Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.2e-106 389.8 196 100.0
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.8e-97 357.5 239 80.3
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.5e-96 356.3 240 79.6
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.0e-96 355.9 240 79.2
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 9.8e-96 353.6 240 80.0
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 5.0e-92 341.3 238 76.9
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 8.6e-76 287.3 239 65.7
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 2.1e-74 282.7 239 65.7
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 4.1e-70 268.5 242 64.5
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.1e-65 253.8 241 60.2
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 3.4e-64 248.8 239 59.4
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 9.9e-64 247.3 239 58.6
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 2.4e-62 242.7 246 55.7
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 7.1e-62 241.1 245 55.5
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 1.2e-61 240.4 240 56.7
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.3e-60 236.9 240 55.8
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 6.6e-60 234.6 242 57.9
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 7.3e-59 231.1 240 52.9
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.2e-58 230.3 239 57.7
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.6e-58 229.9 238 55.5
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 2.8e-58 229.2 231 55.4
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 3.1e-57 225.7 238 52.5
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 5.2e-57 224.9 240 55.0
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 6.8e-57 224.6 239 55.2
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 9.9e-56 220.7 239 55.6
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 2.9e-55 219.2 241 54.8
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 2.9e-55 219.2 237 52.7
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.1e-54 217.2 255 53.3
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.4e-54 216.9 245 52.7
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 3.2e-54 215.7 244 52.5
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 3.2e-54 215.7 239 51.5
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.6e-53 213.4 220 58.2
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 4.6e-53 211.8 239 53.1
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 6.0e-53 211.5 257 52.9
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 2.3e-52 209.5 235 54.0
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 2.3e-52 209.5 250 52.0
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 6.6e-52 208.0 240 49.6
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 8.7e-52 207.6 244 52.5
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.5e-51 206.8 252 50.4
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.3e-51 205.7 244 50.4
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 3.3e-51 205.7 229 54.6
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 7.3e-51 204.5 239 49.8
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 9.6e-51 204.1 256 48.0
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.6e-50 203.4 252 49.6
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 2.1e-50 203.0 253 49.4
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.8e-50 202.6 230 50.0
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.7e-50 201.8 240 49.2
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 6.2e-50 201.4 235 51.9
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.1e-49 200.7 260 50.0
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.4e-49 200.3 238 51.7
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 2.4e-49 199.5 251 48.6
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 6.9e-49 198.0 244 52.0
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 4.4e-48 195.3 247 49.8
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 9.9e-48 194.1 249 49.4
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 2.2e-47 193.0 247 49.4
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 3.8e-47 192.2 270 49.3
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 2.4e-46 189.5 243 48.6
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 7.1e-46 188.0 234 48.3
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 7.1e-46 188.0 235 47.2
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 1.6e-45 186.8 237 46.8
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 2.7e-45 186.0 240 45.8
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 7.8e-45 184.5 238 47.9
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.0e-44 184.1 279 46.2
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.3e-44 183.7 245 48.2
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 2.3e-44 183.0 238 46.2
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 3.0e-44 182.6 247 50.2
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 8.7e-44 181.0 238 45.0
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 8.7e-44 181.0 238 45.8
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 8.7e-44 181.0 223 46.2
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 1.1e-43 180.6 208 54.3
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.1e-43 180.6 238 45.8
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.6e-42 176.8 238 48.7
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.6e-42 176.8 236 47.0
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 4.8e-42 175.3 240 47.5
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.4e-41 173.7 155 61.9
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 6.9e-41 171.4 255 44.7
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.6e-40 169.5 260 44.6
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 3.4e-40 169.1 166 57.2
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.3e-39 167.2 268 41.8
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 4.9e-39 165.2 283 43.1
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 2.4e-38 162.9 261 43.3
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 3.2e-38 162.5 231 46.3
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.7e-37 159.5 240 43.3
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 6.7e-36 154.8 232 41.8
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 8.7e-36 154.5 248 43.1
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 7.4e-35 151.4 232 43.5
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 9.6e-35 151.0 215 45.6
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.3e-34 150.6 254 42.1
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 2.8e-34 149.4 245 43.7
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 6.2e-34 148.3 225 44.0
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 8.1e-34 147.9 242 43.8
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-33 147.1 219 42.9
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.8e-33 146.7 226 46.0
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 1.2e-32 144.1 238 42.0
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 1.5e-32 143.7 222 43.2
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.5e-32 143.7 223 43.5
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.5e-32 143.7 223 43.5
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.5e-32 143.7 238 42.0
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.0e-32 143.3 141 55.3
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 2.6e-32 142.9 231 41.6
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 3.4e-32 142.5 258 40.3
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.4e-32 142.5 201 47.3
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 3.4e-32 142.5 164 48.2
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 3.4e-32 142.5 262 42.0
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 4.5e-32 142.1 219 42.9
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 4.5e-32 142.1 261 40.6
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 7.6e-32 141.4 250 40.0
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 7.6e-32 141.4 256 40.6
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 4.9e-31 138.7 234 41.5
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.4e-30 137.1 225 44.0
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.5e-30 136.3 253 39.9
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.2e-29 134.0 239 41.0
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 3.5e-29 132.5 233 41.6
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-27 126.7 224 42.9
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 2.5e-27 126.3 225 42.7
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 4.3e-27 125.6 224 40.2
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.3e-26 124.0 226 39.8
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 2.8e-26 122.9 259 37.5
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-25 120.6 228 40.4
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.4e-25 120.6 234 40.2
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 3.1e-25 119.4 245 40.0
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 5.3e-25 118.6 238 37.4
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 5.3e-25 118.6 265 36.6
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 5.3e-25 118.6 265 36.6
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 4.5e-24 115.5 267 36.0
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 4.5e-24 115.5 267 36.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 7.6e-24 114.8 202 42.6
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 8.4e-23 111.3 262 37.4
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.2e-22 109.4 266 37.2
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.2e-21 107.5 243 36.6
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.3e-20 103.2 106 54.7
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.9e-20 102.4 243 35.8
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 5.1e-20 102.1 163 39.9
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 9.7e-19 97.8 98 54.1
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 2.8e-18 96.3 255 34.9
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 3.7e-18 95.9 165 42.4
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 3.7e-18 95.9 208 35.6
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 8.2e-18 94.7 154 42.2
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 1.4e-17 94.0 175 37.7
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.6e-13 80.5 242 33.1
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 2.5e-11 73.2 149 35.6
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.0e-07 61.2 51 60.8
THA.LOC104826982 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 1.0e-07 61.2 108 37.0
THA.LOC104819222 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 2.9e-07 59.7 109 38.5
Psat4g087040 Pisum sativum HOM05D002458 ORTHO05D002603 1.1e-06 57.8 99 40.4
THA.LOC104821274 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 1.4e-06 57.4 96 38.5
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 2.5e-06 56.6 131 38.2
Aa31LG1G15350 Aethionema arabicum HOM05D002458 ORTHO05D002603 7.2e-06 55.1 120 35.8
MELO3C020898.2 Cucumis melo HOM05D002458 ORTHO05D002603 9.4e-06 54.7 91 36.3
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 9.4e-06 54.7 155 31.0


User provided reference genes

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