Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2821 Fragaria x ananassa HOM05D016268 ORTHO05D000038 6.3e-154 547.4 267 100.0
FAN17G2426 Fragaria x ananassa HOM05D016268 ORTHO05D000038 6.5e-143 510.8 251 100.0
RcHm_v2.0_Chr4g0388871 Rosa chinensis HOM05D016268 ORTHO05D019548 1.9e-81 306.6 304 59.2
FvH4_4g01540 Fragaria vesca HOM05D000082 ORTHO05D019548 3.3e-78 295.8 301 55.5
FAN12G0269 Fragaria x ananassa HOM05D000082 ORTHO05D019548 5.6e-78 295.0 301 55.5
FAN12G0522 Fragaria x ananassa HOM05D000082 ORTHO05D019548 2.8e-77 292.7 297 55.2
FvH4_4g02720 Fragaria vesca HOM05D016268 ORTHO05D000038 4.5e-67 258.8 198 69.7
FvH4_4g00060 Fragaria vesca HOM05D000082 ORTHO05D019548 2.6e-59 233.0 198 63.6
FAN22G1490 Fragaria x ananassa HOM05D000082 ORTHO05D019548 4.5e-43 179.1 286 42.3
FAN17G1391 Fragaria x ananassa HOM05D016268 ORTHO05D000038 4.2e-41 172.6 142 62.0
RcHm_v2.0_Chr4g0388511 Rosa chinensis HOM05D000082 ORTHO05D000038 1.2e-35 154.5 134 61.9
FAN22G0749 Fragaria x ananassa HOM05D016268 ORTHO05D000038 6.1e-32 142.1 185 51.4
FAN12G3526 Fragaria x ananassa HOM05D016268 ORTHO05D000038 1.3e-29 134.4 121 66.9
FAN17G1170 Fragaria x ananassa HOM05D000082 ORTHO05D000038 2.7e-24 116.7 148 48.6
Prupe.8G048800 Prunus persica HOM05D000082 ORTHO05D000038 1.1e-09 68.2 57 47.4
FAN05G2362 Fragaria x ananassa HOM05D000082 ORTHO05D000038 2.5e-09 67.0 277 25.6
THA.LOC104813318 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 5.5e-09 65.9 40 62.5
RcHm_v2.0_Chr4g0407861 Rosa chinensis HOM05D000082 ORTHO05D000038 2.7e-08 63.5 56 44.6
Peaxi162Scf00431g00512 Petunia axillaris HOM05D000082 ORTHO05D000038 8.0e-08 62.0 296 23.3
Potri.005G062400 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.0e-07 61.6 188 29.8
MBI11_g09869_MAGBIO Magnolia biondii HOM05D011607 ORTHO05D000038 1.4e-07 61.2 36 55.6
Prupe.1G270300 Prunus persica HOM05D000082 ORTHO05D000038 1.4e-07 61.2 37 59.5
CDE11G1015 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 3.0e-07 60.1 39 53.8
RcHm_v2.0_Chr7g0215451 Rosa chinensis HOM05D000082 ORTHO05D000038 3.0e-07 60.1 43 67.4
COL.COLO4_22964 Corchorus olitorius HOM05D000082 ORTHO05D000038 5.2e-07 59.3 44 43.2
MBI11_g29573_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 5.2e-07 59.3 39 48.7
MBI11_g09452_MAGBIO Magnolia biondii HOM05D011607 ORTHO05D000038 6.8e-07 58.9 36 55.6
MD02G1241100 Malus domestica HOM05D000082 ORTHO05D000038 6.8e-07 58.9 49 44.9
MD06G1190000 Malus domestica HOM05D000082 ORTHO05D000038 8.8e-07 58.5 51 41.2
RcHm_v2.0_Chr6g0259471 Rosa chinensis HOM05D000082 ORTHO05D029622 8.8e-07 58.5 34 58.8
Cfa008015 Carpinus fangiana HOM05D000082 ORTHO05D008689 1.5e-06 57.8 36 52.8
CiPaw.12G018100 Carya illinoinensis HOM05D000082 ORTHO05D000038 1.5e-06 57.8 53 43.4
