Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.3e-193 679.5 335 100.0
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.5e-144 515.8 255 99.2
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 5.7e-144 514.6 394 71.6
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 7.9e-138 494.2 395 68.9
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 8.5e-132 474.2 234 99.6
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 6.7e-129 464.5 234 97.4
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 9.1e-126 454.1 250 91.6
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 4.2e-123 445.3 385 62.6
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 5.9e-117 424.9 396 60.9
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 2.6e-112 409.5 379 59.1
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 5.7e-112 408.3 378 60.1
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.8e-111 406.0 376 58.8
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 3.7e-111 405.6 379 58.3
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 3.7e-111 405.6 379 58.3
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 8.2e-111 404.4 376 58.8
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 4.1e-110 402.1 376 59.3
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.2e-109 400.6 391 57.0
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.6e-109 400.2 376 58.5
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 2.0e-109 399.8 377 59.2
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 2.7e-109 399.4 376 58.8
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 1.0e-108 397.5 380 58.2
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 1.3e-108 397.1 377 58.4
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 1.7e-108 396.7 376 58.8
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 1.7e-108 396.7 391 56.5
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 2.2e-108 396.4 390 58.2
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 1.5e-107 393.7 230 82.6
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 1.9e-107 393.3 393 56.7
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 1.9e-107 393.3 231 80.1
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.5e-107 392.9 376 58.2
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 3.2e-107 392.5 394 56.3
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 7.2e-107 391.3 389 57.3
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 9.4e-107 391.0 377 57.8
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.2e-106 390.6 390 56.7
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 1.6e-106 390.2 371 57.7
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 2.1e-106 389.8 233 81.5
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 2.1e-106 389.8 375 57.9
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 3.6e-106 389.0 375 58.7
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 3.6e-106 389.0 375 58.7
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 8.0e-106 387.9 351 60.7
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 1.0e-105 387.5 376 57.7
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.0e-105 387.5 245 77.6
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 1.0e-105 387.5 231 81.4
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 1.4e-105 387.1 381 56.7
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 1.4e-105 387.1 376 57.4
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 1.8e-105 386.7 228 80.7
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 3.0e-105 386.0 376 56.4
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 8.8e-105 384.4 230 77.4
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 1.2e-104 384.0 381 55.4
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 1.5e-104 383.6 378 56.1
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 1.5e-104 383.6 377 56.5
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 2.0e-104 383.3 377 55.7
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 2.6e-104 382.9 380 56.8
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 5.7e-104 381.7 378 55.3
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 5.7e-104 381.7 378 55.3
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 7.5e-104 381.3 229 80.3
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.3e-103 380.6 383 55.9
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 1.7e-103 380.2 381 55.4
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 1.7e-103 380.2 380 55.3
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 4.8e-103 378.6 376 55.9
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 6.3e-103 378.3 381 55.4
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.1e-102 377.5 387 56.6
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.4e-102 376.3 380 54.2
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.4e-102 376.3 377 55.2
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 3.1e-102 375.9 378 55.8
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 7.0e-102 374.8 232 76.3
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 9.1e-102 374.4 398 54.8
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 9.1e-102 374.4 382 54.7
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 1.6e-101 373.6 377 55.7
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 2.0e-101 373.2 230 76.1
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 4.5e-101 372.1 381 53.3
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 5.9e-101 371.7 376 54.5
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 1.3e-100 370.5 383 54.3
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 5.0e-100 368.6 380 54.5
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 5.0e-100 368.6 229 76.4
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 5.0e-100 368.6 377 54.9
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 8.6e-100 367.9 380 55.3
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 1.5e-99 367.1 390 54.4
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 1.5e-99 367.1 365 55.1
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 5.5e-99 365.2 366 55.5
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 7.2e-99 364.8 230 77.0
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 7.2e-99 364.8 230 77.0
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 7.2e-99 364.8 374 54.8
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 4.7e-98 362.1 230 76.1
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 1.3e-95 354.0 377 52.5
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 2.2e-95 353.2 231 73.2
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 8.3e-95 351.3 230 73.5
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.1e-94 350.9 230 71.7
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 7.0e-94 348.2 391 48.3
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 1.2e-93 347.4 523 43.2
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 3.5e-93 345.9 230 73.0
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 1.3e-92 344.0 376 50.8
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.3e-92 344.0 230 70.4
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 2.9e-92 342.8 343 57.1
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 2.1e-90 336.7 380 49.5
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.8e-89 333.6 380 49.5
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 2.3e-89 333.2 229 69.9
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.5e-88 330.5 379 48.5
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 9.8e-88 327.8 381 50.4
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 2.9e-87 326.2 344 53.8
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 5.4e-86 322.0 376 51.1
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.0e-85 320.1 382 47.6
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 7.8e-85 318.2 231 70.1
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 2.8e-82 309.7 229 68.1
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 6.8e-81 305.1 231 67.1
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 6.2e-74 282.0 318 53.1
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 6.8e-65 251.9 381 40.2
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 5.8e-64 248.8 385 39.5
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 2.9e-63 246.5 158 75.9
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.1e-62 244.6 142 82.4
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.9e-62 243.8 231 50.2
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.2e-61 241.1 387 38.0
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 4.3e-59 232.6 307 47.2
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 9.6e-59 231.5 383 38.6
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 1.9e-38 164.1 272 39.0
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 7.1e-38 162.2 110 68.2
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 1.8e-28 131.0 178 39.9
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 3.0e-28 130.2 180 41.1
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 8.7e-28 128.6 186 38.7
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 1.1e-25 121.7 86 72.1
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.9e-22 110.9 63 84.1
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 3.3e-19 100.1 106 48.1
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 1.5e-16 91.3 221 34.4
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 3.2e-14 83.6 53 71.7
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.7e-13 80.5 70 55.7
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 1.5e-11 74.7 36 97.2
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-11 72.8 72 50.0
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 1.8e-09 67.8 36 88.9
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 2.4e-09 67.4 97 41.2
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.1e-09 67.0 85 40.0
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 9.1e-09 65.5 85 40.0
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.0e-08 64.3 85 41.2
SMO201G0205 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 2.5e-06 57.4 55 49.1


User provided reference genes

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