Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2541 Fragaria x ananassa HOM05D007340 ORTHO05D008979 2.2e-99 367.1 200 100.0
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 1.5e-95 354.4 200 88.0
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 1.6e-94 350.9 200 87.0
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 1.0e-75 288.5 200 77.0
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 3.6e-65 253.4 200 67.0
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 2.6e-60 237.3 200 61.5
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 1.7e-54 218.0 215 54.9
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 9.1e-53 212.2 220 48.6
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 5.9e-52 209.5 220 49.5
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 1.7e-51 208.0 220 49.1
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 5.2e-48 196.4 206 47.6
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 5.2e-48 196.4 206 47.6
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 4.1e-45 186.8 222 42.8
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 1.2e-44 185.3 223 43.0
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 1.2e-44 185.3 223 43.0
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 2.6e-44 184.1 217 44.2
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 5.9e-44 183.0 208 44.7
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 7.7e-44 182.6 214 43.9
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 1.7e-43 181.4 223 40.8
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 3.8e-43 180.3 182 46.7
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 1.9e-42 177.9 223 42.2
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 1.2e-41 175.3 223 41.7
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 2.1e-41 174.5 221 41.2
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 2.1e-41 174.5 221 39.8
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 3.6e-41 173.7 221 41.2
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 4.7e-41 173.3 161 50.3
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 6.1e-41 172.9 214 41.6
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 6.1e-41 172.9 198 45.5
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 6.7e-40 169.5 221 38.9
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 5.7e-39 166.4 214 41.1
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 5.7e-39 166.4 214 42.5
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 7.5e-39 166.0 212 42.0
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 4.8e-38 163.3 215 43.7
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 1.1e-37 162.2 202 41.6
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.4e-37 161.8 205 41.5
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 2.4e-37 161.0 215 43.7
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 4.1e-37 160.2 205 42.0
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 5.3e-37 159.8 206 40.8
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 7.0e-37 159.5 213 38.5
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 7.0e-37 159.5 211 41.2
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 7.0e-37 159.5 215 40.5
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 1.2e-36 158.7 211 40.8
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 1.6e-36 158.3 205 41.5
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 4.5e-36 156.8 210 37.1
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 1.0e-35 155.6 217 36.9
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 2.2e-35 154.5 210 37.1
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 2.9e-35 154.1 163 44.8
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 8.5e-35 152.5 187 41.2
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 8.5e-35 152.5 159 45.3
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 1.9e-34 151.4 201 39.3
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 5.5e-34 149.8 202 38.6
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 7.2e-34 149.4 161 41.0
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 2.1e-33 147.9 211 37.4
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 2.7e-33 147.5 221 38.5
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 4.7e-33 146.7 208 39.4
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 1.0e-32 145.6 160 42.5
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 3.0e-32 144.1 164 40.2
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 4.0e-32 143.7 170 42.4
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 4.0e-32 143.7 160 41.9
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 5.2e-32 143.3 160 42.5
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 5.2e-32 143.3 190 39.5
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 6.8e-32 142.9 204 40.2
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 1.2e-31 142.1 171 52.0
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 1.2e-31 142.1 203 37.4
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 1.5e-31 141.7 187 38.5
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 1.5e-31 141.7 217 35.9
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 2.6e-31 141.0 160 41.2
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 3.4e-31 140.6 220 35.0
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 9.8e-31 139.0 217 35.9
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 2.2e-30 137.9 216 36.1
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 2.2e-30 137.9 198 36.9
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 2.8e-30 137.5 160 40.0
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 4.8e-30 136.7 198 35.9
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 8.3e-30 136.0 220 35.0
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 1.4e-29 135.2 164 40.9
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 7.0e-29 132.9 220 34.5
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 9.1e-29 132.5 188 38.8
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 2.0e-28 131.3 185 40.0
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 3.5e-28 130.6 164 36.6
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 4.2e-26 123.6 223 32.3
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 2.8e-25 120.9 194 33.0
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 2.8e-25 120.9 188 36.7
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 6.1e-25 119.8 212 36.3
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 3.0e-24 117.5 201 32.8
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 5.2e-24 116.7 161 33.5
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 1.2e-23 115.5 171 47.4
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 1.9e-18 98.2 126 37.3
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 5.6e-18 96.7 117 41.0
CDE04G1227 Ceratophyllum demersum HOM05D007340 ORTHO05D008979 3.0e-16 90.9 105 42.9
ATR0582G031 Amborella trichopoda HOM05D007340 ORTHO05D008979 4.6e-12 77.0 88 42.0
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 9.5e-10 69.3 84 38.1
TAR623G1146 Trochodendron aralioides HOM05D005973 ORTHO05D007285 2.3e-08 64.7 165 23.0
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 3.1e-08 64.3 165 23.6
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 8.9e-08 62.8 174 25.9
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 3.4e-07 60.8 48 54.2
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 3.4e-07 60.8 48 54.2
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 5.8e-07 60.1 162 22.2
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 5.8e-07 60.1 155 24.5
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 7.5e-07 59.7 155 23.9
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 7.5e-07 59.7 165 22.4
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 9.8e-07 59.3 165 24.2
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 9.8e-07 59.3 189 22.8
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 3.7e-06 57.4 162 22.8
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 3.7e-06 57.4 155 23.9
arahy.Tifrunner.gnm1.ann1.9Z0TAG Arachis hypogaea HOM05D005973 ORTHO05D007285 4.9e-06 57.0 166 24.1
arahy.Tifrunner.gnm1.ann1.P50PF0 Arachis hypogaea HOM05D005973 ORTHO05D007285 4.9e-06 57.0 166 24.1


User provided reference genes

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