Potri.007G107000 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.5e-06 57.8 53 43.4
Prupe.6G084800 Prunus persica HOM05D000082 ORTHO05D000038 1.5e-06 57.8 50 50.0
Aa31LG3G1270 Aethionema arabicum HOM05D000082 ORTHO05D000038 2.0e-06 57.4 73 38.4
ATR0618G179 Amborella trichopoda HOM05D000082 ORTHO05D000038 2.0e-06 57.4 41 58.5
BcaB06g29183 Brassica carinata HOM05D000082 ORTHO05D000038 2.0e-06 57.4 69 37.7
FAN14G5357 Fragaria x ananassa HOM05D012765 ORTHO05D020703 2.0e-06 57.4 304 22.4
MD13G1076400 Malus domestica HOM05D000082 ORTHO05D000038 2.0e-06 57.4 36 52.8
Nn4g24349 Nelumbo nucifera HOM05D000082 ORTHO05D000038 2.0e-06 57.4 54 42.6
Psat6g011400 Pisum sativum HOM05D000082 ORTHO05D000038 2.0e-06 57.4 44 47.7
RcHm_v2.0_Chr7g0205221 Rosa chinensis HOM05D001778 ORTHO05D000038 2.0e-06 57.4 49 51.0
THA.LOC104814453 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 2.0e-06 57.4 42 50.0
THA.LOC104824376 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 2.0e-06 57.4 42 50.0
ATR0782G176 Amborella trichopoda HOM05D000082 ORTHO05D000038 2.6e-06 57.0 42 50.0
BcaC01g05373 Brassica carinata HOM05D000082 ORTHO05D000038 2.6e-06 57.0 39 51.3
A03p22970 Brassica napus HOM05D000082 ORTHO05D000038 2.6e-06 57.0 39 51.3
C03p27250 Brassica napus HOM05D000082 ORTHO05D000038 2.6e-06 57.0 39 51.3
BolC3t15107H Brassica oleracea HOM05D000082 ORTHO05D000038 2.6e-06 57.0 39 51.3
BraA03t11520Z Brassica rapa HOM05D000082 ORTHO05D000038 2.6e-06 57.0 39 51.3
Haze_23543 Corylus avellana HOM05D000082 ORTHO05D000038 2.6e-06 57.0 42 50.0
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 2.6e-06 57.0 56 42.9
MBI18_g39300_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 2.6e-06 57.0 37 48.6
Phvul.008G204700 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 2.6e-06 57.0 42 50.0
Thhalv10021230m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 3.4e-06 56.6 51 47.1
FvH4_5g14420 Fragaria vesca HOM05D000082 ORTHO05D000038 3.4e-06 56.6 56 41.1
FAN18G0515 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.4e-06 56.6 56 41.1
Potri.007G118000 Populus trichocarpa HOM05D000082 ORTHO05D000038 3.4e-06 56.6 53 41.5
RcHm_v2.0_Chr7g0182241 Rosa chinensis HOM05D000082 ORTHO05D000038 3.4e-06 56.6 56 39.3
Ah.04g159500 Amaranthus hybridus HOM05D000082 ORTHO05D000038 4.4e-06 56.2 42 47.6
BcaB01g03511 Brassica carinata HOM05D000082 ORTHO05D000038 4.4e-06 56.2 39 51.3
Thhalv10016932m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 4.4e-06 56.2 39 51.3
Peaxi162Scf00013g01223 Petunia axillaris HOM05D000082 ORTHO05D000038 4.4e-06 56.2 46 47.8
RcHm_v2.0_Chr3g0484371 Rosa chinensis HOM05D009507 ORTHO05D000038 4.4e-06 56.2 49 46.9
RcHm_v2.0_Chr3g0484461 Rosa chinensis HOM05D009507 ORTHO05D000038 4.4e-06 56.2 49 46.9
