Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 0.0e+00 1763.4 885 100.0
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 0.0e+00 1595.5 833 97.4
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 0.0e+00 1430.2 885 84.7
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 0.0e+00 1403.3 800 90.4
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 0.0e+00 1176.8 794 78.2
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 9.8e-212 741.1 802 55.5
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 3.7e-203 712.6 825 52.4
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 1.1e-159 568.2 822 45.1
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 2.5e-159 567.0 822 45.3
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 4.6e-145 519.6 823 43.3
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 6.5e-123 446.0 805 40.2
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 2.1e-113 414.5 811 38.3
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 2.7e-113 414.1 584 46.9
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 4.0e-112 410.2 809 39.2
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 1.2e-111 408.7 798 38.7
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 2.0e-111 407.9 805 38.8
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 4.9e-110 403.3 810 38.3
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 7.0e-109 399.4 905 34.9
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 6.6e-107 392.9 809 38.6
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 2.8e-105 387.5 807 38.0
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 3.4e-103 380.6 792 37.0
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 4.4e-103 380.2 792 37.0
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 4.6e-100 370.2 791 36.2
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 1.3e-99 368.6 802 35.4
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 3.0e-99 367.5 864 35.1
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 3.9e-99 367.1 800 35.5
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 4.3e-98 363.6 811 35.6
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 9.5e-98 362.5 830 37.6
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 6.8e-96 356.3 797 36.0
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 4.6e-92 343.6 812 34.4
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 5.0e-91 340.1 870 34.1
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 2.3e-88 331.3 800 35.9
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 4.4e-87 327.0 794 35.5
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 7.5e-87 326.2 730 36.4
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 8.3e-86 322.8 698 35.5
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 2.4e-85 321.2 773 34.2
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 2.7e-84 317.8 932 32.0
Glyma.20G076700 Glycine max HOM05D005405 ORTHO05D006333 7.8e-84 316.2 823 34.6
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 1.7e-83 315.1 823 34.0
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 1.9e-82 311.6 677 35.9
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 8.1e-81 306.2 807 33.0
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 8.1e-81 306.2 856 32.4
Psat6g048040 Pisum sativum HOM05D005405 ORTHO05D006333 3.1e-80 304.3 730 33.4
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 5.2e-80 303.5 734 33.4
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 6.8e-80 303.1 793 33.2
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 1.2e-79 302.4 795 33.6
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 1.2e-79 302.4 788 33.8
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 2.4e-77 294.7 804 34.0
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 2.1e-76 291.6 828 32.4
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 5.1e-75 287.0 821 32.5
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 8.6e-75 286.2 699 33.2
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 7.3e-74 283.1 822 32.7
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 2.8e-73 281.2 858 30.8
Gohir.A10G121500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 6.2e-73 280.0 878 31.1
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.8e-72 278.5 858 30.7
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 4.4e-71 273.9 872 31.1
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 5.8e-71 273.5 716 33.5
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 7.6e-71 273.1 806 31.0
Gorai.006G220000 Gossypium raimondii HOM05D005405 ORTHO05D006333 2.4e-69 268.1 834 31.8
VMungo0720G2049 Vigna mungo HOM05D005405 ORTHO05D006333 5.4e-69 266.9 741 32.0
Gohir.D09G196500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.2e-68 265.8 834 31.5
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 3.5e-68 264.2 731 33.4
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 4.6e-68 263.8 739 33.4
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 7.8e-68 263.1 583 35.7
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 7.8e-68 263.1 811 32.2
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 8.7e-67 259.6 745 32.2
Phvul.007G236500 Phaseolus vulgaris HOM05D005405 ORTHO05D006333 1.9e-66 258.5 722 33.0
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 4.3e-66 257.3 811 32.1
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 8.1e-65 253.1 661 33.1
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 1.4e-64 252.3 810 31.1
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 1.8e-64 251.9 798 28.7
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 1.2e-63 249.2 421 41.1
