Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.5e-228 794.7 416 100.0
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.0e-186 656.0 419 86.2
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.8e-185 652.1 419 85.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.8e-182 641.7 415 84.8
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 5.7e-162 574.7 419 76.4
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 8.3e-145 517.7 419 69.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 1.9e-141 506.5 381 74.8
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 6.4e-137 491.5 419 65.9
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 6.4e-137 491.5 419 65.9
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.9e-136 490.0 419 64.9
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.7e-118 430.3 421 59.6
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 4.7e-116 422.2 415 59.3
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 5.8e-114 415.2 421 57.5
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 5.3e-107 392.1 407 57.0
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.0e-106 390.2 408 56.6
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 9.9e-106 387.9 414 55.1
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.3e-105 387.5 425 52.0
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-105 387.1 414 51.9
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.2e-105 386.7 407 56.0
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.4e-105 385.2 414 51.9
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 6.4e-105 385.2 410 53.4
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 9.3e-104 381.3 420 53.6
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.3e-104 381.3 414 51.2
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.9e-102 375.9 403 52.9
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.1e-101 374.4 420 53.3
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.5e-101 373.2 403 52.4
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.6e-100 370.5 420 53.6
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 2.1e-100 370.2 416 53.6
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 4.8e-100 369.0 415 53.3
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.4e-99 366.7 403 51.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.1e-99 366.3 410 50.2
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 2.6e-98 363.2 410 53.4
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.4e-98 362.8 416 51.7
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 9.9e-98 361.3 408 52.9
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-97 360.9 410 49.8
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.9e-97 359.8 407 53.6
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.8e-97 359.4 410 50.0
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.1e-95 353.6 394 52.0
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 2.1e-95 353.6 399 52.1
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 7.9e-95 351.7 360 53.9
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 2.3e-94 350.1 415 50.1
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.3e-94 350.1 410 50.7
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 6.7e-94 348.6 415 52.0
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 3.3e-93 346.3 415 49.2
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.3e-92 344.4 370 54.1
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.3e-92 344.4 411 50.9
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 3.7e-92 342.8 413 49.4
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 1.4e-91 340.9 392 53.1
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 3.1e-91 339.7 406 50.0
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 2.0e-90 337.0 402 49.3
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.8e-89 332.8 411 49.4
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.9e-89 332.4 413 49.4
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.4e-88 330.9 399 48.4
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 4.2e-88 329.3 422 48.6
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 7.1e-88 328.6 414 49.0
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 9.3e-88 328.2 382 51.6
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.2e-87 327.8 414 48.8
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.6e-87 327.4 422 48.3
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 4.6e-87 325.9 419 45.6
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.0e-86 324.7 414 48.6
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.8e-86 323.9 406 49.0
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 3.9e-86 322.8 422 47.9
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 5.1e-86 322.4 402 46.8
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 6.7e-86 322.0 365 53.2
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.9e-85 320.5 417 47.2
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 2.5e-85 320.1 398 49.5
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 2.1e-84 317.0 414 46.4
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 8.2e-84 315.1 407 48.2
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.8e-83 313.9 426 46.5
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.5e-82 310.8 414 46.6
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.5e-82 310.8 396 45.7
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.7e-81 307.4 423 46.1
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 5.0e-81 305.8 413 48.2
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 6.5e-81 305.4 412 45.6
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.5e-81 305.4 412 45.9
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.6e-79 300.8 410 44.9
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 2.1e-79 300.4 409 46.0
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.7e-79 300.1 401 47.4
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 3.6e-79 299.7 391 47.1
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 4.6e-79 299.3 409 46.0
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.0e-78 298.1 353 51.6
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.8e-78 297.4 403 47.4
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.3e-78 297.0 359 49.6
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 3.0e-78 296.6 412 45.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 3.9e-78 296.2 403 46.2
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 8.7e-78 295.0 409 45.5
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 8.7e-78 295.0 409 45.5
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.9e-77 293.9 372 48.4
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.9e-77 293.9 411 46.0
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.5e-77 293.5 414 43.5
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.5e-77 293.5 405 46.4
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 3.3e-77 293.1 414 45.9
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 7.4e-77 292.0 402 48.3
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 6.9e-75 285.4 413 45.8
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.6e-74 283.5 408 44.6
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.3e-73 281.2 347 48.1
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 3.8e-73 279.6 408 44.4
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 3.8e-73 279.6 411 44.5
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 5.0e-73 279.3 408 44.6
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.9e-72 277.3 424 44.3
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.9e-72 277.3 408 44.4
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 4.2e-72 276.2 397 45.3
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 9.4e-72 275.0 415 44.6
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.2e-71 274.6 408 44.4
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 4.6e-71 272.7 422 43.4
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 4.6e-71 272.7 422 43.4
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 6.1e-71 272.3 395 44.1
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.0e-70 271.6 418 43.3
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.4e-70 271.2 423 44.4
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.8e-70 270.8 420 42.6
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 2.3e-70 270.4 418 43.3
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 2.3e-70 270.4 418 43.3
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 8.8e-70 268.5 409 43.5
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 4.8e-68 262.7 416 40.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 5.3e-67 259.2 399 41.9
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 7.7e-66 255.4 374 44.9
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 7.7e-66 255.4 412 42.5
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 3.8e-65 253.1 418 40.9
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 4.2e-64 249.6 330 45.5
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.0e-62 245.0 369 43.9
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 2.0e-61 240.7 393 40.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.7e-60 237.7 394 41.4
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 4.8e-60 236.1 399 38.6
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.4e-59 234.6 413 37.8
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.1e-56 224.9 308 42.5
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 2.5e-56 223.8 377 39.3
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 5.5e-48 196.1 199 55.3
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 4.0e-46 189.9 414 35.3
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.3e-44 184.9 373 37.5
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 8.3e-44 182.2 327 38.8
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.3e-36 158.3 140 65.0
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.2e-34 151.8 128 64.8
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.2e-27 127.1 226 39.8
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-23 115.2 178 38.2
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.6e-23 113.6 180 36.7
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.1e-22 110.5 101 54.5
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 5.2e-22 109.8 197 36.5
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.4e-21 107.1 300 29.7
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 7.5e-21 105.9 436 27.5
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 3.7e-20 103.6 108 50.0
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.9e-20 103.2 101 51.5
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 3.2e-19 100.5 424 27.1
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.2e-18 98.6 419 27.2
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 6.8e-14 82.8 283 27.9
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 8.9e-14 82.4 401 24.2
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 6.4e-12 76.3 64 60.9
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 6.4e-12 76.3 98 48.0
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.4e-11 74.3 400 23.5
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.7e-09 68.2 180 28.3
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 5.1e-09 66.6 95 47.4
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 5.1e-09 66.6 95 47.4
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 8.6e-09 65.9 68 48.5
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 7.3e-08 62.8 79 45.6
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 2.4e-06 57.8 54 51.9
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 3.1e-06 57.4 65 49.2
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 3.1e-06 57.4 60 51.7
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 4.0e-06 57.0 52 53.8
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 5.2e-06 56.6 72 41.7


User provided reference genes

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