Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2805 Fragaria x ananassa HOM05D006857 ORTHO05D008679 0.0e+00 1308.1 675 100.0
FvH4_4g04570 Fragaria vesca HOM05D006857 ORTHO05D008679 3.2e-239 832.0 418 96.4
RcHm_v2.0_Chr4g0395361 Rosa chinensis HOM05D006857 ORTHO05D008679 2.0e-217 759.6 418 88.0
Prupe.1G048100 Prunus persica HOM05D006857 ORTHO05D008679 4.3e-191 672.2 424 74.3
MD16G1226200 Malus domestica HOM05D006857 ORTHO05D008679 1.8e-189 666.8 418 75.1
MD07G1289900 Malus domestica HOM05D006857 ORTHO05D008679 1.3e-184 650.6 419 73.3
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 1.2e-172 610.9 407 69.0
CANSAT78G0655 Cannabis sativa HOM05D006857 ORTHO05D008679 1.3e-171 607.4 426 68.8
CiPaw.02G107000 Carya illinoinensis HOM05D006857 ORTHO05D008679 2.4e-170 603.2 424 66.5
QL06p021004 Quercus lobata HOM05D006857 ORTHO05D008679 8.7e-168 594.7 424 66.5
CSS0034732 Camellia sinensis var. sinensis HOM05D006857 ORTHO05D008679 3.3e-167 592.8 410 67.3
ClCG05G004000 Citrullus lanatus HOM05D006857 ORTHO05D008679 4.3e-167 592.4 644 49.8
TAR362G0064 Trochodendron aralioides HOM05D006857 ORTHO05D008679 9.6e-167 591.3 426 66.0
Cpa.g.sc44.1 Carica papaya HOM05D006857 ORTHO05D008679 6.2e-166 588.6 414 64.5
Glyma.10G132600 Glycine max HOM05D006857 ORTHO05D008679 1.8e-165 587.0 420 64.8
TWI09G0838 Tripterygium wilfordii HOM05D006857 ORTHO05D008679 2.9e-163 579.7 425 63.3
CsaV3_3G011690 Cucumis sativus L. HOM05D006857 ORTHO05D008679 7.1e-162 575.1 421 63.7
Actinidia35816 Actinidia chinensis HOM05D006857 ORTHO05D008679 9.3e-162 574.7 418 64.1
Haze_11458 Corylus avellana HOM05D006857 ORTHO05D008679 3.5e-161 572.8 394 68.3
Rhsim04G0172300 Rhododendron simsii HOM05D006857 ORTHO05D008679 5.1e-160 568.9 419 64.7
GSVIVG01027915001 Vitis vinifera HOM05D006857 ORTHO05D008679 1.9e-159 567.0 418 64.1
Nn1g02958 Nelumbo nucifera HOM05D006857 ORTHO05D008679 2.5e-159 566.6 428 62.6
Duzib151G0230 Durio zibethinus HOM05D006857 ORTHO05D008679 3.3e-159 566.2 430 61.4
Thecc.04G264000 Theobroma cacao HOM05D006857 ORTHO05D008679 4.3e-159 565.8 431 60.3
Lalb_Chr03g0036951 Lupinus albus HOM05D006857 ORTHO05D008679 5.6e-159 565.5 427 62.1
Manes.03G158900 Manihot esculenta HOM05D006857 ORTHO05D008679 2.4e-157 560.1 426 62.7
Medtr8g085480 Medicago truncatula HOM05D006857 ORTHO05D008679 9.0e-157 558.1 425 61.9
Psat7g076560 Pisum sativum HOM05D006857 ORTHO05D008679 1.5e-156 557.4 429 60.8
vmacro08554 Vaccinium macrocarpon HOM05D006857 ORTHO05D008679 1.3e-155 554.3 418 63.2
Sabra08G0131200 Salix brachista HOM05D006857 ORTHO05D008679 2.9e-155 553.1 430 62.8
Potri.008G171900 Populus trichocarpa HOM05D006857 ORTHO05D008679 3.8e-155 552.7 431 62.4
MELO3C006377.2 Cucumis melo HOM05D006857 ORTHO05D008679 1.1e-154 551.2 437 60.4
Ca_17963_v3 Cicer arietinum L. HOM05D006857 ORTHO05D008679 1.4e-154 550.8 426 61.3
arahy.Tifrunner.gnm1.ann1.I81STG Arachis hypogaea HOM05D006857 ORTHO05D008679 3.2e-154 549.7 427 61.6
arahy.Tifrunner.gnm1.ann1.SJBM1Y Arachis hypogaea HOM05D006857 ORTHO05D008679 5.5e-154 548.9 427 61.6
Ciclev10005032m.g Citrus clementina HOM05D006857 ORTHO05D008679 7.1e-154 548.5 419 64.0
PGR031G1141 Punica granatum HOM05D006857 ORTHO05D008679 7.1e-154 548.5 407 63.1
