Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2252 Fragaria x ananassa HOM05D001606 ORTHO05D009466 2.7e-108 395.6 236 100.0
FvH4_4g15620 Fragaria vesca HOM05D001606 ORTHO05D009466 2.4e-104 382.5 235 96.2
FAN22G1685 Fragaria x ananassa HOM05D001606 ORTHO05D009466 1.7e-102 376.3 235 94.9
FAN07G1192 Fragaria x ananassa HOM05D001606 ORTHO05D009466 9.3e-101 370.5 235 94.5
RcHm_v2.0_Chr4g0416191 Rosa chinensis HOM05D001606 ORTHO05D009466 2.2e-78 296.2 241 66.0
Prupe.1G013800 Prunus persica HOM05D001606 ORTHO05D009466 8.2e-65 251.1 240 55.8
FAN12G0319 Fragaria x ananassa HOM05D001606 ORTHO05D009466 1.2e-60 237.3 162 94.4
MD13G1193200 Malus domestica HOM05D001606 ORTHO05D009466 2.3e-59 233.0 245 52.2
QL06p002449 Quercus lobata HOM05D001606 ORTHO05D009466 1.6e-36 157.1 247 44.9
Cfa015647 Carpinus fangiana HOM05D001606 ORTHO05D009466 5.2e-35 152.1 252 41.3
Haze_00898 Corylus avellana HOM05D001606 ORTHO05D009466 5.2e-35 152.1 242 42.1
CiPaw.01G166200 Carya illinoinensis HOM05D001606 ORTHO05D009466 5.9e-31 138.7 247 45.7
TWI53G0280 Tripterygium wilfordii HOM05D001606 ORTHO05D009466 1.6e-28 130.6 255 36.1
MD16G1194100 Malus domestica HOM05D001606 ORTHO05D009466 3.6e-28 129.4 131 51.9
CANSAT78G1379 Cannabis sativa HOM05D001606 ORTHO05D009466 1.4e-27 127.5 225 39.6
Atru.chr1.2867 Acer truncatum HOM05D001606 ORTHO05D009466 7.5e-26 121.7 196 52.0
Manes.03G004700 Manihot esculenta HOM05D001606 ORTHO05D009466 2.2e-25 120.2 174 44.3
Sabra08G0116700 Salix brachista HOM05D001606 ORTHO05D009466 3.7e-25 119.4 121 54.5
Duzib212G0772 Durio zibethinus HOM05D001606 ORTHO05D009466 8.3e-25 118.2 206 41.7
Eucgr.H03479 Eucalyptus grandis HOM05D001606 ORTHO05D009466 4.1e-24 115.9 192 41.1
Gohir.D02G039000 Gossypium hirsutum HOM05D001606 ORTHO05D009466 4.1e-24 115.9 163 46.6
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 5.4e-24 115.5 159 45.3
Potri.008G153100 Populus trichocarpa HOM05D001606 ORTHO05D009466 5.4e-24 115.5 125 51.2
Sed0025667 Sechium edule HOM05D001606 ORTHO05D009466 5.4e-24 115.5 170 44.7
Gorai.005G042900 Gossypium raimondii HOM05D000439 ORTHO05D006172 1.2e-23 114.4 151 49.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.6e-23 114.0 174 42.5
Thecc.04G232200 Theobroma cacao HOM05D001606 ORTHO05D009466 4.6e-23 112.5 198 44.4
TAR633G1095 Trochodendron aralioides HOM05D001606 ORTHO05D009466 6.0e-23 112.1 125 53.6
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 2.3e-22 110.2 164 45.7
Ciclev10005268m.g Citrus clementina HOM05D001606 ORTHO05D009466 6.6e-22 108.6 242 46.7
CSS0027080 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D009466 8.6e-22 108.2 200 44.0
CSS0046885 Camellia sinensis var. sinensis HOM05D001606 ORTHO05D009466 8.6e-22 108.2 200 44.0
