ORTHO05D001667 5.2e-06 55.8 51 58.8
VMungo0331G1007 Vigna mungo HOM05D001641 ORTHO05D001667 5.2e-06 55.8 45 57.8


User provided reference genes

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