Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2328 Fragaria x ananassa HOM05D002325 ORTHO05D000336 2.0e-62 242.3 123 100.0
FvH4_4g19960 Fragaria vesca HOM05D002325 ORTHO05D000336 4.6e-27 124.8 91 75.8
FAN12G2394 Fragaria x ananassa HOM05D002325 ORTHO05D000336 4.6e-27 124.8 91 75.8
FAN28G1066 Fragaria x ananassa HOM05D002325 ORTHO05D000336 1.0e-26 123.6 85 80.0
FAN02G1137 Fragaria x ananassa HOM05D002325 ORTHO05D000336 8.7e-26 120.6 119 63.9
FAN13G1024 Fragaria x ananassa HOM05D002325 ORTHO05D000336 1.2e-14 83.6 63 73.0
FAN14G2688 Fragaria x ananassa HOM05D002325 ORTHO05D000336 1.9e-12 76.3 115 47.0
RcHm_v2.0_Chr7g0243391 Rosa chinensis HOM05D002325 ORTHO05D000336 2.5e-12 75.9 55 74.5
FvH4_5g36840 Fragaria vesca HOM05D002325 ORTHO05D000336 5.5e-12 74.7 55 72.7
FAN18G1968 Fragaria x ananassa HOM05D002325 ORTHO05D000336 5.5e-12 74.7 55 72.7
COL.COLO4_12030 Corchorus olitorius HOM05D002325 ORTHO05D000336 6.7e-10 67.8 56 60.7
Dinv44793 Davidia involucrata HOM05D002325 ORTHO05D000336 6.7e-10 67.8 55 63.6
MD15G1372500 Malus domestica HOM05D002325 ORTHO05D000336 3.3e-09 65.5 55 61.8
Prupe.1G521100 Prunus persica HOM05D002325 ORTHO05D000336 5.7e-09 64.7 55 61.8
FAN08G3664 Fragaria x ananassa HOM05D002325 ORTHO05D000336 7.4e-09 64.3 50 68.0
Gohir.D05G227400 Gossypium hirsutum HOM05D002325 ORTHO05D000336 9.7e-09 63.9 56 58.9
Gorai.009G235100 Gossypium raimondii HOM05D002325 ORTHO05D000336 9.7e-09 63.9 56 58.9
MD08G1186500 Malus domestica HOM05D002325 ORTHO05D000336 9.7e-09 63.9 53 62.3
Gohir.A05G224900 Gossypium hirsutum HOM05D002325 ORTHO05D000336 1.3e-08 63.5 56 58.9
QL12p037348 Quercus lobata HOM05D002325 ORTHO05D000336 1.7e-08 63.2 56 58.9
Ciclev10001853m.g Citrus clementina HOM05D002325 ORTHO05D000336 2.8e-08 62.4 64 53.1
Haze_22293 Corylus avellana HOM05D002325 ORTHO05D000336 3.7e-08 62.0 56 58.9
COL.COLO4_27274 Corchorus olitorius HOM05D002325 ORTHO05D000336 4.8e-08 61.6 69 47.8
TAR625G1257 Trochodendron aralioides HOM05D002325 ORTHO05D000336 4.8e-08 61.6 58 55.2
Dinv13214 Davidia involucrata HOM05D002325 ORTHO05D000336 6.3e-08 61.2 68 50.0
FvH4_5g36830 Fragaria vesca HOM05D002325 ORTHO05D000336 6.3e-08 61.2 55 60.0
FAN13G2040 Fragaria x ananassa HOM05D002325 ORTHO05D000336 6.3e-08 61.2 55 60.0
FAN18G3616 Fragaria x ananassa HOM05D002325 ORTHO05D000336 6.3e-08 61.2 55 60.0
EL10Ac6g15135 Beta vulgaris HOM05D002325 ORTHO05D000336 8.2e-08 60.8 61 52.5
FAN04G3243 Fragaria x ananassa HOM05D002325 ORTHO05D000336 8.2e-08 60.8 55 60.0
