Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2604 Fragaria x ananassa HOM05D000088 ORTHO05D002762 8.2e-46 186.8 102 100.0
FvH4_4g00150 Fragaria vesca HOM05D000088 ORTHO05D002762 1.1e-42 176.4 97 91.8
FAN22G0919 Fragaria x ananassa HOM05D000088 ORTHO05D002762 1.1e-42 176.4 97 91.8
FAN22G2128 Fragaria x ananassa HOM05D000088 ORTHO05D002762 1.1e-42 176.4 97 93.8
FAN17G2708 Fragaria x ananassa HOM05D000088 ORTHO05D002762 7.2e-42 173.7 97 96.9
FAN12G0270 Fragaria x ananassa HOM05D000088 ORTHO05D002762 1.6e-41 172.6 97 95.9
FAN12G3288 Fragaria x ananassa HOM05D000088 ORTHO05D002762 1.6e-41 172.6 97 95.9
RcHm_v2.0_Chr4g0384771 Rosa chinensis HOM05D000088 ORTHO05D002762 3.3e-39 164.9 101 86.1
Prupe.1G001200 Prunus persica HOM05D000088 ORTHO05D002762 1.2e-33 146.4 100 79.0
MD04G1001300 Malus domestica HOM05D000088 ORTHO05D002762 1.6e-33 146.0 100 81.0
MD00G1091600 Malus domestica HOM05D000088 ORTHO05D002762 3.0e-32 141.7 100 78.0
MD04G1001200 Malus domestica HOM05D000088 ORTHO05D002762 6.8e-32 140.6 100 79.0
MD13G1286000 Malus domestica HOM05D000088 ORTHO05D002762 1.5e-31 139.4 100 78.0
Prupe.1G001300 Prunus persica HOM05D000088 ORTHO05D002762 2.0e-31 139.0 100 77.0
RcHm_v2.0_Chr3g0494021 Rosa chinensis HOM05D000088 ORTHO05D002762 3.4e-31 138.3 100 85.0
CANSAT80G0781 Cannabis sativa HOM05D000088 ORTHO05D002762 3.3e-26 121.7 104 68.3
QL11p007266 Quercus lobata HOM05D000088 ORTHO05D002762 9.5e-26 120.2 103 71.8
Ciclev10009018m.g Citrus clementina HOM05D000088 ORTHO05D002762 3.4e-23 111.7 98 69.4
Glyma.05G220200 Glycine max HOM05D000088 ORTHO05D002762 3.4e-23 111.7 103 67.0
Glyma.08G026500 Glycine max HOM05D000088 ORTHO05D002762 3.4e-23 111.7 103 67.0
Phvul.002G301900 Phaseolus vulgaris HOM05D000088 ORTHO05D002762 3.4e-23 111.7 103 67.0
VMungo0251G2216 Vigna mungo HOM05D000088 ORTHO05D002762 3.4e-23 111.7 103 67.0
arahy.Tifrunner.gnm1.ann1.0BXA8A Arachis hypogaea HOM05D000088 ORTHO05D002762 5.7e-23 110.9 101 68.3
arahy.Tifrunner.gnm1.ann1.A1WLL6 Arachis hypogaea HOM05D000088 ORTHO05D002762 5.7e-23 110.9 101 68.3
arahy.Tifrunner.gnm1.ann1.KX010W Arachis hypogaea HOM05D000088 ORTHO05D002762 5.7e-23 110.9 101 68.3
arahy.Tifrunner.gnm1.ann1.Y5S0RG Arachis hypogaea HOM05D000088 ORTHO05D002762 5.7e-23 110.9 101 68.3
Haze_21255 Corylus avellana HOM05D000088 ORTHO05D002762 5.7e-23 110.9 103 66.0
Manes.01G125400 Manihot esculenta HOM05D000088 ORTHO05D002762 7.5e-23 110.5 103 68.9
Eucgr.C00057 Eucalyptus grandis HOM05D000088 ORTHO05D002762 1.3e-22 109.8 94 64.9
QL11p007210 Quercus lobata HOM05D000088 ORTHO05D002762 1.3e-22 109.8 99 67.7
