Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.7e-76 289.3 150 100.0
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 2.6e-56 222.2 123 95.9
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 4.3e-51 204.9 124 89.5
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.3e-51 204.9 124 89.5
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.1e-50 202.6 124 88.7
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-49 199.9 123 87.8
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.0e-49 198.4 123 87.8
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.8e-48 194.5 115 88.7
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.9e-46 189.5 123 85.4
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 4.6e-37 158.3 124 71.8
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 6.7e-36 154.5 123 70.7
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 3.7e-34 148.7 126 68.3
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.0e-32 142.9 120 66.7
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 3.8e-31 138.7 126 63.5
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 8.4e-31 137.5 128 66.4
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.4e-30 136.7 110 69.1
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.4e-30 136.0 118 65.3
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 7.1e-30 134.4 121 59.5
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 7.1e-30 134.4 124 63.7
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 7.1e-30 134.4 123 64.2
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 7.1e-30 134.4 119 63.0
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 7.1e-30 134.4 115 66.1
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 9.3e-30 134.0 126 61.1
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 9.3e-30 134.0 109 63.3
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 2.1e-29 132.9 126 63.5
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 2.1e-29 132.9 150 58.7
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 2.1e-29 132.9 121 61.2
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 2.1e-29 132.9 123 62.6
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 7.9e-29 131.0 117 61.5
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 7.9e-29 131.0 110 69.1
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.9e-29 131.0 120 64.2
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 7.9e-29 131.0 125 57.6
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 7.9e-29 131.0 126 59.5
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 7.9e-29 131.0 120 61.7
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.0e-28 130.6 126 61.1
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 1.0e-28 130.6 120 64.2
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 1.0e-28 130.6 117 59.0
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.3e-28 130.2 121 62.0
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 1.3e-28 130.2 117 59.0
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.3e-28 130.2 107 64.5
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.8e-28 129.8 117 61.5
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 1.8e-28 129.8 126 58.7
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 2.3e-28 129.4 117 61.5
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 2.3e-28 129.4 127 61.4
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 2.3e-28 129.4 121 59.5
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 3.0e-28 129.0 123 61.0
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 3.0e-28 129.0 120 59.2
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 3.0e-28 129.0 123 59.3
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.9e-28 128.6 119 63.0
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 3.9e-28 128.6 123 61.0
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 5.1e-28 128.3 112 63.4
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 5.1e-28 128.3 126 59.5
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 5.1e-28 128.3 129 57.4
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 5.1e-28 128.3 120 60.8
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 6.7e-28 127.9 110 62.7
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 6.7e-28 127.9 121 60.3
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 8.7e-28 127.5 121 62.8
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 8.7e-28 127.5 133 57.1
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.1e-27 127.1 122 61.5
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.5e-27 126.7 126 60.3
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.5e-27 126.7 114 58.8
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.5e-27 126.7 118 59.3
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.5e-27 126.7 107 65.4
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 1.9e-27 126.3 124 61.3
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 2.5e-27 125.9 123 58.5
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 2.5e-27 125.9 128 59.4
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 4.3e-27 125.2 123 60.2
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 5.6e-27 124.8 131 53.4
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 5.6e-27 124.8 122 59.0
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 5.6e-27 124.8 113 60.2
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 7.4e-27 124.4 120 58.3
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 7.4e-27 124.4 120 60.8
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 7.4e-27 124.4 127 61.4
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 9.6e-27 124.0 119 60.5
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 1.3e-26 123.6 120 58.3
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 1.3e-26 123.6 114 57.0
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.3e-26 123.6 116 58.6
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.3e-26 123.6 125 57.6
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.3e-26 123.6 126 61.1
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.1e-26 122.9 119 59.7
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 2.8e-26 122.5 126 60.3
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 4.8e-26 121.7 116 57.8
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 4.8e-26 121.7 121 57.0
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 6.2e-26 121.3 131 52.7
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 8.2e-26 120.9 131 55.7
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 8.2e-26 120.9 121 57.0
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.1e-25 120.6 128 58.6
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.4e-25 120.2 127 55.1
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.8e-25 119.8 120 60.0
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.8e-25 119.8 126 58.7
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 2.4e-25 119.4 124 58.1
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 2.4e-25 119.4 128 54.7
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.4e-25 119.4 122 62.3
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 3.1e-25 119.0 117 59.8
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 3.1e-25 119.0 143 53.1
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 4.0e-25 118.6 123 60.2
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 4.0e-25 118.6 120 59.2
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 4.0e-25 118.6 124 55.6
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 5.3e-25 118.2 121 58.7
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 6.9e-25 117.9 134 54.5
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 9.0e-25 117.5 125 59.2
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.2e-24 117.1 118 59.3
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.5e-24 116.7 124 55.6
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 2.0e-24 116.3 124 55.6
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 2.6e-24 115.9 123 56.1
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.4e-24 115.5 131 55.0
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 3.4e-24 115.5 150 48.7
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 4.5e-24 115.2 134 53.7
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 5.8e-24 114.8 126 57.1
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 7.6e-24 114.4 123 56.1
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 7.6e-24 114.4 123 56.1
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 7.6e-24 114.4 124 55.6
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.3e-23 113.6 126 54.8
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.7e-23 113.2 112 58.0
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 1.7e-23 113.2 157 46.5
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 2.2e-23 112.8 110 57.3
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.2e-23 112.8 127 52.8
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 2.2e-23 112.8 122 56.6
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 2.9e-23 112.5 121 53.7
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 3.8e-23 112.1 120 52.5
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 8.4e-23 110.9 130 50.8
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.9e-22 109.8 114 52.6
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 2.5e-22 109.4 104 58.7
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 7.1e-22 107.8 88 68.2
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.6e-21 106.7 89 66.3
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 2.1e-21 106.3 117 51.3
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 3.5e-21 105.5 88 67.0
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 4.6e-21 105.1 58 91.4
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.0e-20 104.0 96 62.5
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.0e-20 104.0 129 47.3
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.3e-19 99.0 96 59.4
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.3e-19 98.6 95 57.9
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.3e-18 97.1 120 46.7
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.2e-18 96.3 128 47.7
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.1e-17 94.0 58 84.5
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 1.4e-17 93.6 120 48.3
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.6e-16 89.4 119 52.1
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 3.4e-16 89.0 110 51.8
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.0e-15 87.4 96 54.2
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.3e-15 87.0 65 70.8
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 5.0e-15 85.1 69 69.6
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.9e-14 83.2 107 48.6
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 5.5e-14 81.6 71 54.9
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 7.2e-14 81.3 147 36.7
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.6e-13 80.1 60 71.7
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 3.0e-12 75.9 96 46.9
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.9e-11 73.2 131 36.6
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 2.5e-11 72.8 120 37.5
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 3.3e-11 72.4 42 81.0
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.7e-10 70.1 66 57.6
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 2.8e-10 69.3 86 54.7
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 9.1e-09 64.3 66 50.0
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 1.2e-08 63.9 45 71.1
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 2.6e-08 62.8 37 78.4
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.7e-07 60.1 91 42.9
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 6.5e-07 58.2 99 38.4


User provided reference genes

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