Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.6e-211 738.0 384 100.0
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.4e-207 724.2 384 98.2
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.0e-205 718.4 402 94.5
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 6.4e-200 700.7 384 96.6
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 5.4e-191 671.0 384 91.9
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.6e-182 641.3 431 82.4
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.7e-173 612.8 376 85.6
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 6.2e-171 604.4 375 84.8
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 4.8e-155 551.6 360 78.9
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.8e-154 549.7 342 82.2
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 7.6e-153 544.3 361 77.8
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 3.8e-152 542.0 342 80.4
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 8.4e-152 540.8 342 79.5
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.2e-151 538.9 342 81.0
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 2.1e-150 536.2 342 79.5
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.8e-149 533.1 352 77.8
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 5.1e-149 531.6 345 80.0
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 8.7e-149 530.8 360 77.2
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.1e-148 530.4 361 75.6
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 1.5e-148 530.0 348 79.3
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 3.3e-148 528.9 361 75.1
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 4.3e-148 528.5 385 74.0
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 4.3e-148 528.5 361 74.8
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 7.4e-148 527.7 337 79.5
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 9.7e-148 527.3 346 77.2
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 2.2e-147 526.2 364 76.1
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 2.2e-147 526.2 342 77.5
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 3.7e-147 525.4 354 77.4
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 3.7e-147 525.4 343 77.0
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 6.3e-147 524.6 361 76.2
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 8.2e-147 524.2 335 80.3
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 8.2e-147 524.2 352 77.8
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 8.2e-147 524.2 320 84.1
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 5.3e-146 521.5 345 78.0
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 6.9e-146 521.2 345 78.3
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 2.0e-145 519.6 421 67.5
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 2.6e-145 519.2 384 71.1
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 3.4e-145 518.8 377 72.1
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.3e-144 516.9 342 77.8
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 1.3e-144 516.9 355 76.9
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 2.2e-144 516.2 345 77.1
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.4e-143 513.5 375 72.8
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.4e-143 513.5 354 76.0
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.4e-143 513.5 342 76.9
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 3.2e-143 512.3 342 77.2
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 4.2e-143 511.9 376 72.6
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 4.2e-143 511.9 342 77.2
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 4.2e-143 511.9 377 71.1
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.5e-143 511.5 342 77.5
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 9.4e-143 510.8 353 74.8
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.6e-142 510.0 324 79.3
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 2.1e-142 509.6 342 77.2
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.7e-142 509.2 380 70.0
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 4.6e-142 508.4 358 75.4
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 4.6e-142 508.4 354 76.0
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 7.9e-142 507.7 362 73.8
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 7.9e-142 507.7 353 75.4
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 1.4e-141 506.9 356 75.0
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 3.0e-141 505.8 343 76.7
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 1.5e-140 503.4 359 74.9
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.5e-140 503.4 318 82.1
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 2.0e-140 503.1 354 73.7
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.3e-140 502.3 353 74.8
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 3.3e-140 502.3 324 79.6
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 4.3e-140 501.9 359 74.7
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 5.7e-140 501.5 356 74.2
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 5.7e-140 501.5 342 76.6
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 7.4e-140 501.1 358 74.3
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 9.7e-140 500.7 359 74.7
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 9.7e-140 500.7 359 74.7
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 9.7e-140 500.7 336 78.3
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 2.8e-139 499.2 318 81.4
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 6.3e-139 498.0 318 79.9
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.8e-138 496.5 322 78.6
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 7.7e-137 491.1 382 68.3
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 1.9e-135 486.5 318 78.3
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 8.8e-133 477.6 357 68.9
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 8.8e-133 477.6 361 69.5
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.7e-131 472.2 309 78.0
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 3.7e-131 472.2 342 72.8
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 3.7e-131 472.2 323 73.4
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 4.8e-131 471.9 328 75.6
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.4e-130 469.5 425 62.6
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 9.1e-130 467.6 319 76.2
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.5e-127 460.3 296 80.7
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 1.9e-127 459.9 376 68.6
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 7.2e-127 458.0 359 71.0
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 9.4e-127 457.6 337 72.1
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 2.1e-126 456.4 337 71.8
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 2.7e-126 456.1 294 80.6
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 2.8e-123 446.0 320 70.6
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 4.5e-121 438.7 289 76.8
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 7.7e-121 438.0 319 71.8
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 8.5e-120 434.5 287 77.7
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.6e-118 430.3 337 68.8
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 6.3e-115 418.3 351 67.0
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 5.4e-114 415.2 385 59.5
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 7.0e-114 414.8 394 59.1
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 5.0e-112 408.7 320 65.9
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 3.4e-108 396.0 340 61.5
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.8e-107 392.9 249 82.7
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 2.0e-105 386.7 374 57.8
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 6.8e-101 371.7 262 71.4
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 3.5e-97 359.4 228 79.4
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.3e-93 346.7 239 73.2
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 3.4e-84 316.2 310 56.5
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 5.4e-82 308.9 310 54.2
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 8.6e-80 301.6 319 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.8e-78 296.6 237 65.8
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.1e-77 294.7 187 80.2
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 6.8e-77 292.0 192 78.1
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 4.9e-75 285.8 234 66.2
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 1.7e-72 277.3 234 61.5
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 4.9e-67 259.2 167 80.8
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 3.0e-64 250.0 352 45.7
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.0e-61 238.4 285 49.5
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 7.9e-57 225.3 158 72.2
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 6.9e-53 212.2 160 70.6
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 2.4e-50 203.8 112 87.5
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 6.7e-48 195.7 151 67.5
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 4.9e-43 179.5 249 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 9.3e-42 175.3 161 59.0
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 4.5e-36 156.4 110 70.0
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 6.5e-35 152.5 287 34.8
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 8.5e-35 152.1 259 39.4
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.1e-33 147.5 272 37.9
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 4.8e-30 136.3 243 41.6
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 6.3e-30 136.0 85 75.3
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 4.2e-26 123.2 101 67.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 5.7e-23 112.8 81 71.6
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.3e-22 111.7 75 68.0
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.2e-19 100.9 108 54.6
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.5e-18 96.3 59 86.4
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 9.4e-18 95.5 56 78.6
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.2e-17 95.1 113 48.7
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 6.7e-16 89.4 88 60.2
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 4.4e-15 86.7 67 70.1
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.4e-13 80.9 69 58.0
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 5.9e-12 76.3 55 67.3
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.3e-11 75.1 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.1e-10 72.0 62 59.7
DCAR_023607 Daucus carota HOM05D005313 ORTHO05D006317 6.3e-06 56.2 58 55.2


User provided reference genes

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