Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2465 Fragaria x ananassa HOM05D000108 ORTHO05D035548 9.6e-36 152.9 74 100.0
FvH4_4g36940 Fragaria vesca HOM05D000108 ORTHO05D035548 3.8e-32 141.0 71 97.2
FAN12G1933 Fragaria x ananassa HOM05D000108 ORTHO05D035548 6.6e-21 103.6 52 98.1
FAN07G0725 Fragaria x ananassa HOM05D000108 ORTHO05D210442 9.6e-12 73.2 50 72.0
vmacro07421 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 1.6e-06 55.8 37 70.3
vmacro07426 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 1.6e-06 55.8 37 70.3
SalBow3G2412 Salvia bowleyana HOM05D000108 ORTHO05D001149 2.1e-06 55.5 50 54.0
vmacro03137 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 2.7e-06 55.1 34 73.5
Aa31LG4G15070 Aethionema arabicum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Aa31LG5G7600 Aethionema arabicum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
ATR0594G216 Amborella trichopoda HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
ATR1152G079 Amborella trichopoda HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
AL4G23120 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
AL5G24530 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
AT2G28620 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
AT3G45850 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
BcaB05g23477 Brassica carinata HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
BcaB06g28234 Brassica carinata HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
BcaC09g49719 Brassica carinata HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
A01p26440 Brassica napus HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
A04p21690 Brassica napus HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
C01p33640 Brassica napus HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
C04p57810 Brassica napus HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
BolC1t03310H Brassica oleracea HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
BolC4t27300H Brassica oleracea HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
BraA01t02568Z Brassica rapa HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
BraA04t17733Z Brassica rapa HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
CANSAT54G1698 Cannabis sativa HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Carub.0004s0959 Capsella rubella HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Carub.0005s1169 Capsella rubella HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
CAN.G84.2 Capsicum annuum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
CARHR121650 Cardamine hirsuta HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
CARHR154150 Cardamine hirsuta HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
CiPaw.13G102700 Carya illinoinensis HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Cc01_g12000 Coffea canephora HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Duzib170G0496 Durio zibethinus HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Eucgr.B02433 Eucalyptus grandis HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Thhalv10002384m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Thhalv10016147m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
FvH4_3g34440 Fragaria vesca HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
FAN11G1183 Fragaria x ananassa HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
FAN16G0704 Fragaria x ananassa HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
FAN21G0560 Fragaria x ananassa HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
FAN25G2360 Fragaria x ananassa HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
MBI14_g42160_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Nitab4.5_0002380g0100 Nicotiana tabacum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Nitab4.5_0003784g0020 Nicotiana tabacum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Oeu040262.1 Olea europaea HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Oeu041005.1 Olea europaea HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Oeu062312.1 Olea europaea HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Peaxi162Scf00072g00021 Petunia axillaris HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Rhsim13G0089400 Rhododendron simsii HOM05D000108 ORTHO05D001149 3.5e-06 54.7 34 70.6
SalBow3G0765 Salvia bowleyana HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Sp4g11450 Schrenkiella parvula HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Sp5g15680 Schrenkiella parvula HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Sc12g0001870 Simmondsia chinensis HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Sc21g0005340 Simmondsia chinensis HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Solyc06g075580.4 Solanum lycopersicum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Solyc11g072820.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Sopen06g031970 Solanum pennellii HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Sopen11g030490 Solanum pennellii HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
PGSC0003DMG400015544 Solanum tuberosum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
PGSC0003DMG400030391 Solanum tuberosum HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
THA.LOC104799469 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
THA.LOC104826348 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 3.5e-06 54.7 33 75.8
Atru.chr3.3778 Acer truncatum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Actinidia07086 Actinidia chinensis HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Aqoxy4G03111 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
arahy.Tifrunner.gnm1.ann1.2070QL Arachis hypogaea HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
arahy.Tifrunner.gnm1.ann1.7B48AK Arachis hypogaea HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
