Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.2e-73 278.5 158 100.0
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.9e-67 257.7 159 92.5
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.9e-66 255.4 159 91.8
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 5.0e-66 254.6 159 91.8
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 3.2e-57 225.3 157 80.3
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 4.1e-44 181.8 158 67.1
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.3e-42 176.8 156 64.7
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.3e-42 176.8 159 66.0
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.6e-40 169.9 151 63.6
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 3.6e-40 168.7 152 63.2
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 6.1e-40 167.9 151 64.2
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 8.0e-40 167.5 153 64.7
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 1.4e-39 166.8 152 61.8
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 2.0e-38 162.9 152 63.8
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 9.8e-38 160.6 148 62.2
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 3.7e-37 158.7 152 61.8
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.3e-37 157.9 155 57.4
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 1.8e-36 156.4 152 59.9
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.4e-36 156.0 153 60.8
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.1e-36 155.6 153 58.2
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 9.2e-36 154.1 152 59.9
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 2.0e-35 152.9 152 59.2
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.3e-34 150.2 151 57.6
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 2.9e-34 149.1 152 53.9
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 3.8e-34 148.7 151 59.6
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.9e-33 146.4 155 54.2
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.2e-32 143.7 154 52.6
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.1e-32 142.9 157 56.1
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 6.1e-32 141.4 159 54.1
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 8.0e-32 141.0 151 55.6
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 2.3e-31 139.4 159 48.4
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 5.2e-31 138.3 157 54.1
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 8.9e-31 137.5 158 52.5
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.5e-30 136.7 153 54.2
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 1.5e-30 136.7 151 53.6
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.0e-30 136.3 150 52.0
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.6e-30 136.0 153 52.3
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.4e-30 135.6 154 52.6
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.4e-30 135.6 154 52.6
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.4e-30 135.6 155 54.2
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 5.7e-30 134.8 154 54.5
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.8e-30 134.0 151 51.0
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 2.2e-29 132.9 154 54.5
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.1e-28 130.6 147 48.3
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.8e-28 129.8 152 54.6
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-28 129.4 151 51.0
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 4.1e-28 128.6 149 48.3
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 5.4e-28 128.3 160 45.6
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 7.0e-28 127.9 145 50.3
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 9.2e-28 127.5 153 46.4
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 9.2e-28 127.5 149 51.0
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.6e-27 126.7 145 50.3
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 2.0e-27 126.3 146 52.7
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-27 126.3 157 51.6
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.0e-27 126.3 151 50.3
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.0e-26 124.0 157 49.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.0e-26 124.0 157 49.0
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-26 123.2 160 50.6
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.3e-26 122.9 151 54.3
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.3e-26 122.9 161 46.6
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 2.3e-26 122.9 149 51.7
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 3.0e-26 122.5 151 49.0
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.6e-26 121.3 157 49.0
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 9.5e-25 117.5 160 48.8
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.2e-24 117.1 174 43.1
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.1e-24 116.3 157 47.8
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.8e-24 115.9 150 50.0
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 4.7e-24 115.2 146 47.3
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.2e-24 114.8 157 44.6
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.2e-24 114.8 148 48.6
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.0e-23 114.0 149 47.7
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.0e-23 114.0 149 47.7
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.1e-23 112.5 162 46.3
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 4.0e-23 112.1 147 49.7
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 6.8e-23 111.3 193 40.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 8.9e-23 110.9 159 47.8
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.2e-22 110.5 117 54.7
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.6e-22 109.4 146 49.3
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.4e-22 108.6 159 44.0
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 7.5e-22 107.8 137 51.8
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 9.8e-22 107.5 146 47.9
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.7e-21 106.7 159 44.0
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-21 106.7 156 47.4
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.7e-21 106.7 131 45.8
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.7e-21 105.5 154 47.4
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.4e-20 102.8 136 50.7
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 2.4e-20 102.8 155 43.2
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.2e-20 102.4 146 43.8
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.1e-20 102.1 148 43.2
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 4.6e-19 98.6 151 44.4
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 7.8e-19 97.8 147 44.2
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-18 97.1 120 45.8
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.3e-18 97.1 128 45.3