Gohir.A11G051400 Gossypium hirsutum HOM05D002325 ORTHO05D000336 8.2e-08 60.8 74 45.9
Gohir.D11G054800 Gossypium hirsutum HOM05D002325 ORTHO05D000336 8.2e-08 60.8 74 45.9
Gorai.007G060100 Gossypium raimondii HOM05D002325 ORTHO05D000336 8.2e-08 60.8 74 45.9
Ca_15257_v3 Cicer arietinum L. HOM05D002325 ORTHO05D000336 1.1e-07 60.5 58 55.2
Thecc.01G098000 Theobroma cacao HOM05D002325 ORTHO05D000336 1.1e-07 60.5 69 46.4
Thecc.08G104100 Theobroma cacao HOM05D002325 ORTHO05D000336 1.1e-07 60.5 56 55.4
TAR381G0845 Trochodendron aralioides HOM05D002325 ORTHO05D000336 1.4e-07 60.1 68 48.5
Prupe.6G190900 Prunus persica HOM05D002325 ORTHO05D000336 1.8e-07 59.7 56 53.6
Nitab4.5_0000743g0140 Nicotiana tabacum HOM05D002325 ORTHO05D000336 2.4e-07 59.3 77 45.5
Sabra05G0123000 Salix brachista HOM05D002325 ORTHO05D000336 2.4e-07 59.3 60 53.3
Actinidia29595 Actinidia chinensis HOM05D002325 ORTHO05D000336 3.1e-07 58.9 55 54.5
CSS0032862 Camellia sinensis var. sinensis HOM05D002325 ORTHO05D000336 3.1e-07 58.9 55 52.7
CSS0040706 Camellia sinensis var. sinensis HOM05D002325 ORTHO05D000336 3.1e-07 58.9 55 52.7
FAN08G2799 Fragaria x ananassa HOM05D002325 ORTHO05D000336 3.1e-07 58.9 55 58.2
Actinidia30788 Actinidia chinensis HOM05D002325 ORTHO05D000336 4.1e-07 58.5 55 56.4
FAN04G0141 Fragaria x ananassa HOM05D002325 ORTHO05D000336 4.1e-07 58.5 51 66.7
Gohir.A02G128700 Gossypium hirsutum HOM05D002325 ORTHO05D000336 4.1e-07 58.5 69 46.4
Hma1.2p1_0225F.1_g094800 Hydrangea macrophylla HOM05D002325 ORTHO05D000336 4.1e-07 58.5 55 52.7
Hma1.2p1_0237F.1_g099600 Hydrangea macrophylla HOM05D002325 ORTHO05D000336 4.1e-07 58.5 56 51.8
RcHm_v2.0_Chr2g0112771 Rosa chinensis HOM05D002325 ORTHO05D000336 4.1e-07 58.5 82 43.9
CAN.G905.38 Capsicum annuum HOM05D002325 ORTHO05D000336 5.3e-07 58.2 69 47.8
QL06p048516 Quercus lobata HOM05D002325 ORTHO05D000336 5.3e-07 58.2 81 44.4
Sed0019668 Sechium edule HOM05D002325 ORTHO05D000336 5.3e-07 58.2 55 54.5
Sc16g0000170 Simmondsia chinensis HOM05D002325 ORTHO05D000336 5.3e-07 58.2 55 52.7
PGSC0003DMG400016227 Solanum tuberosum HOM05D002325 ORTHO05D000336 5.3e-07 58.2 69 47.8
CiPaw.07G178100 Carya illinoinensis HOM05D002325 ORTHO05D000336 7.0e-07 57.8 56 51.8
Gohir.A06G034700 Gossypium hirsutum HOM05D002325 ORTHO05D000336 7.0e-07 57.8 74 48.6
Lj2C542T13 Lonicera japonica HOM05D002325 ORTHO05D000336 7.0e-07 57.8 55 58.2
Solyc11g009050.3 Solanum lycopersicum HOM05D002325 ORTHO05D000336 7.0e-07 57.8 69 47.8