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 1.5e-63 248.8 813 31.1
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 1.5e-63 248.8 825 29.9
PGSC0003DMG400029647 Solanum tuberosum HOM05D005405 ORTHO05D006333 3.4e-63 247.7 542 34.9
Ciclev10004706m.g Citrus clementina HOM05D005405 ORTHO05D006333 4.5e-63 247.3 625 33.3
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-58 232.6 716 31.4
RhsimUnG0181000 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.2e-55 222.6 664 32.1
RhsimUnG0135700 Rhododendron simsii HOM05D005405 ORTHO05D006333 2.6e-55 221.5 694 31.8
CSS0015206 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.3e-54 219.2 629 32.1
CSS0036421 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.7e-54 218.8 630 32.2
THA.LOC104801040 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 2.7e-52 211.5 578 33.2
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 1.0e-51 209.5 770 31.2
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 1.9e-50 205.3 808 29.5
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 1.8e-48 198.7 554 31.9
AUR62025677 Chenopodium quinoa HOM05D005405 ORTHO05D006333 2.4e-48 198.4 599 30.7
BolC5t29078H Brassica oleracea HOM05D005405 ORTHO05D006333 1.5e-47 195.7 554 30.7
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 2.6e-47 194.9 604 30.0
C05p02970 Brassica napus HOM05D005405 ORTHO05D006333 5.8e-47 193.7 609 29.9
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 7.6e-47 193.4 803 28.6
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 3.8e-46 191.0 540 30.6
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 3.8e-46 191.0 546 32.2
BcaB02g06900 Brassica carinata HOM05D005405 ORTHO05D006333 2.5e-45 188.3 544 31.6
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 2.5e-45 188.3 548 33.0
CSS0016720 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 7.1e-45 186.8 169 59.8
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 2.3e-43 181.8 721 29.5
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 2.3e-43 181.8 228 49.1
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 3.0e-43 181.4 801 27.0
Carub.0001s0404 Capsella rubella HOM05D005405 ORTHO05D006333 5.1e-43 180.6 722 28.4
AL1G14510 Arabidopsis lyrata HOM05D005405 ORTHO05D006333 1.1e-42 179.5 544 31.4
Aa31LG1G20100 Aethionema arabicum HOM05D005405 ORTHO05D006333 1.5e-42 179.1 840 27.3
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 1.5e-42 179.1 542 31.7
GSVIVG01029065001 Vitis vinifera HOM05D005405 ORTHO05D006333 2.5e-42 178.3 425 33.4
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 4.3e-42 177.6 778 27.4
A10p03220 Brassica napus HOM05D005405 ORTHO05D006333 1.6e-41 175.6 607 28.7
CARHR004180 Cardamine hirsuta HOM05D005405 ORTHO05D006333 3.7e-41 174.5 548 30.1
SGA_v2.0_scaffold2G00820 Striga asiatica HOM05D005405 ORTHO05D006333 9.0e-40 169.9 425 33.9
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 1.2e-39 169.5 605 29.6
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 2.0e-39 168.7 272 44.9
Ah.08g218040 Amaranthus hybridus HOM05D005405 ORTHO05D006333 7.6e-39 166.8 787 27.8
HPP92_022603 Vanilla planifolia HOM05D006987 ORTHO05D000525 3.6e-36 157.9 530 31.5
Ciclev10006228m.g Citrus clementina HOM05D005405 ORTHO05D006333 1.6e-33 149.1 104 72.1
Zm00001eb426420 Zea mays HOM05D005405 ORTHO05D006333 1.6e-33 149.1 514 27.6
Hund05655 Selenicereus undatus HOM05D005405 ORTHO05D006333 2.8e-33 148.3 493 29.6
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 1.1e-32 146.4 657 27.2
Os04g0511600 Oryza sativa ssp. japonica HOM05D005405 ORTHO05D006333 2.2e-30 138.7 535 30.1
CDE02G4244 Ceratophyllum demersum HOM05D005405 ORTHO05D006333 1.4e-29 136.0 172 47.1
SEGI_12739 Sequoiadendron giganteum HOM05D005405 ORTHO05D006333 1.5e-26 125.9 374 31.6
ECA248G0186 Erigeron canadensis HOM05D005405 ORTHO05D006333 2.4e-24 118.6 550 25.8
Cpa.g.sc59.100 Carica papaya HOM05D005405 ORTHO05D006333 5.0e-22 110.9 344 31.4
FAN22G0050 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.9e-21 109.0 56 96.4
Zm00001eb157090 Zea mays HOM05D029717 ORTHO05D006333 3.6e-20 104.8 267 33.3
Sc13g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 7.9e-20 103.6 463 26.1
Sc22g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 1.0e-19 103.2 463 26.3
Mapoly0116s0016 Marchantia polymorpha HOM05D005405 ORTHO05D006333 6.7e-19 100.5 247 34.0
Rhsim02G0140000 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.5e-18 99.4 583 25.7
Pp3c2_17560 Physcomitrium patens HOM05D005405 ORTHO05D006333 7.4e-18 97.1 262 33.2
HPP92_007064 Vanilla planifolia HOM05D005405 ORTHO05D006333 4.8e-17 94.4 231 30.7
CSS0040970 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 9.1e-16 90.1 135 45.2
SMO169G0140 Selaginella moellendorffii HOM05D005405 ORTHO05D006333 8.5e-14 83.6 226 35.0
Zm00001eb360110 Zea mays HOM05D029717 ORTHO05D006333 1.1e-13 83.2 247 32.8
CSS0020692 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.5e-13 82.8 57 70.2
CSS0029812 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.5e-13 82.8 57 70.2
Lj3C583T4 Lonicera japonica HOM05D005405 ORTHO05D006333 1.9e-13 82.4 463 26.1
GSVIVG01029064001 Vitis vinifera HOM05D005405 ORTHO05D006333 6.3e-09 67.4 87 49.4
Cre01.g051700 Chlamydomonas reinhardtii HOM05D005405 ORTHO05D003830 1.1e-08 66.6 88 37.5
PRCOL_00004693 Prasinoderma coloniale HOM05D005405 ORTHO05D006333 4.1e-08 64.7 71 50.7
Nn1g05672 Nelumbo nucifera HOM05D005405 ORTHO05D006333 7.0e-08 63.9 35 74.3
BcaC07g39879 Brassica carinata HOM05D003544 ORTHO05D003830 5.0e-06 57.8 115 33.0
C08p30840 Brassica napus HOM05D003544 ORTHO05D003830 5.0e-06 57.8 115 33.0


User provided reference genes

Program Settings