PGR031G1585 Punica granatum HOM05D006857 ORTHO05D008679 7.1e-154 548.5 407 63.1
Atru.chr4.1915 Acer truncatum HOM05D006857 ORTHO05D008679 1.2e-153 547.7 414 64.3
VMungo0720G0849 Vigna mungo HOM05D006857 ORTHO05D008679 1.2e-153 547.7 420 61.4
Gorai.011G177900 Gossypium raimondii HOM05D006857 ORTHO05D008679 3.5e-153 546.2 436 57.6
Aqoxy2G03746 Aquilegia oxysepala HOM05D006857 ORTHO05D008679 6.0e-153 545.4 423 61.5
Gohir.D10G158400 Gossypium hirsutum HOM05D006857 ORTHO05D008679 1.3e-152 544.3 436 57.3
Nitab4.5_0000194g0200 Nicotiana tabacum HOM05D006857 ORTHO05D008679 6.7e-152 542.0 413 62.2
Nitab4.5_0013063g0010 Nicotiana tabacum HOM05D006857 ORTHO05D008679 7.4e-151 538.5 413 62.5
Aqoxy7G02302 Aquilegia oxysepala HOM05D006857 ORTHO05D008679 9.6e-151 538.1 423 60.5
Sed0022275 Sechium edule HOM05D006857 ORTHO05D008679 9.6e-151 538.1 385 66.5
Aqoxy7G02465 Aquilegia oxysepala HOM05D006857 ORTHO05D008679 6.2e-150 535.4 423 60.5
Lj6g0000537 Lotus japonicus HOM05D006857 ORTHO05D008679 5.8e-148 528.9 426 57.7
COL.COLO4_15963 Corchorus olitorius HOM05D006857 ORTHO05D008679 8.4e-147 525.0 401 61.1
Cc03_g06310 Coffea canephora HOM05D006857 ORTHO05D008679 2.7e-145 520.0 410 61.0
CAN.G524.29 Capsicum annuum HOM05D006857 ORTHO05D008679 7.9e-145 518.5 407 59.7
Sc19g0005530 Simmondsia chinensis HOM05D006857 ORTHO05D008679 5.1e-144 515.8 443 57.6
Solyc09g090690.4 Solanum lycopersicum HOM05D006857 ORTHO05D008679 5.1e-144 515.8 408 60.0
Sopen09g033630 Solanum pennellii HOM05D006857 ORTHO05D008679 6.7e-144 515.4 408 60.0
PGSC0003DMG400017145 Solanum tuberosum HOM05D006857 ORTHO05D008679 6.7e-144 515.4 412 59.5
AUR62015271 Chenopodium quinoa HOM05D006857 ORTHO05D008679 8.7e-144 515.0 428 57.7
Eucgr.H00127 Eucalyptus grandis HOM05D006857 ORTHO05D008679 1.5e-143 514.2 384 62.8
Hund20529 Selenicereus undatus HOM05D006857 ORTHO05D008679 1.6e-142 510.8 417 59.2
Lsat_1_v5_gn_2_41360 Lactuca sativa HOM05D006857 ORTHO05D008679 2.1e-142 510.4 412 60.9
Lj6C621T18 Lonicera japonica HOM05D006857 ORTHO05D008679 1.8e-141 507.3 514 51.4
HanXRQChr06g0182801 Helianthus annuus HOM05D006857 ORTHO05D008679 2.4e-141 506.9 421 59.9
Peaxi162Scf00153g01846 Petunia axillaris HOM05D006857 ORTHO05D008679 1.2e-140 504.6 408 61.0
EL10Ac3g06657 Beta vulgaris HOM05D006857 ORTHO05D008679 5.9e-140 502.3 427 57.4
AUR62018068 Chenopodium quinoa HOM05D006857 ORTHO05D008679 5.5e-138 495.7 412 57.5
PSO017G4333 Papaver somniferum HOM05D006857 ORTHO05D008679 2.1e-137 493.8 423 57.2
PSO063G2784 Papaver somniferum HOM05D006857 ORTHO05D008679 4.6e-137 492.7 407 58.7
Aa31LG9G4440 Aethionema arabicum HOM05D006857 ORTHO05D008679 2.3e-136 490.3 406 58.4
Ah.04g153670 Amaranthus hybridus HOM05D006857 ORTHO05D008679 1.9e-135 487.3 427 56.4
Sp7g10880 Schrenkiella parvula HOM05D006857 ORTHO05D008679 4.8e-134 482.6 403 59.1
Migut.G00555 Erythranthe guttata HOM05D006857 ORTHO05D008679 5.3e-133 479.2 411 57.7
Hma1.2p1_0112F.1_g054740 Hydrangea macrophylla HOM05D006857 ORTHO05D008679 2.0e-132 477.2 349 63.3
CARHR218870 Cardamine hirsuta HOM05D006857 ORTHO05D008679 3.4e-132 476.5 399 58.6
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 2.2e-131 473.8 352 63.1