Eucgr.C00056 Eucalyptus grandis HOM05D000088 ORTHO05D002762 2.8e-22 108.6 96 65.6
Atru.chr7.998 Acer truncatum HOM05D000088 ORTHO05D002762 4.9e-22 107.8 103 65.0
Dinv26489 Davidia involucrata HOM05D000088 ORTHO05D002762 6.3e-22 107.5 101 68.3
Lj4g0011870 Lotus japonicus HOM05D000088 ORTHO05D002762 6.3e-22 107.5 98 66.3
CiPaw.15G162800 Carya illinoinensis HOM05D000088 ORTHO05D002762 1.1e-21 106.7 103 66.0
Dinv12624 Davidia involucrata HOM05D000088 ORTHO05D002762 1.1e-21 106.7 101 68.3
CiPaw.16G105700 Carya illinoinensis HOM05D000088 ORTHO05D002762 1.4e-21 106.3 103 66.0
Haze_19078 Corylus avellana HOM05D000088 ORTHO05D002762 1.4e-21 106.3 103 65.0
Haze_19079 Corylus avellana HOM05D000088 ORTHO05D002762 1.4e-21 106.3 103 65.0
Lj2g0016943 Lotus japonicus HOM05D000088 ORTHO05D002762 4.1e-21 104.8 100 64.0
TPR.G25482 Trifolium pratense HOM05D000088 ORTHO05D002762 5.4e-21 104.4 101 63.4
Ca_17444_v3 Cicer arietinum L. HOM05D000088 ORTHO05D002762 7.0e-21 104.0 101 63.4
Ca_30019_v3 Cicer arietinum L. HOM05D000088 ORTHO05D002762 7.0e-21 104.0 101 63.4
Lalb_Chr16g0390841 Lupinus albus HOM05D000088 ORTHO05D002762 1.2e-20 103.2 98 65.3
Medtr8g100085 Medicago truncatula HOM05D000088 ORTHO05D002762 1.2e-20 103.2 101 62.4
Manes.04G075100 Manihot esculenta HOM05D000088 ORTHO05D002762 2.7e-20 102.1 103 62.1
CSS0022877 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002762 3.5e-20 101.7 101 64.4
Lalb_Chr09g0332021 Lupinus albus HOM05D000088 ORTHO05D002762 3.5e-20 101.7 96 65.6
Rhsim03G0270000 Rhododendron simsii HOM05D000088 ORTHO05D002762 3.5e-20 101.7 101 64.4
Manes.08G092400 Manihot esculenta HOM05D000088 ORTHO05D002762 4.5e-20 101.3 103 63.1
Lj5C797T8 Lonicera japonica HOM05D000088 ORTHO05D002762 5.9e-20 100.9 101 65.3
Manes.02G083100 Manihot esculenta HOM05D000088 ORTHO05D002762 7.8e-20 100.5 103 61.2
ECA234G4230 Erigeron canadensis HOM05D000088 ORTHO05D002762 1.0e-19 100.1 101 62.4
HanXRQChr10g0309451 Helianthus annuus HOM05D000088 ORTHO05D002762 1.0e-19 100.1 101 62.4
Phvul.004G178600 Phaseolus vulgaris HOM05D000088 ORTHO05D002762 1.0e-19 100.1 103 61.2
Cc06_g23750 Coffea canephora HOM05D000088 ORTHO05D002762 1.3e-19 99.8 101 65.3
Manes.02G082900 Manihot esculenta HOM05D000088 ORTHO05D002762 1.7e-19 99.4 103 62.1
vmacro22297 Vaccinium macrocarpon HOM05D000088 ORTHO05D002762 1.7e-19 99.4 101 62.4
Ah.10g032840 Amaranthus hybridus HOM05D001475 ORTHO05D001525 2.3e-19 99.0 102 62.7
Psat7g022040 Pisum sativum HOM05D000088 ORTHO05D002762 1.1e-18 96.7 101 62.4
VMungo0464G1675 Vigna mungo HOM05D000088 ORTHO05D002762 1.1e-18 96.7 101 60.4