Sp4g23160 Schrenkiella parvula HOM05D000082 ORTHO05D000038 4.4e-06 56.2 39 51.3
THA.LOC104809211 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 4.4e-06 56.2 41 56.1
TPR.G38159 Trifolium pratense HOM05D000082 ORTHO05D000038 4.4e-06 56.2 44 47.7
VMungo0647G1760 Vigna mungo HOM05D000082 ORTHO05D000038 4.4e-06 56.2 42 50.0
Aqoxy1G00894 Aquilegia oxysepala HOM05D000082 ORTHO05D001639 5.7e-06 55.8 46 47.8
AL4G38780 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 5.7e-06 55.8 39 51.3
AT2G40830 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 5.7e-06 55.8 39 51.3
BcaC02g12737 Brassica carinata HOM05D000082 ORTHO05D000038 5.7e-06 55.8 39 48.7
A03p36790 Brassica napus HOM05D000082 ORTHO05D000038 5.7e-06 55.8 39 51.3
BraA03t12841Z Brassica rapa HOM05D000082 ORTHO05D000038 5.7e-06 55.8 39 51.3
Carub.0004s2315 Capsella rubella HOM05D000082 ORTHO05D000038 5.7e-06 55.8 39 51.3
CARHR135950 Cardamine hirsuta HOM05D000082 ORTHO05D000038 5.7e-06 55.8 39 51.3
Cfa002018 Carpinus fangiana HOM05D000082 ORTHO05D000038 5.7e-06 55.8 36 50.0
COL.COLO4_33523 Corchorus olitorius HOM05D000082 ORTHO05D000038 5.7e-06 55.8 39 51.3
CsaV3_6G034420 Cucumis sativus L. HOM05D000082 ORTHO05D000038 5.7e-06 55.8 55 38.2
FAN14G0215 Fragaria x ananassa HOM05D012765 ORTHO05D020703 5.7e-06 55.8 303 21.8
MD14G1195700 Malus domestica HOM05D000082 ORTHO05D000038 5.7e-06 55.8 37 54.1
Potri.002G083001 Populus trichocarpa HOM05D000082 ORTHO05D000038 5.7e-06 55.8 53 45.3
Prupe.5G189000 Prunus persica HOM05D000082 ORTHO05D000038 5.7e-06 55.8 51 39.2
QL10p015716 Quercus lobata HOM05D000082 ORTHO05D000038 5.7e-06 55.8 54 38.9
QL10p016159 Quercus lobata HOM05D000082 ORTHO05D000038 5.7e-06 55.8 49 49.0
QL93p0043_0007 Quercus lobata HOM05D000082 ORTHO05D000038 5.7e-06 55.8 49 49.0
Rhsim04G0118400 Rhododendron simsii HOM05D000082 ORTHO05D000038 5.7e-06 55.8 44 45.5
RcHm_v2.0_Chr4g0384981 Rosa chinensis HOM05D000082 ORTHO05D000038 5.7e-06 55.8 38 52.6
RcHm_v2.0_Chr7g0189311 Rosa chinensis HOM05D000082 ORTHO05D000038 5.7e-06 55.8 64 45.3
TAR623G0090 Trochodendron aralioides HOM05D000082 ORTHO05D000038 5.7e-06 55.8 43 48.8
Aqoxy3G03344 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 7.5e-06 55.5 55 41.8
AL3G47340 Arabidopsis lyrata HOM05D003638 ORTHO05D003202 7.5e-06 55.5 42 42.9
Cfa002019 Carpinus fangiana HOM05D002312 ORTHO05D000038 7.5e-06 55.5 36 50.0
Cfa010157 Carpinus fangiana HOM05D000082 ORTHO05D000038 7.5e-06 55.5 42 47.6
Cfa018969 Carpinus fangiana HOM05D000082 ORTHO05D000038 7.5e-06 55.5 52 46.2
Haze_07353 Corylus avellana HOM05D000082 ORTHO05D000038 7.5e-06 55.5 52 46.2
Dinv17897 Davidia involucrata HOM05D000082 ORTHO05D000038 7.5e-06 55.5 44 45.5
