Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.6e-174 615.9 304 100.0
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.7e-169 598.6 308 97.1
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 2.5e-167 592.0 308 95.8
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 1.1e-149 533.5 314 87.6
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 2.4e-141 505.8 312 84.0
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 6.5e-139 497.7 308 85.4
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 7.4e-135 484.2 314 80.6
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 1.4e-117 426.8 303 73.3
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 7.0e-117 424.5 305 75.1
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 5.9e-116 421.4 311 70.4
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 1.3e-115 420.2 294 73.5
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 3.6e-113 412.1 246 86.6
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 4.0e-112 408.7 256 77.7
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 8.8e-112 407.5 256 77.7
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 2.6e-111 406.0 237 81.4
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 2.6e-111 406.0 310 68.4
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 9.8e-111 404.1 270 76.3
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 9.8e-111 404.1 256 77.3
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 1.3e-110 403.7 307 69.1
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 1.7e-110 403.3 251 80.5
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 1.7e-110 403.3 304 68.8
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.8e-110 402.5 285 71.2
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 4.8e-110 401.7 294 71.4
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 1.4e-109 400.2 288 69.4
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 1.4e-109 400.2 298 69.5
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 3.1e-109 399.1 303 69.6
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 4.1e-109 398.7 298 69.1
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 5.4e-109 398.3 309 68.0
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 2.7e-108 396.0 235 82.1
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 3.5e-108 395.6 245 78.4
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 7.7e-108 394.4 268 72.0
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 1.0e-107 394.0 234 83.3
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 1.0e-107 394.0 237 80.6
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 1.3e-107 393.7 256 75.0
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 1.3e-107 393.7 331 64.0
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 2.9e-107 392.5 304 66.8
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 2.9e-107 392.5 301 66.1
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 5.0e-107 391.7 234 79.5
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 5.0e-107 391.7 244 78.3
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 6.6e-107 391.3 246 77.6
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 8.6e-107 391.0 285 69.1
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 1.5e-106 390.2 244 77.9
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 4.2e-106 388.7 298 66.4
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 5.5e-106 388.3 273 70.0
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 9.5e-106 387.5 235 78.3
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 1.2e-105 387.1 277 69.0
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 1.6e-105 386.7 306 66.7
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 1.6e-105 386.7 235 77.9
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 2.1e-105 386.3 296 67.9
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 2.8e-105 386.0 297 66.0
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 4.7e-105 385.2 258 73.6
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 4.7e-105 385.2 265 70.9
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 4.7e-105 385.2 277 70.0
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 1.0e-104 384.0 280 68.9
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 1.8e-104 383.3 247 74.9
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 2.3e-104 382.9 251 72.9
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 3.0e-104 382.5 301 66.8
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 4.0e-104 382.1 244 75.0
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 4.0e-104 382.1 311 67.2
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 5.2e-104 381.7 303 65.7
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 5.2e-104 381.7 301 66.8
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 6.8e-104 381.3 301 65.1
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 2.0e-103 379.8 315 63.5
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 2.6e-103 379.4 235 75.3
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 7.5e-103 377.9 235 76.2
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 7.5e-103 377.9 249 72.7
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 9.8e-103 377.5 303 65.7
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 9.8e-103 377.5 244 74.6
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 1.3e-102 377.1 235 74.9
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 2.2e-102 376.3 273 68.9
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 2.2e-102 376.3 237 75.1
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 8.3e-102 374.4 304 64.8
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 8.3e-102 374.4 235 74.9
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 1.1e-101 374.0 314 63.7
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 4.1e-101 372.1 300 62.7
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 1.2e-100 370.5 295 65.4
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 1.6e-100 370.2 274 68.2
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 5.9e-100 368.2 235 76.2
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 5.9e-100 368.2 292 65.4
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 1.3e-99 367.1 311 64.0
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.9e-99 365.5 239 71.1
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 5.0e-99 365.2 322 60.9
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 8.6e-99 364.4 253 70.8
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 1.9e-98 363.2 293 64.2
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 7.3e-98 361.3 309 63.1
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 2.8e-97 359.4 271 67.2
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 1.4e-96 357.1 288 63.5
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 8.9e-96 354.4 235 72.8
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 1.2e-95 354.0 259 68.3
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 1.7e-94 350.1 256 67.6
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 3.7e-94 349.0 332 59.6
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 4.9e-94 348.6 235 72.3
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 1.2e-92 344.0 288 59.7
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 1.6e-92 343.6 233 67.8
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 6.0e-92 341.7 306 60.8
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.7e-91 340.1 234 68.4
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 9.5e-90 334.3 250 63.2
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 8.0e-89 331.3 233 65.7
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 3.1e-88 329.3 234 65.0
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 4.4e-87 325.5 232 64.7
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 4.9e-86 322.0 219 68.5
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 8.3e-86 321.2 259 61.0
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.1e-85 320.9 235 65.5
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 1.9e-85 320.1 219 67.1
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 2.4e-85 319.7 234 65.0
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 4.1e-85 318.9 219 67.1
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 2.7e-84 316.2 255 59.6
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 6.0e-84 315.1 267 61.8
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.1e-82 310.8 269 63.6
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.9e-82 310.1 228 64.5
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 1.9e-82 310.1 263 60.1
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 2.6e-79 299.7 247 61.9
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 6.4e-78 295.0 244 61.1
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 5.4e-77 292.0 235 61.3
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 1.5e-74 283.9 249 63.5
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 4.0e-72 275.8 315 53.3
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 8.9e-72 274.6 278 54.7
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 2.6e-71 273.1 162 77.8
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 2.9e-70 269.6 232 58.2
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 1.9e-69 266.9 184 66.3
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 4.2e-69 265.8 186 68.8
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 2.8e-65 253.1 245 58.4
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 8.1e-65 251.5 286 47.2
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 1.0e-59 234.6 182 65.9
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.7e-59 233.8 277 53.4
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 1.9e-58 230.3 196 60.2
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 3.6e-57 226.1 164 69.5
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 4.0e-56 222.6 181 61.3
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 1.7e-46 190.7 120 69.2
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 2.9e-46 189.9 287 39.4
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 4.3e-42 176.0 277 40.8
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 3.2e-37 159.8 115 67.0
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 7.2e-37 158.7 105 74.3
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 3.4e-31 139.8 275 38.5
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 5.9e-31 139.0 135 55.6
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 1.0e-30 138.3 101 67.3
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 1.6e-28 131.0 145 52.4
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 1.6e-28 131.0 121 55.4
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 7.9e-28 128.6 73 83.6
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 7.9e-20 102.1 58 84.5
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.0e-15 87.4 94 50.0
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 4.5e-15 86.3 74 56.8
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.3e-14 84.7 86 54.7
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.9e-13 80.9 66 59.1
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 4.7e-12 76.3 57 63.2


User provided reference genes

Program Settings