FAN07G1512 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.3e-18 97.1 62 88.7
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.3e-18 97.1 149 39.6
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 1.3e-18 97.1 135 46.7
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.0e-18 95.9 159 43.4
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 3.0e-18 95.9 146 43.8
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.1e-17 94.0 127 44.1
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-17 93.6 159 42.8
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 2.5e-17 92.8 136 44.1
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.5e-17 92.8 149 39.6
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 3.3e-17 92.4 134 47.8
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 5.6e-17 91.7 127 43.3
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 5.6e-17 91.7 157 41.4
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 7.3e-17 91.3 157 41.4
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 9.5e-17 90.9 157 40.8
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 1.2e-16 90.5 155 40.6
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 2.1e-16 89.7 105 49.5
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.8e-16 89.4 158 43.0
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-16 89.4 157 40.1
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-16 89.4 157 40.8
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 4.7e-16 88.6 153 41.2
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 8.1e-16 87.8 110 49.1
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.4e-15 87.0 166 40.4
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 145 40.7
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.3e-15 86.3 155 38.1
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 163 41.1
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 6.8e-15 84.7 157 39.5
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 6.8e-15 84.7 157 39.5
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-14 84.0 151 43.0
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-14 84.0 157 39.5
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-14 84.0 157 39.5
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.2e-14 84.0 115 46.1
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 1.5e-14 83.6 179 37.4
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 3.4e-14 82.4 145 40.0
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.4e-14 82.0 150 42.7
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 4.4e-14 82.0 153 38.6
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 5.8e-14 81.6 145 39.3
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 7.5e-14 81.3 171 36.8
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 7.5e-14 81.3 149 40.3
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 7.5e-14 81.3 142 38.0
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 9.8e-14 80.9 150 42.0
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 1.7e-13 80.1 124 41.9
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 1.7e-13 80.1 124 41.9
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-13 80.1 141 42.6
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.2e-13 79.7 156 42.3
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.2e-13 79.7 156 37.2
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-13 79.7 157 38.2
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-13 79.3 109 50.5
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 2.9e-13 79.3 161 37.3
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.7e-13 79.0 129 41.1
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.7e-13 79.0 158 39.9
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 4.9e-13 78.6 124 40.3
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 6.4e-13 78.2 148 38.5
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 8.3e-13 77.8 180 35.0
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 8.3e-13 77.8 145 37.2
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 1.9e-12 76.6 140 42.1
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 2.7e-11 72.8 149 33.6
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 3.5e-11 72.4 161 35.4
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 4.6e-11 72.0 172 36.0
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 4.6e-11 72.0 147 33.3
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 4.6e-11 72.0 152 37.5
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 6.0e-11 71.6 142 34.5
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 6.0e-11 71.6 142 34.5
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.7e-10 70.1 147 38.8
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.9e-10 68.9 111 38.7
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 3.9e-10 68.9 165 40.0
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 8.6e-10 67.8 161 36.0
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 8.6e-10 67.8 161 36.0
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 1.1e-09 67.4 162 35.8
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.5e-09 67.0 154 33.8
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-09 67.0 144 39.6
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.9e-09 66.6 162 37.0
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 1.9e-09 66.6 111 41.4
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 4.3e-09 65.5 142 33.8
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.3e-09 65.5 158 35.4
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 5.6e-09 65.1 158 36.1
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 9.5e-09 64.3 142 33.8
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.1e-08 63.2 94 39.4
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 6.2e-08 61.6 151 37.7
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.1e-07 60.8 154 35.1
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-07 60.8 125 40.8
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-07 60.8 159 34.0
FvH4_4g18450 Fragaria vesca HOM05D057627 ORTHO05D046375 2.3e-07 59.7 139 35.3
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 3.1e-07 59.3 116 40.5
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 4.0e-07 58.9 150 31.3
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.2e-07 58.5 144 36.1
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 8.9e-07 57.8 98 43.9
ECA234G1138 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.2e-06 57.4 148 38.5
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 1.2e-06 57.4 153 34.6
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.0e-06 56.6 115 40.9
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.4e-06 55.8 147 34.0
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 5.8e-06 55.1 140 38.6
FAN12G3918 Fragaria x ananassa HOM05D057627 ORTHO05D046375 7.6e-06 54.7 139 32.4


User provided reference genes

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