Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.4e-179 632.9 337 100.0
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 3.0e-161 572.0 317 96.2
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 3.0e-161 572.0 317 96.2
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 4.3e-160 568.2 337 91.7
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 7.2e-147 524.2 337 84.9
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 6.0e-85 318.5 372 48.7
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.1e-81 307.8 154 97.4
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 2.2e-79 300.1 170 88.8
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 6.4e-79 298.5 308 52.9
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 1.3e-71 274.2 346 51.7
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 5.4e-70 268.9 366 45.4
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 5.1e-68 262.3 339 46.9
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 5.6e-67 258.8 339 44.5
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 7.4e-67 258.5 339 44.5
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 2.0e-64 250.4 343 42.3
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 2.6e-64 250.0 348 42.5
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 7.6e-64 248.4 335 42.4
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 1.1e-62 244.6 337 43.3
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 5.5e-62 242.3 334 43.7
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 7.9e-61 238.4 339 42.8
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 7.9e-61 238.4 302 45.0
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 7.9e-61 238.4 338 42.9
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 1.9e-59 233.8 344 42.7
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 1.9e-59 233.8 321 43.3
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 3.3e-59 233.0 340 42.1
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 5.6e-59 232.3 341 42.8
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 2.1e-58 230.3 319 42.6
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 2.4e-57 226.9 340 41.2
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 4.0e-57 226.1 348 44.3
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 5.3e-57 225.7 338 41.1
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 1.5e-56 224.2 341 41.1
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 3.0e-52 209.9 318 41.8
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 2.5e-51 206.8 328 41.2
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 1.3e-50 204.5 316 39.6
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 2.8e-50 203.4 343 36.7
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 8.2e-50 201.8 333 40.5
GSVIVG01004087001 Vitis vinifera HOM05D006585 ORTHO05D007798 1.4e-49 201.1 339 39.8
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 2.4e-49 200.3 282 41.1
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 6.9e-49 198.7 320 39.1
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 1.5e-48 197.6 319 40.1
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 8.4e-47 191.8 317 39.4
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 2.5e-46 190.3 321 39.3
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 9.3e-46 188.3 323 36.8
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 2.1e-45 187.2 339 38.3
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 3.5e-45 186.4 322 38.5
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 1.0e-44 184.9 323 36.8
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 3.0e-44 183.3 340 39.4
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 2.2e-42 177.2 344 35.2
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 9.0e-41 171.8 334 37.1
Nn3g16750 Nelumbo nucifera HOM05D006585 ORTHO05D007798 2.6e-40 170.2 339 36.6
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 7.7e-40 168.7 349 34.1
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 1.0e-39 168.3 360 33.3
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 1.3e-39 167.9 348 36.5
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 8.5e-39 165.2 340 32.6
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 4.2e-38 162.9 322 35.1
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 1.6e-37 161.0 324 34.9
Ciclev10033875m.g Citrus clementina HOM05D006585 ORTHO05D007798 2.7e-37 160.2 341 35.5
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 6.1e-37 159.1 349 37.2
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 1.4e-36 157.9 347 33.7
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 2.3e-36 157.1 344 34.3
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 8.8e-36 155.2 338 34.9
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 1.5e-35 154.5 341 33.7
COL.COLO4_30156 Corchorus olitorius HOM05D006585 ORTHO05D007798 5.7e-35 152.5 311 33.8
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 7.4e-35 152.1 347 33.7
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 2.2e-34 150.6 318 34.0
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 4.8e-34 149.4 384 33.6
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 5.3e-33 146.0 368 36.4
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 1.2e-32 144.8 290 33.1
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 2.0e-32 144.1 347 32.0
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 3.4e-32 143.3 337 33.8
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 3.4e-32 143.3 286 35.3
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 1.3e-31 141.4 287 34.8
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 8.5e-31 138.7 326 32.2
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 1.1e-30 138.3 332 33.1
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 1.4e-30 137.9 386 34.7
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 5.5e-30 136.0 352 31.0
Cc11_g15560 Coffea canephora HOM05D006585 ORTHO05D007798 1.6e-29 134.4 355 32.7
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 6.1e-29 132.5 124 54.0
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 1.0e-28 131.7 245 40.0
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 8.8e-28 128.6 149 47.7
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 1.5e-27 127.9 394 33.5
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 4.4e-27 126.3 216 35.6
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 4.4e-27 126.3 111 54.1
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 9.7e-27 125.2 337 30.3
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 3.7e-26 123.2 435 31.3
Ah.03g133160 Amaranthus hybridus HOM05D006585 ORTHO05D007798 2.4e-25 120.6 321 31.8
ATR1154G038 Amborella trichopoda HOM05D006585 ORTHO05D007798 2.4e-25 120.6 323 28.2
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 7.0e-25 119.0 215 38.6
Haze_12236 Corylus avellana HOM05D006585 ORTHO05D007798 1.0e-23 115.2 269 33.8
PSO832G3049 Papaver somniferum HOM05D000629 ORTHO05D007798 2.2e-23 114.0 188 37.8
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 2.9e-23 113.6 97 56.7
HPP92_008331 Vanilla planifolia HOM05D006585 ORTHO05D007798 2.9e-23 113.6 148 42.6
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 6.5e-23 112.5 402 31.6
PSO063G7660 Papaver somniferum HOM05D000629 ORTHO05D007798 7.2e-22 109.0 190 36.8
PGR119G1584 Punica granatum HOM05D006585 ORTHO05D007798 7.2e-22 109.0 345 29.9
Actinidia08143 Actinidia chinensis HOM05D006585 ORTHO05D007798 1.2e-21 108.2 366 36.3
Rhsim12G0041300 Rhododendron simsii HOM05D006585 ORTHO05D007798 3.6e-21 106.7 432 28.5
ATR1154G026 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.0e-20 105.1 145 35.9
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 3.0e-20 103.6 138 44.2
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 8.8e-20 102.1 218 30.3
TPR.G34666 Trifolium pratense HOM05D006585 ORTHO05D007798 9.7e-19 98.6 202 35.1
Zm00001eb382430 Zea mays HOM05D006585 ORTHO05D007798 4.1e-17 93.2 165 37.0
Atru.chr11.2134 Acer truncatum HOM05D006585 ORTHO05D007798 6.5e-15 85.9 310 27.7
Lalb_Chr16g0392231 Lupinus albus HOM05D006585 ORTHO05D007798 1.1e-14 85.1 107 43.9
Cc04_g11830 Coffea canephora HOM05D006585 ORTHO05D007798 1.9e-14 84.3 169 33.1
PSO063G0496 Papaver somniferum HOM05D006585 ORTHO05D007798 1.9e-14 84.3 182 34.1
Atru.chr11.2118 Acer truncatum HOM05D006585 ORTHO05D007798 2.7e-13 80.5 310 26.8
EL10Ac5g10683 Beta vulgaris HOM05D006585 ORTHO05D007798 3.6e-13 80.1 112 39.3
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 6.1e-13 79.3 106 42.5
SEGI_25539 Sequoiadendron giganteum HOM05D006585 ORTHO05D007798 7.5e-11 72.4 144 33.3
SGA_v2.0_scaffold779G53588 Striga asiatica HOM05D006585 ORTHO05D007798 2.4e-09 67.4 93 38.7
SGA_v2.0_scaffold34G13586 Striga asiatica HOM05D006585 ORTHO05D007798 4.1e-09 66.6 93 38.7
CDE06G0796 Ceratophyllum demersum HOM05D006585 ORTHO05D007798 2.5e-06 57.4 95 34.7


User provided reference genes

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