Phvul.002G045500 Phaseolus vulgaris HOM05D001606 ORTHO05D009466 3.3e-21 106.3 225 35.1
Rhsim02G0025400 Rhododendron simsii HOM05D001606 ORTHO05D009466 3.3e-21 106.3 121 55.4
Medtr5g006310 Medicago truncatula HOM05D001606 ORTHO05D009466 4.3e-21 105.9 124 49.2
Ca_24396_v3 Cicer arietinum L. HOM05D001606 ORTHO05D009466 5.6e-21 105.5 144 43.8
COL.COLO4_21480 Corchorus olitorius HOM05D001606 ORTHO05D009466 5.6e-21 105.5 246 36.6
CsaV3_5G038360 Cucumis sativus L. HOM05D001606 ORTHO05D009466 5.6e-21 105.5 170 41.8
Cpa.g.sc37.137 Carica papaya HOM05D001606 ORTHO05D009466 9.5e-21 104.8 232 34.1
Cc03_g03800 Coffea canephora HOM05D001606 ORTHO05D009466 1.6e-20 104.0 126 46.8
CAN.G1965.2 Capsicum annuum HOM05D001606 ORTHO05D009466 4.7e-20 102.4 119 50.4
Sopen03g001190 Solanum pennellii HOM05D001606 ORTHO05D009466 1.1e-19 101.3 121 50.4
Glyma.11G005600 Glycine max HOM05D001606 ORTHO05D009466 2.3e-19 100.1 197 35.0
Solyc03g005180.1 Solanum lycopersicum HOM05D001606 ORTHO05D009466 6.8e-19 98.6 121 50.4
Lj3C734T9 Lonicera japonica HOM05D001606 ORTHO05D009466 1.2e-18 97.8 176 39.8
GSVIVG01017980001 Vitis vinifera HOM05D001606 ORTHO05D009466 1.2e-18 97.8 175 41.7
VMungo1215G1276 Vigna mungo HOM05D001606 ORTHO05D009466 2.0e-18 97.1 110 47.3
arahy.Tifrunner.gnm1.ann1.MT9GWQ Arachis hypogaea HOM05D001606 ORTHO05D009466 7.5e-18 95.1 115 47.8
arahy.Tifrunner.gnm1.ann1.V62N89 Arachis hypogaea HOM05D001606 ORTHO05D009466 7.5e-18 95.1 115 47.8
Psat4g210560 Pisum sativum HOM05D001606 ORTHO05D009466 1.7e-17 94.0 123 46.3
PGSC0003DMG400047204 Solanum tuberosum HOM05D001606 ORTHO05D009466 1.7e-17 94.0 106 49.1
HanXRQChr10g0303151 Helianthus annuus HOM05D001606 ORTHO05D009466 2.2e-17 93.6 117 48.7
PGR044G2176 Punica granatum HOM05D001606 ORTHO05D009466 2.2e-17 93.6 212 33.5
Sed0015329 Sechium edule HOM05D001606 ORTHO05D009466 1.9e-16 90.5 120 46.7
Aqoxy2G03392 Aquilegia oxysepala HOM05D001606 ORTHO05D009466 7.1e-16 88.6 108 48.1
QL02p103284 Quercus lobata HOM05D001606 ORTHO05D009466 7.1e-16 88.6 64 68.8
LjContig00408g0015674 Lotus japonicus HOM05D001606 ORTHO05D009466 1.6e-15 87.4 118 44.1
MSTRG.25112 Avicennia marina HOM05D001606 ORTHO05D009466 2.1e-15 87.0 241 34.9
Migut.N00185 Erythranthe guttata HOM05D001606 ORTHO05D009466 2.7e-15 86.7 161 37.3
Hund12126 Selenicereus undatus HOM05D001606 ORTHO05D009466 6.0e-15 85.5 220 31.4
Lsat_1_v5_gn_2_32501 Lactuca sativa HOM05D001606 ORTHO05D009466 1.3e-14 84.3 172 36.0
Nitab4.5_0008971g0010 Nicotiana tabacum HOM05D001606 ORTHO05D009466 1.7e-14 84.0 114 42.1
Aa31LG8G9020 Aethionema arabicum HOM05D001606 ORTHO05D009466 3.9e-14 82.8 95 47.4
ECA240G0391 Erigeron canadensis HOM05D001606 ORTHO05D009466 3.9e-14 82.8 112 40.2
Sc13g0004400 Simmondsia chinensis HOM05D001606 ORTHO05D009466 3.9e-14 82.8 116 44.0