Sopen11g004820 Solanum pennellii HOM05D002325 ORTHO05D000336 7.0e-07 57.8 69 47.8
Atru.chr13.1136 Acer truncatum HOM05D002325 ORTHO05D000336 9.1e-07 57.4 64 53.1
CANSAT25G3520 Cannabis sativa HOM05D002325 ORTHO05D000336 9.1e-07 57.4 55 54.5
Duzib147G1348 Durio zibethinus HOM05D002325 ORTHO05D000336 9.1e-07 57.4 69 44.9
Gohir.D03G039400 Gossypium hirsutum HOM05D002325 ORTHO05D000336 9.1e-07 57.4 69 44.9
Gorai.003G040600 Gossypium raimondii HOM05D002325 ORTHO05D000336 9.1e-07 57.4 69 44.9
Nitab4.5_0004570g0040 Nicotiana tabacum HOM05D002325 ORTHO05D000336 9.1e-07 57.4 69 46.4
Rhsim06G0079500 Rhododendron simsii HOM05D002325 ORTHO05D000336 9.1e-07 57.4 55 52.7
Ah.05g169770 Amaranthus hybridus HOM05D002325 ORTHO05D000336 1.2e-06 57.0 56 51.8
EL10Ac1g01168 Beta vulgaris HOM05D002325 ORTHO05D000336 1.2e-06 57.0 56 51.8
AUR62001987 Chenopodium quinoa HOM05D002325 ORTHO05D000336 1.2e-06 57.0 64 48.4
AUR62003817 Chenopodium quinoa HOM05D002325 ORTHO05D000336 1.2e-06 57.0 64 48.4
DCAR_019218 Daucus carota HOM05D002325 ORTHO05D000336 1.2e-06 57.0 72 47.2
Duzib093G0298 Durio zibethinus HOM05D002325 ORTHO05D000336 1.2e-06 57.0 56 53.6
Duzib264G0923 Durio zibethinus HOM05D002325 ORTHO05D000336 1.2e-06 57.0 69 46.4
Gorai.010G039300 Gossypium raimondii HOM05D002325 ORTHO05D000336 1.2e-06 57.0 56 51.8
Gorai.010G039400 Gossypium raimondii HOM05D002325 ORTHO05D000336 1.2e-06 57.0 56 51.8
Peaxi162Scf00381g01014 Petunia axillaris HOM05D002325 ORTHO05D000336 1.2e-06 57.0 69 49.3
Sc23g0000300 Simmondsia chinensis HOM05D002325 ORTHO05D000336 1.2e-06 57.0 55 52.7
CSS0029968 Camellia sinensis var. sinensis HOM05D002325 ORTHO05D000336 1.5e-06 56.6 55 52.7
Duzib041G0499 Durio zibethinus HOM05D002325 ORTHO05D000336 1.5e-06 56.6 55 54.5
Duzib093G0827 Durio zibethinus HOM05D002325 ORTHO05D000336 1.5e-06 56.6 56 53.6
MD01G1033400 Malus domestica HOM05D002325 ORTHO05D000336 1.5e-06 56.6 56 50.0
Sc01g0000690 Simmondsia chinensis HOM05D002325 ORTHO05D000336 1.5e-06 56.6 55 52.7
HPP92_016781 Vanilla planifolia HOM05D002325 ORTHO05D000336 1.5e-06 56.6 55 56.4
Aa31LG9G14660 Aethionema arabicum HOM05D002325 ORTHO05D000336 2.0e-06 56.2 56 46.4
MSTRG.23355 Avicennia marina HOM05D002325 ORTHO05D000336 2.0e-06 56.2 55 52.7
Cc07_g14850 Coffea canephora HOM05D002325 ORTHO05D000336 2.0e-06 56.2 55 54.5
Lj1g0025325 Lotus japonicus HOM05D002325 ORTHO05D000336 2.0e-06 56.2 56 53.6
