Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 9.2e-193 676.8 358 100.0
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.6e-187 658.7 358 96.9
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.6e-187 658.7 358 96.9
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 3.4e-187 658.3 358 96.6
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.8e-184 647.1 358 95.8
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.0e-183 645.2 358 95.3
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.2e-171 606.7 357 88.5
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 3.1e-148 528.9 365 77.3
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.0e-127 460.7 364 67.0
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 3.4e-123 445.7 343 67.3
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.0e-122 444.1 365 64.7
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 3.2e-121 439.1 365 64.7
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 5.5e-121 438.3 366 63.4
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 7.2e-121 438.0 360 64.4
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 1.4e-119 433.7 365 61.9
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 8.8e-119 431.0 365 63.3
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 4.4e-118 428.7 368 63.3
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 9.7e-118 427.6 365 63.0
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 9.7e-118 427.6 361 61.5
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.8e-117 426.0 360 62.8
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 2.8e-117 426.0 363 61.7
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 4.8e-117 425.2 365 63.0
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 6.3e-117 424.9 365 63.0
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 4.1e-116 422.2 358 62.0
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 3.5e-115 419.1 406 56.7
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 5.9e-115 418.3 365 61.4
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 1.7e-114 416.8 365 63.3
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.9e-114 416.0 366 60.4
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 2.9e-114 416.0 364 60.4
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 5.0e-114 415.2 359 61.8
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.1e-113 414.1 362 61.3
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 1.1e-113 414.1 367 60.8
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.1e-113 414.1 360 61.7
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 3.2e-113 412.5 358 60.9
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 5.5e-113 411.8 367 61.0
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 5.5e-113 411.8 357 62.7
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 5.5e-113 411.8 370 58.9
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 1.2e-112 410.6 364 60.2
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 1.6e-112 410.2 367 59.7
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 2.1e-112 409.8 365 59.7
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.7e-112 409.5 365 59.5
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 2.7e-112 409.5 361 60.1
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.0e-111 407.5 358 61.2
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 4.0e-111 405.6 368 61.4
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 2.0e-110 403.3 356 60.4
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 2.0e-110 403.3 357 60.5
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 9.7e-110 401.0 363 60.9
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.3e-109 400.6 357 60.2
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 2.2e-109 399.8 348 60.6
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 6.3e-109 398.3 359 60.7
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 6.3e-109 398.3 364 58.8
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 8.2e-109 397.9 340 62.6
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 9.1e-108 394.4 349 60.2
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.2e-107 394.0 363 58.4
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.1e-105 387.5 406 53.9
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 1.5e-105 387.1 361 59.8
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 7.2e-105 384.8 361 56.5
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 2.7e-104 382.9 359 57.4
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 6.1e-104 381.7 362 57.5
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.4e-103 380.6 320 63.4
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 1.8e-103 380.2 342 59.9
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 2.3e-103 379.8 365 56.2
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 6.8e-103 378.3 343 56.9
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 2.6e-102 376.3 409 51.6
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 5.7e-102 375.2 366 53.6
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.3e-101 374.0 345 57.4
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 4.1e-100 369.0 367 53.4
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 4.1e-100 369.0 341 58.1
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.7e-99 366.3 340 57.1
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.3e-98 364.0 341 57.2
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 3.8e-98 362.5 344 54.9
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.9e-97 360.1 360 53.9
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 5.5e-97 358.6 360 53.9
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 9.5e-97 357.8 335 57.9
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.6e-96 357.1 358 52.5
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 1.6e-96 357.1 361 52.9
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 4.7e-96 355.5 339 56.6
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 2.3e-95 353.2 360 52.8
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 5.2e-95 352.1 364 53.3
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.0e-94 350.1 360 52.2
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.0e-94 350.1 362 54.4
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 4.4e-94 349.0 370 52.2
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 5.7e-94 348.6 363 52.6
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.7e-93 347.1 359 52.6
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 3.7e-93 345.9 368 52.4
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 8.3e-93 344.7 355 53.5
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 2.4e-92 343.2 307 60.3
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 2.4e-92 343.2 360 51.7
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 5.4e-92 342.0 343 55.1
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 1.0e-90 337.8 343 55.7
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 1.7e-90 337.0 298 60.4
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 2.9e-90 336.3 298 63.8
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.9e-89 333.6 363 50.4
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 4.3e-89 332.4 363 49.9
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 7.3e-89 331.6 357 51.8
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 7.3e-89 331.6 363 49.9
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 7.3e-89 331.6 318 57.5
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.4e-87 327.4 359 49.3
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 2.3e-87 326.6 302 58.9
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 4.0e-87 325.9 354 52.3
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 4.4e-86 322.4 349 50.4
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 2.4e-84 316.6 344 50.6
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.7e-83 313.2 360 48.9
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 5.6e-81 305.4 359 47.9
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 2.1e-80 303.5 314 52.5
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 2.8e-80 303.1 369 46.3
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 2.0e-78 297.0 286 58.4
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 8.3e-77 291.6 341 46.6
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 2.1e-75 287.0 348 46.0
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 4.6e-75 285.8 342 48.8
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 3.3e-73 279.6 282 56.7
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.3e-69 267.7 356 42.4
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 4.6e-67 259.2 338 42.9
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 4.6e-67 259.2 358 43.0
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 1.9e-65 253.8 245 59.6
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.5e-65 253.4 352 43.5
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.6e-64 250.8 274 53.6
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.4e-63 246.9 352 43.2
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.4e-60 236.9 229 60.3
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 2.1e-59 233.8 242 54.1
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 1.7e-58 230.7 242 52.1
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.9e-57 227.3 353 40.2
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.4e-55 221.1 235 51.9
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 4.0e-55 219.5 345 38.8
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.3e-48 198.0 274 46.4
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 2.6e-46 190.3 298 40.3
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 3.5e-43 179.9 224 50.0
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 7.9e-43 178.7 308 37.7
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 8.4e-37 158.7 348 31.0
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 7.9e-35 152.1 134 54.5
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 5.6e-33 146.0 184 46.7
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 3.7e-32 143.3 129 53.5
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 6.2e-32 142.5 453 27.2
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 3.1e-31 140.2 371 29.9
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 7.9e-27 125.6 148 55.4
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 2.3e-18 97.4 170 37.6
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 2.6e-14 84.0 56 69.6
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 3.4e-14 83.6 56 69.6
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 1.0e-13 82.0 55 67.3
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 5.1e-10 69.7 144 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.5e-09 68.2 177 32.2
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 1.1e-07 62.0 291 24.1


User provided reference genes

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