arahy.Tifrunner.gnm1.ann1.QN0DU3 Arachis hypogaea HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
MSTRG.17848 Avicennia marina HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
CAN.G394.9 Capsicum annuum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Cpa.g.sc139.8 Carica papaya HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Cfa011412 Carpinus fangiana HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Ca_01363_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
ClCG03G001810 Citrullus lanatus HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Ciclev10027728m.g Citrus clementina HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
COL.COLO4_18411 Corchorus olitorius HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
MELO3C020688.2 Cucumis melo HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
CsaV3_1G033760 Cucumis sativus L. HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
DCAR_006020 Daucus carota HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Duzib150G0072 Durio zibethinus HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Duzib168G1926 Durio zibethinus HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Glyma.13G330600 Glycine max HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Glyma.15G043400 Glycine max HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Gohir.A03G036500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Gohir.A05G099500 Gossypium hirsutum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Gohir.D03G131700 Gossypium hirsutum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Gohir.D05G099400 Gossypium hirsutum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Gorai.003G138600 Gossypium raimondii HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Gorai.009G103300 Gossypium raimondii HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Lj3g0021793 Lotus japonicus HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Lalb_Chr14g0374921 Lupinus albus HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Lalb_Chr19g0137571 Lupinus albus HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
MD11G1118200 Malus domestica HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Manes.04G028300 Manihot esculenta HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Nn2g10569 Nelumbo nucifera HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Nn2g12816 Nelumbo nucifera HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
PSO339G0953 Papaver somniferum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
PSO384G2763 Papaver somniferum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Phvul.011G070000 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Psat5g281840 Pisum sativum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Potri.001G233700 Populus trichocarpa HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Prupe.6G088500 Prunus persica HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
PGR119G0104 Punica granatum HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
QL01p035162 Quercus lobata HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Sabra16G0140000 Salix brachista HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
SalBow3G2091 Salvia bowleyana HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
SHI05982 Sapria himalayana HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Sed0002914 Sechium edule HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Thecc.09G332700 Theobroma cacao HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
TPR.G11605 Trifolium pratense HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
TWI31G0805 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
TWI79G1415 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
TAR633G1860 Trochodendron aralioides HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
unitig_0.g1033 Utricularia gibba HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
VMungo1127G1903 Vigna mungo HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
GSVIVG01025071001 Vitis vinifera HOM05D000108 ORTHO05D001149 4.6e-06 54.3 33 72.7
Migut.N02645 Erythranthe guttata HOM05D000108 ORTHO05D001149 6.0e-06 53.9 32 78.1
PSO339G0093 Papaver somniferum HOM05D000108 ORTHO05D001149 6.0e-06 53.9 39 64.1
PSO384G1988 Papaver somniferum HOM05D000108 ORTHO05D001149 6.0e-06 53.9 39 64.1
RcHm_v2.0_Chr5g0062081 Rosa chinensis HOM05D000108 ORTHO05D001149 6.0e-06 53.9 32 78.1
Aa31LG5G22850 Aethionema arabicum HOM05D000108 ORTHO05D001149 7.9e-06 53.5 35 71.4
CAN.G608.29 Capsicum annuum HOM05D000108 ORTHO05D001149 7.9e-06 53.5 34 67.6
ECA248G3979 Erigeron canadensis HOM05D000108 ORTHO05D001149 7.9e-06 53.5 32 75.0
Lsat_1_v5_gn_1_55921 Lactuca sativa HOM05D000108 ORTHO05D001149 7.9e-06 53.5 32 75.0
Lj1A178T40 Lonicera japonica HOM05D000108 ORTHO05D001149 7.9e-06 53.5 33 72.7
Nitab4.5_0000643g0230 Nicotiana tabacum HOM05D000108 ORTHO05D001149 7.9e-06 53.5 34 67.6
Nitab4.5_0006252g0050 Nicotiana tabacum HOM05D000108 ORTHO05D001149 7.9e-06 53.5 34 67.6
Os05g0117798 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001149 7.9e-06 53.5 32 75.0
Peaxi162Scf00597g00827 Petunia axillaris HOM05D000108 ORTHO05D001149 7.9e-06 53.5 34 67.6
Solyc09g007030.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 7.9e-06 53.5 34 67.6
Sopen00g008700 Solanum pennellii HOM05D000108 ORTHO05D001149 7.9e-06 53.5 34 67.6
Sopen09g001890 Solanum pennellii HOM05D000108 ORTHO05D001149 7.9e-06 53.5 34 67.6
PGSC0003DMG400002026 Solanum tuberosum HOM05D000108 ORTHO05D001149 7.9e-06 53.5 34 67.6
THA.LOC104815761 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 7.9e-06 53.5 33 72.7
Zm00001eb265660 Zea mays HOM05D000108 ORTHO05D001149 7.9e-06 53.5 32 75.0


User provided reference genes

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