C06p17330 Brassica napus HOM05D006857 ORTHO05D008679 1.1e-130 471.5 400 58.5
BolC6t36929H Brassica oleracea HOM05D006857 ORTHO05D008679 1.1e-130 471.5 400 58.5
Carub.0007s2931 Capsella rubella HOM05D006857 ORTHO05D008679 1.1e-130 471.5 415 55.9
THA.LOC104804575 Tarenaya hassleriana HOM05D006857 ORTHO05D008679 2.5e-130 470.3 405 55.6
Phvul.007G231500 Phaseolus vulgaris HOM05D006857 ORTHO05D008679 3.2e-130 469.9 347 62.2
ATR0787G032 Amborella trichopoda HOM05D006857 ORTHO05D008679 1.6e-129 467.6 440 53.9
A05p16520 Brassica napus HOM05D006857 ORTHO05D008679 1.6e-129 467.6 399 58.1
BraA05t20557Z Brassica rapa HOM05D006857 ORTHO05D008679 1.6e-129 467.6 406 57.9
AL9U10380 Arabidopsis lyrata HOM05D006857 ORTHO05D008679 2.7e-129 466.8 418 56.0
ECA234G1558 Erigeron canadensis HOM05D006857 ORTHO05D005985 6.1e-129 465.7 384 59.6
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 1.0e-128 464.9 412 56.1
AT4G13330 Arabidopsis thaliana HOM05D006857 ORTHO05D008679 3.9e-128 463.0 416 55.5
SGA_v2.0_scaffold67G22686 Striga asiatica HOM05D006857 ORTHO05D008679 8.8e-128 461.8 421 53.2
Thhalv10026810m.g Eutrema salsugineum HOM05D006857 ORTHO05D008679 6.3e-126 455.7 400 56.2
Oeu002936.2 Olea europaea HOM05D006857 ORTHO05D008679 2.2e-123 447.2 638 40.6
MSTRG.4172 Avicennia marina HOM05D006857 ORTHO05D008679 1.4e-122 444.5 363 58.4
Os04g0510700 Oryza sativa ssp. japonica HOM05D006857 ORTHO05D008679 1.4e-117 427.9 399 52.1
Zm00001eb077400 Zea mays HOM05D006857 ORTHO05D008679 1.4e-117 427.9 402 52.2
Dinv27112 Davidia involucrata HOM05D006857 ORTHO05D008679 6.5e-115 419.1 303 65.7
TPR.G11804 Trifolium pratense HOM05D006857 ORTHO05D008679 3.0e-112 410.2 297 63.0
CDE02G1483 Ceratophyllum demersum HOM05D006857 ORTHO05D008679 7.0e-109 399.1 410 48.3
MBI10_g35430_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 5.4e-85 319.7 285 56.8
Pp3c15_24290 Physcomitrium patens HOM05D006857 ORTHO05D008679 1.3e-78 298.5 468 38.5
Mapoly0127s0023 Marchantia polymorpha HOM05D006857 ORTHO05D008679 5.8e-71 273.1 454 36.8
MBI10_g35433_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 8.3e-70 269.2 229 59.4
SHI00774 Sapria himalayana HOM05D006857 ORTHO05D008679 2.3e-67 261.2 262 50.8
BcaC08g44309 Brassica carinata HOM05D006857 ORTHO05D008679 1.6e-60 238.4 188 61.2
unitig_748.g8298 Utricularia gibba HOM05D006857 ORTHO05D008679 1.9e-58 231.5 208 52.4
FAN13G3085 Fragaria x ananassa HOM05D006857 ORTHO05D008679 2.1e-57 228.0 123 91.1
BcaC08g44310 Brassica carinata HOM05D006857 ORTHO05D008679 1.4e-56 225.3 202 55.0
FvH4_5g26950 Fragaria vesca HOM05D006857 ORTHO05D008679 6.4e-54 216.5 113 92.0
unitig_748.g8297 Utricularia gibba HOM05D006857 ORTHO05D008679 1.7e-46 191.8 185 51.4
CDE08G1596 Ceratophyllum demersum HOM05D006857 ORTHO05D008679 1.6e-44 185.3 171 53.2
AagrBONN_evm.TU.Sc2ySwM_117.1189 Anthoceros agrestis HOM05D006857 ORTHO05D008679 6.7e-43 179.9 249 41.8
FAN22G1763 Fragaria x ananassa HOM05D031841 ORTHO05D045631 8.7e-43 179.5 135 93.3
FvH4_4g04580 Fragaria vesca HOM05D031841 ORTHO05D045631 9.0e-40 169.5 138 89.1
MBI10_g35434_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 5.5e-37 160.2 162 50.6