ClCG11G011180 Citrullus lanatus HOM05D000088 ORTHO05D002762 1.5e-18 96.3 103 62.1
PGR142G3857 Punica granatum HOM05D000088 ORTHO05D002762 3.3e-18 95.1 97 60.8
ECA236G3318 Erigeron canadensis HOM05D000088 ORTHO05D002762 4.3e-18 94.7 95 61.1
Lalb_Chr05g0223841 Lupinus albus HOM05D000088 ORTHO05D002762 4.3e-18 94.7 99 58.6
MELO3C003908.2 Cucumis melo HOM05D000088 ORTHO05D002762 7.3e-18 94.0 103 61.2
CsaV3_2G009250 Cucumis sativus L. HOM05D000088 ORTHO05D002762 7.3e-18 94.0 103 61.2
DCAR_020451 Daucus carota HOM05D000088 ORTHO05D002762 7.3e-18 94.0 105 60.0
HanXRQChr09g0261971 Helianthus annuus HOM05D000088 ORTHO05D002762 1.2e-17 93.2 101 58.4
Sed0026095 Sechium edule HOM05D000088 ORTHO05D002762 1.2e-17 93.2 96 62.5
HanXRQChr05g0138981 Helianthus annuus HOM05D000088 ORTHO05D002762 2.1e-17 92.4 101 59.4
HanXRQChr12g0358531 Helianthus annuus HOM05D000088 ORTHO05D002762 2.1e-17 92.4 101 59.4
Actinidia02549 Actinidia chinensis HOM05D000088 ORTHO05D002762 2.8e-17 92.0 101 61.4
Peaxi162Scf00474g00312 Petunia axillaris HOM05D000088 ORTHO05D002762 6.1e-17 90.9 101 59.4
Sc09g0007510 Simmondsia chinensis HOM05D000088 ORTHO05D002762 6.1e-17 90.9 102 60.8
Sc23g0004560 Simmondsia chinensis HOM05D000088 ORTHO05D002762 6.1e-17 90.9 98 60.2
Ah.11g043550 Amaranthus hybridus HOM05D000088 ORTHO05D002762 1.4e-16 89.7 102 59.8
Nitab4.5_0007205g0020 Nicotiana tabacum HOM05D000088 ORTHO05D002762 1.8e-16 89.4 101 59.4
Lsat_1_v5_gn_8_70041 Lactuca sativa HOM05D000088 ORTHO05D002762 5.2e-16 87.8 92 58.7
Rhsim01G0106600 Rhododendron simsii HOM05D000088 ORTHO05D002762 6.8e-16 87.4 101 58.4
Nitab4.5_0000019g0020 Nicotiana tabacum HOM05D000088 ORTHO05D002762 8.9e-16 87.0 101 58.4
PGR044G1559 Punica granatum HOM05D000088 ORTHO05D002762 8.9e-16 87.0 104 61.5
Solyc07g042890.3 Solanum lycopersicum HOM05D000088 ORTHO05D002762 8.9e-16 87.0 100 58.0
Sopen07g022490 Solanum pennellii HOM05D000088 ORTHO05D002762 8.9e-16 87.0 100 58.0
CAN.G57.18 Capsicum annuum HOM05D000088 ORTHO05D002762 1.5e-15 86.3 100 57.0
CAN.G57.26 Capsicum annuum HOM05D000088 ORTHO05D002762 1.5e-15 86.3 100 58.0
Nitab4.5_0000073g0460 Nicotiana tabacum HOM05D000088 ORTHO05D002762 1.5e-15 86.3 101 59.4
MSTRG.26512 Avicennia marina HOM05D000088 ORTHO05D002762 2.0e-15 85.9 100 59.0
Nn5g26971 Nelumbo nucifera HOM05D000088 ORTHO05D002762 2.0e-15 85.9 95 55.8
Nn8g41227 Nelumbo nucifera HOM05D000088 ORTHO05D002762 2.0e-15 85.9 95 54.7
Lsat_1_v5_gn_5_81101 Lactuca sativa HOM05D000088 ORTHO05D002762 2.6e-15 85.5 105 56.2
Sopen07g022370 Solanum pennellii HOM05D000088 ORTHO05D002762 2.6e-15 85.5 100 57.0