Dinv35889 Davidia involucrata HOM05D000082 ORTHO05D000038 7.5e-06 55.5 39 53.8
Duzib205G0981 Durio zibethinus HOM05D000082 ORTHO05D000038 7.5e-06 55.5 53 45.3
Lalb_Chr02g0156711 Lupinus albus HOM05D000082 ORTHO05D000038 7.5e-06 55.5 42 50.0
Lalb_Chr10g0106021 Lupinus albus HOM05D000082 ORTHO05D000038 7.5e-06 55.5 42 52.4
Manes.13G043751 Manihot esculenta HOM05D000082 ORTHO05D000038 7.5e-06 55.5 37 54.1
Nn2g14591 Nelumbo nucifera HOM05D000082 ORTHO05D000038 7.5e-06 55.5 44 47.7
Oeu003256.1 Olea europaea HOM05D000082 ORTHO05D000038 7.5e-06 55.5 54 38.9
Oeu045311.1 Olea europaea HOM05D000082 ORTHO05D000038 7.5e-06 55.5 54 40.7
Oeu060765.1 Olea europaea HOM05D000082 ORTHO05D000038 7.5e-06 55.5 40 50.0
PSO541G5182 Papaver somniferum HOM05D000082 ORTHO05D000038 7.5e-06 55.5 44 47.7
RcHm_v2.0_Chr2g0107491 Rosa chinensis HOM05D000082 ORTHO05D000038 7.5e-06 55.5 54 46.3
RcHm_v2.0_Chr6g0295911 Rosa chinensis HOM05D000082 ORTHO05D000038 7.5e-06 55.5 46 37.0
RcHm_v2.0_Chr7g0205181 Rosa chinensis HOM05D001778 ORTHO05D000038 7.5e-06 55.5 51 45.1
Aqoxy5G02309 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 9.8e-06 55.1 35 57.1
CDE04G0213 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 9.8e-06 55.1 39 51.3
CDE09G1148 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 9.8e-06 55.1 41 51.2
FvH4_1g03311 Fragaria vesca HOM05D000082 ORTHO05D035481 9.8e-06 55.1 34 52.9
FvH4_1g17310 Fragaria vesca HOM05D000082 ORTHO05D000038 9.8e-06 55.1 55 45.5
FvH4_6g15110 Fragaria vesca HOM05D000082 ORTHO05D000038 9.8e-06 55.1 55 47.3
FAN08G0245 Fragaria x ananassa HOM05D006854 ORTHO05D011215 9.8e-06 55.1 205 27.3
FAN09G4725 Fragaria x ananassa HOM05D000082 ORTHO05D000038 9.8e-06 55.1 55 47.3
FAN19G1787 Fragaria x ananassa HOM05D012452 ORTHO05D035481 9.8e-06 55.1 34 52.9
FAN19G2743 Fragaria x ananassa HOM05D000082 ORTHO05D000038 9.8e-06 55.1 55 45.5
FAN26G2128 Fragaria x ananassa HOM05D000082 ORTHO05D035481 9.8e-06 55.1 34 52.9
FAN26G2829 Fragaria x ananassa HOM05D000082 ORTHO05D000038 9.8e-06 55.1 55 45.5
FAN28G1733 Fragaria x ananassa HOM05D007212 ORTHO05D009094 9.8e-06 55.1 55 45.5
Glyma.02G161600 Glycine max HOM05D000082 ORTHO05D000038 9.8e-06 55.1 42 47.6
MBI11_g41065_MAGBIO Magnolia biondii HOM05D011607 ORTHO05D000038 9.8e-06 55.1 54 44.4
Manes.08G066100 Manihot esculenta HOM05D000082 ORTHO05D000038 9.8e-06 55.1 42 50.0
Medtr1g051105 Medicago truncatula HOM05D000082 ORTHO05D000038 9.8e-06 55.1 42 50.0
Potri.016G029300 Populus trichocarpa HOM05D000082 ORTHO05D000038 9.8e-06 55.1 44 45.5
Sed0022808 Sechium edule HOM05D000082 ORTHO05D000038 9.8e-06 55.1 40 47.5
GSVIVG01037379001 Vitis vinifera HOM05D000082 ORTHO05D000038 9.8e-06 55.1 42 50.0


User provided reference genes

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