Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 0.0e+00 1746.9 909 100.0
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 0.0e+00 1645.6 909 93.7
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 0.0e+00 1635.5 909 94.8
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 0.0e+00 1607.8 951 90.0
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 0.0e+00 1495.7 936 84.3
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 0.0e+00 1199.9 994 68.2
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 0.0e+00 1146.7 968 67.4
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 0.0e+00 1114.0 971 65.5
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 2.3e-288 995.7 1000 58.3
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 2.3e-288 995.7 932 60.3
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 7.3e-287 990.7 935 60.6
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 1.5e-284 983.0 955 58.7
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.9e-280 968.4 953 58.2
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.1e-279 966.8 938 59.0
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 3.3e-279 965.3 933 58.7
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 4.3e-279 964.9 986 57.6
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 7.3e-279 964.1 931 59.3
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 6.2e-278 961.1 964 56.8
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.5e-276 956.4 935 59.0
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.4e-276 955.3 959 57.5
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 9.9e-276 953.7 931 59.0
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.3e-275 953.4 944 57.9
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 4.9e-275 951.4 933 59.7
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.2e-273 946.8 939 57.8
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 7.8e-273 944.1 947 58.1
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 3.9e-272 941.8 960 55.8
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.3e-270 936.8 884 58.9
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.3e-270 936.8 910 58.2
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.6e-270 936.4 999 54.9
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 7.6e-268 927.5 962 56.7
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.1e-265 919.5 1012 53.8
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 7.9e-265 917.5 946 55.7
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 3.9e-264 915.2 946 55.2
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.5e-263 913.3 943 56.3
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 5.6e-263 911.4 925 57.1
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 5.3e-261 904.8 976 54.6
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 3.4e-260 902.1 987 53.4
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.1e-258 897.1 953 55.1
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 1.9e-258 896.3 937 54.6
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 2.4e-258 896.0 976 53.7
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 3.2e-258 895.6 983 53.8
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.8e-256 889.8 992 53.4
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.1e-255 887.1 937 55.3
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 5.6e-255 884.8 945 54.0
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.3e-254 883.6 941 55.7
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 4.8e-254 881.7 738 63.4
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.4e-253 880.2 950 53.7
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 4.2e-250 868.6 974 51.2
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 7.1e-250 867.8 672 65.6
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 6.7e-248 861.3 970 52.9
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 6.7e-248 861.3 1002 50.0
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 2.5e-247 859.4 1002 50.2
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 4.3e-247 858.6 931 54.6
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 5.7e-247 858.2 883 57.3
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.3e-246 857.1 937 52.5
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.2e-246 856.3 994 52.1
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 2.8e-246 855.9 716 62.6
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 8.2e-246 854.4 1017 51.3
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.4e-245 853.6 981 50.8
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.1e-245 852.4 928 53.4
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 1.2e-244 850.5 757 61.8
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 3.4e-244 849.0 994 51.4
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 2.9e-243 845.9 939 53.6
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 2.1e-241 839.7 908 53.7
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 4.6e-241 838.6 902 53.2
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.7e-238 830.1 966 51.4
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 1.8e-237 826.6 870 53.6
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.1e-237 825.5 1074 46.2
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 3.4e-236 822.4 888 52.8
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 2.9e-235 819.3 971 50.1
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 8.5e-235 817.8 1015 48.1
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.4e-234 817.0 893 52.2
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 4.2e-234 815.5 945 51.7
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 9.4e-234 814.3 970 51.0
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 6.1e-233 811.6 986 50.1
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 3.0e-232 809.3 875 52.2
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 3.3e-231 805.8 913 51.5
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 7.4e-231 804.7 872 52.5
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 7.4e-231 804.7 908 52.0
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 6.3e-230 801.6 932 50.9
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.4e-229 799.7 990 48.7
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 5.3e-229 798.5 919 51.0
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.3e-227 793.9 951 49.2
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 2.2e-227 793.1 899 52.7
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 3.8e-227 792.3 984 48.5
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 8.5e-227 791.2 949 49.3
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.4e-226 790.4 946 50.1
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.9e-226 790.0 945 51.0
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 1.2e-225 787.3 672 60.9
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 2.1e-225 786.6 679 59.9
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.8e-224 783.5 950 49.6
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 2.6e-223 779.6 668 60.6
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 2.6e-223 779.6 724 57.9
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 9.7e-223 777.7 940 49.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 2.4e-221 773.1 885 50.8
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 2.0e-220 770.0 885 50.3
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.0e-219 767.7 935 49.7
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 1.5e-218 763.8 733 55.1
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 5.5e-218 761.9 885 50.1
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 9.4e-218 761.1 963 48.9
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 2.7e-217 759.6 662 58.6
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 4.7e-217 758.8 702 58.7
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 5.2e-216 755.4 910 49.5
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 8.8e-216 754.6 723 57.7
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 5.7e-215 751.9 904 49.1
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 6.3e-214 748.4 684 58.0
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 7.0e-205 718.4 945 49.0
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 8.6e-203 711.4 921 48.6
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.5e-199 700.7 930 46.3
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.8e-197 693.7 710 52.4
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 4.5e-196 689.1 738 52.2
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 2.1e-193 680.2 684 53.8
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 6.8e-192 675.2 675 52.9
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.1e-178 631.3 671 52.2
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.8e-177 626.7 757 48.6
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 1.5e-159 567.8 694 46.4
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 1.8e-152 544.3 623 48.3
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 2.5e-146 523.9 726 43.9
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 4.0e-136 490.0 708 45.9
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.6e-124 451.4 660 42.9
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.8e-107 394.8 308 61.7
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.5e-106 391.7 506 40.3
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 5.2e-99 366.7 479 38.8
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 5.2e-99 366.7 736 33.0
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 9.8e-90 335.9 488 38.3
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.3e-38 166.0 115 69.6
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 5.6e-37 160.6 115 67.8
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.1e-29 136.3 404 27.5
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.4e-24 119.4 189 39.7
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.7e-22 110.5 146 47.9
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.9e-19 100.5 329 35.6
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 2.1e-15 89.0 151 38.4
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 2.7e-15 88.6 151 38.4
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.9e-13 82.4 101 45.5
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 4.8e-12 77.8 80 57.5
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 8.2e-12 77.0 101 44.6
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 1.2e-07 63.2 92 46.7


User provided reference genes

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