EL10Ac2g03614 Beta vulgaris HOM05D000088 ORTHO05D002762 4.4e-15 84.7 102 56.9
AUR62020741 Chenopodium quinoa HOM05D000088 ORTHO05D002762 4.4e-15 84.7 102 55.9
Gohir.A07G001100 Gossypium hirsutum HOM05D000088 ORTHO05D002762 7.5e-15 84.0 92 57.6
Gohir.D07G001500 Gossypium hirsutum HOM05D000088 ORTHO05D002762 7.5e-15 84.0 92 57.6
Gorai.001G001200 Gossypium raimondii HOM05D000088 ORTHO05D002762 7.5e-15 84.0 92 57.6
Duzib168G2132 Durio zibethinus HOM05D000088 ORTHO05D002762 9.8e-15 83.6 92 57.6
Solyc07g042680.3 Solanum lycopersicum HOM05D000088 ORTHO05D002762 9.8e-15 83.6 100 56.0
COL.COLO4_18644 Corchorus olitorius HOM05D000088 ORTHO05D002762 1.7e-14 82.8 92 57.6
Oeu036960.1 Olea europaea HOM05D000088 ORTHO05D002762 1.7e-14 82.8 100 58.0
MSTRG.10475 Avicennia marina HOM05D000088 ORTHO05D002762 2.2e-14 82.4 100 57.0
Migut.J00853 Erythranthe guttata HOM05D000088 ORTHO05D002762 2.2e-14 82.4 101 59.4
AUR62027972 Chenopodium quinoa HOM05D000088 ORTHO05D002762 2.9e-14 82.0 102 55.9
Aqoxy7G02660 Aquilegia oxysepala HOM05D000088 ORTHO05D002762 3.7e-14 81.6 96 58.3
Duzib150G1047 Durio zibethinus HOM05D000088 ORTHO05D002762 4.9e-14 81.3 92 56.5
Thecc.09G000800 Theobroma cacao HOM05D000088 ORTHO05D002762 4.9e-14 81.3 92 56.5
Duzib187G0866 Durio zibethinus HOM05D000088 ORTHO05D002762 6.4e-14 80.9 92 55.4
Gohir.A05G066500 Gossypium hirsutum HOM05D000088 ORTHO05D002762 6.4e-14 80.9 92 56.5
Gorai.009G069900 Gossypium raimondii HOM05D000088 ORTHO05D002762 6.4e-14 80.9 92 56.5
Potri.006G280000 Populus trichocarpa HOM05D000088 ORTHO05D002762 8.3e-14 80.5 92 57.6
Cpa.g.sc148.11 Carica papaya HOM05D000088 ORTHO05D002762 1.1e-13 80.1 91 57.1
DCAR_009051 Daucus carota HOM05D000088 ORTHO05D002762 1.1e-13 80.1 101 53.5
Potri.018G001800 Populus trichocarpa HOM05D000088 ORTHO05D002762 1.1e-13 80.1 92 57.6
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.1e-13 80.1 92 57.6
vmacro20745 Vaccinium macrocarpon HOM05D000088 ORTHO05D002762 1.1e-13 80.1 101 55.4
Gohir.D05G069000 Gossypium hirsutum HOM05D000088 ORTHO05D002762 1.4e-13 79.7 92 55.4
Oeu021244.1 Olea europaea HOM05D000088 ORTHO05D002762 1.4e-13 79.7 95 57.9
Oeu031064.1 Olea europaea HOM05D000088 ORTHO05D002762 1.4e-13 79.7 100 57.0
Hund03217 Selenicereus undatus HOM05D000088 ORTHO05D002762 1.4e-13 79.7 102 57.8
TAR636G3657 Trochodendron aralioides HOM05D000088 ORTHO05D002762 2.4e-13 79.0 96 56.2
TAR383G0951 Trochodendron aralioides HOM05D000088 ORTHO05D002762 7.0e-13 77.4 96 58.3
SalBow6G0982 Salvia bowleyana HOM05D000088 ORTHO05D002762 9.2e-13 77.0 101 54.5