Peaxi162Scf00152g01315 Petunia axillaris HOM05D001606 ORTHO05D009466 8.6e-14 81.6 112 41.1
Nitab4.5_0000559g0100 Nicotiana tabacum HOM05D001606 ORTHO05D009466 1.1e-13 81.3 105 41.9
MBI02_g35758_MAGBIO Magnolia biondii HOM05D000379 ORTHO05D009466 1.9e-13 80.5 120 39.2
SalBow3G2864 Salvia bowleyana HOM05D001606 ORTHO05D009466 1.9e-13 80.5 121 41.3
ATR0598G343 Amborella trichopoda HOM05D001606 ORTHO05D009466 2.5e-13 80.1 122 41.0
CARHR098360 Cardamine hirsuta HOM05D001606 ORTHO05D009466 3.3e-13 79.7 94 44.7
DCAR_024161 Daucus carota HOM05D001606 ORTHO05D009466 4.3e-13 79.3 101 48.5
SGA_v2.0_scaffold7G04181 Striga asiatica HOM05D001606 ORTHO05D009466 4.3e-13 79.3 118 42.4
AL3G36760 Arabidopsis lyrata HOM05D001606 ORTHO05D009466 7.3e-13 78.6 101 43.6
THA.LOC104803026 Tarenaya hassleriana HOM05D001606 ORTHO05D009466 7.3e-13 78.6 107 41.1
AT3G22450 Arabidopsis thaliana HOM05D001606 ORTHO05D009466 9.5e-13 78.2 101 43.6
Lalb_Chr09g0319861 Lupinus albus HOM05D001606 ORTHO05D009466 2.8e-12 76.6 123 41.5
AUR62007971 Chenopodium quinoa HOM05D001606 ORTHO05D009466 3.6e-12 76.3 110 43.6
Thhalv10021167m.g Eutrema salsugineum HOM05D001606 ORTHO05D009466 3.6e-12 76.3 125 36.0
Gohir.A02G032300 Gossypium hirsutum HOM05D001606 ORTHO05D009466 3.6e-12 76.3 147 37.4
Carub.0003s2263 Capsella rubella HOM05D001606 ORTHO05D009466 6.2e-12 75.5 103 43.7
BcaC09g49176 Brassica carinata HOM05D001606 ORTHO05D009466 1.8e-11 73.9 126 36.5
C01p41820 Brassica napus HOM05D001606 ORTHO05D009466 1.8e-11 73.9 126 36.5
BolC1t04136H Brassica oleracea HOM05D001606 ORTHO05D009466 1.8e-11 73.9 126 36.5
Sp3g20220 Schrenkiella parvula HOM05D001606 ORTHO05D009466 2.3e-11 73.6 93 40.9
TPR.G38004 Trifolium pratense HOM05D001606 ORTHO05D009466 3.1e-11 73.2 66 54.5
A01p32640 Brassica napus HOM05D001606 ORTHO05D009466 8.9e-11 71.6 126 38.9
Nn4g26327 Nelumbo nucifera HOM05D001606 ORTHO05D009466 8.9e-11 71.6 121 38.8
BcaB04g20516 Brassica carinata HOM05D001606 ORTHO05D009466 1.5e-10 70.9 88 45.5
unitig_748.g7954 Utricularia gibba HOM05D001606 ORTHO05D009466 3.4e-10 69.7 132 34.8
HPP92_025952 Vanilla planifolia HOM05D001606 ORTHO05D009466 3.4e-10 69.7 131 34.4
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 3.7e-09 66.2 96 42.7
Ah.02g126540 Amaranthus hybridus HOM05D001606 ORTHO05D009466 1.1e-08 64.7 101 38.6
BraA01t03392Z Brassica rapa HOM05D001606 ORTHO05D009466 1.1e-08 64.7 128 35.9
CDE07G1475 Ceratophyllum demersum HOM05D001606 ORTHO05D009466 3.2e-08 63.2 192 33.9
SHI00448 Sapria himalayana HOM05D001606 ORTHO05D009466 5.4e-08 62.4 107 39.3
Actinidia08491 Actinidia chinensis HOM05D001606 ORTHO05D009466 1.2e-07 61.2 116 39.7


User provided reference genes

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