SalBow5G4204 Salvia bowleyana HOM05D002325 ORTHO05D000336 2.0e-06 56.2 68 45.6
Ah.03g143930 Amaranthus hybridus HOM05D002325 ORTHO05D000336 2.6e-06 55.8 64 46.9
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.6e-06 55.8 55 54.5
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.6e-06 55.8 55 54.5
CsaV3_3G047620 Cucumis sativus L. HOM05D002325 ORTHO05D000336 2.6e-06 55.8 55 54.5
Gorai.010G039200 Gossypium raimondii HOM05D002325 ORTHO05D000336 2.6e-06 55.8 69 43.5
Lj1g0007056 Lotus japonicus HOM05D002325 ORTHO05D000336 2.6e-06 55.8 58 50.0
Lj1g0027415 Lotus japonicus HOM05D002325 ORTHO05D000336 2.6e-06 55.8 56 51.8
MBI02_g02176_MAGBIO Magnolia biondii HOM05D002325 ORTHO05D000336 2.6e-06 55.8 55 52.7
GSVIVG01009069001 Vitis vinifera HOM05D002325 ORTHO05D000336 2.6e-06 55.8 70 47.1
Hma1.2p1_0308F.1_g120333 Hydrangea macrophylla HOM05D002325 ORTHO05D000336 3.4e-06 55.5 55 49.1
Manes.02G150700 Manihot esculenta HOM05D002325 ORTHO05D000336 3.4e-06 55.5 55 52.7
PSO541G3260 Papaver somniferum HOM05D002325 ORTHO05D000336 3.4e-06 55.5 64 50.0
PSO781G0146 Papaver somniferum HOM05D002325 ORTHO05D000336 3.4e-06 55.5 64 50.0
TAR628G0325 Trochodendron aralioides HOM05D002325 ORTHO05D000336 3.4e-06 55.5 55 52.7
Cpa.g.sc55.90 Carica papaya HOM05D002325 ORTHO05D000336 4.5e-06 55.1 68 42.6
Cc10_g06830 Coffea canephora HOM05D002325 ORTHO05D000336 4.5e-06 55.1 55 54.5
Gohir.A06G034800 Gossypium hirsutum HOM05D002325 ORTHO05D000336 4.5e-06 55.1 74 47.3
RcHm_v2.0_Chr7g0243381 Rosa chinensis HOM05D002325 ORTHO05D000336 4.5e-06 55.1 55 56.4
TPR.G26138 Trifolium pratense HOM05D002325 ORTHO05D000336 4.5e-06 55.1 72 44.4
TAR376G0320 Trochodendron aralioides HOM05D002325 ORTHO05D000336 4.5e-06 55.1 55 54.5
GSVIVG01006630001 Vitis vinifera HOM05D002325 ORTHO05D000336 4.5e-06 55.1 68 45.6
Phvul.009G032200 Phaseolus vulgaris HOM05D002325 ORTHO05D000336 5.9e-06 54.7 72 47.2
Sed0005105 Sechium edule HOM05D002325 ORTHO05D000336 5.9e-06 54.7 55 52.7
Hund13601 Selenicereus undatus HOM05D002325 ORTHO05D000336 5.9e-06 54.7 56 50.0
THA.LOC104816655 Tarenaya hassleriana HOM05D002325 ORTHO05D000336 5.9e-06 54.7 55 49.1
vmacro21247 Vaccinium macrocarpon HOM05D002325 ORTHO05D000336 5.9e-06 54.7 55 50.9
CDE03G0043 Ceratophyllum demersum HOM05D002325 ORTHO05D000336 7.7e-06 54.3 56 50.0
FAN28G1858 Fragaria x ananassa HOM05D002325 ORTHO05D000336 7.7e-06 54.3 55 50.9


User provided reference genes

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