Cpa.g.sc148.10 Carica papaya HOM05D000088 ORTHO05D002762 1.2e-12 76.6 95 56.8
PGR044G1224 Punica granatum HOM05D000088 ORTHO05D002762 1.6e-12 76.3 104 57.7
Sabra06G0217100 Salix brachista HOM05D000088 ORTHO05D002762 1.6e-12 76.3 91 53.8
TAR626G0151 Trochodendron aralioides HOM05D000088 ORTHO05D002762 2.0e-12 75.9 97 55.7
TAR626G1814 Trochodendron aralioides HOM05D000088 ORTHO05D002762 2.0e-12 75.9 97 55.7
TWI32G0142 Tripterygium wilfordii HOM05D000088 ORTHO05D002762 2.7e-12 75.5 92 55.4
Potri.018G001900 Populus trichocarpa HOM05D000088 ORTHO05D002762 3.5e-12 75.1 92 53.3
MBI16_g00830_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D002762 4.6e-12 74.7 89 50.6
Peaxi162Scf00047g02443 Petunia axillaris HOM05D000088 ORTHO05D002762 4.6e-12 74.7 102 55.9
SHI03145 Sapria himalayana HOM05D000088 ORTHO05D002762 4.6e-12 74.7 82 62.2
TWI34G1420 Tripterygium wilfordii HOM05D000088 ORTHO05D002762 4.6e-12 74.7 92 54.3
Lsat_1_v5_gn_2_113820 Lactuca sativa HOM05D000088 ORTHO05D002762 6.0e-12 74.3 76 63.2
TWI63G0358 Tripterygium wilfordii HOM05D000088 ORTHO05D002762 7.8e-12 73.9 92 54.3
MSTRG.19406 Avicennia marina HOM05D000088 ORTHO05D002762 2.3e-11 72.4 88 55.7
CSS0039565 Camellia sinensis var. sinensis HOM05D000088 ORTHO05D002762 3.0e-11 72.0 101 55.4
CAN.G218.5 Capsicum annuum HOM05D000088 ORTHO05D002762 3.0e-11 72.0 101 53.5
Atru.chr7.2705 Acer truncatum HOM05D000088 ORTHO05D002762 6.6e-11 70.9 91 53.8
Ciclev10008432m.g Citrus clementina HOM05D000088 ORTHO05D002762 6.6e-11 70.9 91 54.9
SGA_v2.0_scaffold21G09595 Striga asiatica HOM05D000088 ORTHO05D002762 1.1e-10 70.1 105 52.4
SalBow6G4148 Salvia bowleyana HOM05D000088 ORTHO05D002762 2.5e-10 68.9 101 53.5
PGSC0003DMG402002925 Solanum tuberosum HOM05D000088 ORTHO05D002762 3.3e-10 68.6 94 52.1
PGSC0003DMG400002923 Solanum tuberosum HOM05D000088 ORTHO05D002762 7.3e-10 67.4 92 50.0
SGA_v2.0_scaffold296G47575 Striga asiatica HOM05D000088 ORTHO05D002762 7.3e-10 67.4 106 51.9
Potri.006G279900 Populus trichocarpa HOM05D000088 ORTHO05D002762 1.6e-09 66.2 85 47.1
PSO017G6096 Papaver somniferum HOM05D000088 ORTHO05D002762 2.1e-09 65.9 106 50.9
PSO170G2964 Papaver somniferum HOM05D000088 ORTHO05D002762 2.1e-09 65.9 106 50.9
Solyc12g009340.2 Solanum lycopersicum HOM05D000088 ORTHO05D002762 2.1e-09 65.9 102 50.0
Sopen12g004320 Solanum pennellii HOM05D000088 ORTHO05D002762 2.1e-09 65.9 102 50.0
C04p53950 Brassica napus HOM05D000088 ORTHO05D002762 6.2e-09 64.3 103 42.7
Sabra06G0217000 Salix brachista HOM05D000088 ORTHO05D002762 6.2e-09 64.3 85 47.1
BolC4t26945H Brassica oleracea HOM05D000088 ORTHO05D002762 1.4e-08 63.2 96 43.8