FAN12G1723 Fragaria x ananassa HOM05D031841 ORTHO05D008679 4.0e-32 144.1 118 93.2
TPR.G25294 Trifolium pratense HOM05D006857 ORTHO05D008679 2.3e-27 128.3 104 55.8
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 1.1e-21 109.4 52 92.3
SEGI_21065 Sequoiadendron giganteum HOM05D006857 ORTHO05D008679 9.7e-18 96.3 98 48.0
RcHm_v2.0_Chr4g0395371 Rosa chinensis HOM05D003410 ORTHO05D003881 1.8e-16 92.0 118 47.5
FvH4_5g35622 Fragaria vesca HOM05D000003 ORTHO05D014221 2.4e-16 91.7 95 43.2
SHI00775 Sapria himalayana HOM05D000105 ORTHO05D000023 7.7e-15 86.7 100 46.0
MD13G1221100 Malus domestica HOM05D006857 ORTHO05D008679 3.8e-14 84.3 125 42.4
Prupe.2G060500 Prunus persica HOM05D000003 ORTHO05D000004 2.1e-12 78.6 77 49.4
Prupe.6G087800 Prunus persica HOM05D000003 ORTHO05D000004 3.6e-12 77.8 77 49.4
FvH4_2g34753 Fragaria vesca HOM05D000003 ORTHO05D014221 6.1e-12 77.0 83 43.4
FvH4_3g32111 Fragaria vesca HOM05D000003 ORTHO05D000004 1.4e-11 75.9 78 47.4
MCO07G483 Micromonas commoda HOM05D006857 ORTHO05D008679 6.7e-11 73.6 247 27.5
Prupe.1G202000 Prunus persica HOM05D000003 ORTHO05D000004 4.4e-10 70.9 119 36.1
MCO09G143 Micromonas commoda HOM05D006857 ORTHO05D008679 7.4e-10 70.1 195 29.2
RcHm_v2.0_Chr1g0334101 Rosa chinensis HOM05D000005 ORTHO05D000012 9.7e-10 69.7 112 34.8
RcHm_v2.0_Chr7g0210911 Rosa chinensis HOM05D000003 ORTHO05D000004 9.7e-10 69.7 101 35.6
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 3.7e-09 67.8 89 39.3
FvH4_2g05763 Fragaria vesca HOM05D000003 ORTHO05D000004 6.3e-09 67.0 92 37.0
MBI10_g35432_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 6.3e-09 67.0 95 42.1
RcHm_v2.0_Chr6g0286751 Rosa chinensis HOM05D003410 ORTHO05D003881 1.1e-08 66.2 139 33.8
COL.COLO4_07290 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.6e-07 61.6 83 38.6
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.5e-07 60.8 129 31.8
FvH4_4g05481 Fragaria vesca HOM05D008133 ORTHO05D009449 4.5e-07 60.8 44 54.5
Prupe.7G008600 Prunus persica HOM05D000003 ORTHO05D000004 4.5e-07 60.8 83 37.3
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.9e-07 60.5 129 31.8
RcHm_v2.0_Chr1g0326401 Rosa chinensis HOM05D000003 ORTHO05D000004 5.9e-07 60.5 87 37.9
COL.COLO4_35856 Corchorus olitorius HOM05D000003 ORTHO05D000004 7.7e-07 60.1 129 30.2
FvH4_5g08844 Fragaria vesca HOM05D000003 ORTHO05D000004 1.0e-06 59.7 104 31.7
COL.COLO4_18924 Corchorus olitorius HOM05D000003 ORTHO05D009449 1.7e-06 58.9 52 46.2
Manes.03G159000 Manihot esculenta HOM05D003410 ORTHO05D003881 1.7e-06 58.9 120 32.5
FvH4_1g19471 Fragaria vesca HOM05D000003 ORTHO05D000004 2.2e-06 58.5 87 35.6
FvH4_2g20580 Fragaria vesca HOM05D003410 ORTHO05D003881 2.2e-06 58.5 113 32.7
FAN24G0274 Fragaria x ananassa HOM05D003410 ORTHO05D003881 2.2e-06 58.5 113 32.7
HanXRQChr11g0332551 Helianthus annuus HOM05D006857 ORTHO05D008679 2.2e-06 58.5 51 58.8
Lj1g0000509 Lotus japonicus HOM05D000003 ORTHO05D000004 2.2e-06 58.5 91 35.2
Manes.15G045700 Manihot esculenta HOM05D003410 ORTHO05D003881 6.5e-06 57.0 96 38.5
FAN27G2598 Fragaria x ananassa HOM05D003410 ORTHO05D003881 8.5e-06 56.6 113 31.9


User provided reference genes

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