Solyc12g015985.1 Solanum lycopersicum HOM05D000088 ORTHO05D002762 1.4e-08 63.2 102 48.0
Zm00001eb430600 Zea mays HOM05D000088 ORTHO05D002762 1.4e-08 63.2 87 48.3
Aa31LG2G19140 Aethionema arabicum HOM05D000088 ORTHO05D002762 1.8e-08 62.8 82 50.0
BcaC02g08470 Brassica carinata HOM05D000088 ORTHO05D002762 2.3e-08 62.4 94 43.6
A01p07060 Brassica napus HOM05D000088 ORTHO05D002762 2.3e-08 62.4 89 49.4
BraA01t00658Z Brassica rapa HOM05D000088 ORTHO05D002762 2.3e-08 62.4 89 49.4
Sp7g29050 Schrenkiella parvula HOM05D000088 ORTHO05D002762 2.3e-08 62.4 90 50.0
THA.LOC104803888 Tarenaya hassleriana HOM05D000088 ORTHO05D002762 2.3e-08 62.4 86 48.8
Zm00001eb071280 Zea mays HOM05D000088 ORTHO05D002762 3.1e-08 62.0 87 47.1
AL7G20900 Arabidopsis lyrata HOM05D000088 ORTHO05D002762 4.0e-08 61.6 86 48.8
CDE07G1656 Ceratophyllum demersum HOM05D000088 ORTHO05D002762 4.0e-08 61.6 89 51.7
Thhalv10025332m.g Eutrema salsugineum HOM05D000088 ORTHO05D002762 5.2e-08 61.2 90 48.9
CARHR239080 Cardamine hirsuta HOM05D000088 ORTHO05D002762 6.8e-08 60.8 86 48.8
Carub.0007s0936 Capsella rubella HOM05D000088 ORTHO05D002762 8.9e-08 60.5 86 48.8
THA.LOC104819917 Tarenaya hassleriana HOM05D000088 ORTHO05D002762 8.9e-08 60.5 83 49.4
BcaC09g51900 Brassica carinata HOM05D000088 ORTHO05D002762 1.5e-07 59.7 89 48.3
C01p07810 Brassica napus HOM05D000088 ORTHO05D002762 1.5e-07 59.7 89 48.3
BolC1t00767H Brassica oleracea HOM05D000088 ORTHO05D002762 1.5e-07 59.7 89 48.3
PSO063G0501 Papaver somniferum HOM05D000088 ORTHO05D002762 2.0e-07 59.3 92 42.4
PSO170G5580 Papaver somniferum HOM05D000088 ORTHO05D002762 2.0e-07 59.3 92 42.4
AT4G31170 Arabidopsis thaliana HOM05D000088 ORTHO05D002762 2.6e-07 58.9 86 47.7
AL4G14750 Arabidopsis lyrata HOM05D000088 ORTHO05D002762 3.4e-07 58.5 86 46.5
AT2G24360 Arabidopsis thaliana HOM05D000088 ORTHO05D002762 3.4e-07 58.5 86 46.5
BraA04t17477Z Brassica rapa HOM05D000088 ORTHO05D002762 3.4e-07 58.5 98 43.9
Sp4g03360 Schrenkiella parvula HOM05D000088 ORTHO05D002762 7.5e-07 57.4 86 45.3
Actinidia07559 Actinidia chinensis HOM05D000088 ORTHO05D002762 9.8e-07 57.0 49 67.3
Os04g0608900 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D002762 3.7e-06 55.1 95 47.4
THA.LOC104803583 Tarenaya hassleriana HOM05D000088 ORTHO05D002762 3.7e-06 55.1 62 54.8
Carub.0004s0369 Capsella rubella HOM05D000088 ORTHO05D002762 6.4e-06 54.3 86 47.7
HPP92_021900 Vanilla planifolia HOM05D000088 ORTHO05D002762 6.4e-06 54.3 100 46.0
Os08g0224100 Oryza sativa ssp. japonica HOM05D000088 ORTHO05D002762 8.3e-06 53.9 95 47.4


User provided reference genes

Program Settings