Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2107 Fragaria x ananassa HOM05D005369 ORTHO05D006955 2.4e-173 612.1 311 100.0
FvH4_4g28180 Fragaria vesca HOM05D005369 ORTHO05D006955 5.2e-168 594.3 311 97.7
FAN12G2281 Fragaria x ananassa HOM05D005369 ORTHO05D006955 5.2e-168 594.3 311 97.7
FAN22G1382 Fragaria x ananassa HOM05D005369 ORTHO05D006955 7.5e-167 590.5 311 97.1
FAN07G1070 Fragaria x ananassa HOM05D005369 ORTHO05D006955 1.1e-165 586.6 309 96.8
RcHm_v2.0_Chr4g0435941 Rosa chinensis HOM05D005369 ORTHO05D006955 3.2e-165 585.1 311 95.5
MD13G1047300 Malus domestica HOM05D005369 ORTHO05D006955 4.3e-146 521.5 309 84.1
MD16G1049100 Malus domestica HOM05D005369 ORTHO05D006955 3.6e-145 518.5 314 83.8
Prupe.1G304600 Prunus persica HOM05D005369 ORTHO05D006955 1.5e-143 513.1 312 83.0
Ca_10520_v3 Cicer arietinum L. HOM05D005369 ORTHO05D006955 1.9e-141 506.1 311 82.0
Eucgr.G02355 Eucalyptus grandis HOM05D005369 ORTHO05D006955 5.4e-141 504.6 313 81.2
Psat6g179520 Pisum sativum HOM05D005369 ORTHO05D006955 9.3e-141 503.8 311 81.7
Cpa.g.sc53.119 Carica papaya HOM05D005369 ORTHO05D006955 1.2e-140 503.4 313 80.8
CSS0041757 Camellia sinensis var. sinensis HOM05D005369 ORTHO05D006955 1.6e-140 503.1 303 83.2
TPR.G18699 Trifolium pratense HOM05D005369 ORTHO05D006955 4.6e-140 501.5 310 81.9
QL01p001045 Quercus lobata HOM05D005369 ORTHO05D006955 6.0e-140 501.1 303 83.2
Thecc.02G362000 Theobroma cacao HOM05D005369 ORTHO05D006955 1.0e-139 500.4 302 83.8
Medtr1g093770 Medicago truncatula HOM05D005369 ORTHO05D006955 3.9e-139 498.4 311 80.7
Potri.010G130300 Populus trichocarpa HOM05D005369 ORTHO05D006955 5.1e-139 498.0 314 79.9
Cfa018636 Carpinus fangiana HOM05D005369 ORTHO05D006955 8.7e-139 497.3 302 83.1
Potri.008G115700 Populus trichocarpa HOM05D005369 ORTHO05D006955 8.7e-139 497.3 312 79.8
TAR622G0781 Trochodendron aralioides HOM05D005369 ORTHO05D006955 1.1e-138 496.9 310 81.6
Atru.chr11.1367 Acer truncatum HOM05D005369 ORTHO05D006955 2.5e-138 495.7 314 79.0
FAN28G2319 Fragaria x ananassa HOM05D005369 ORTHO05D006955 2.5e-138 495.7 314 81.5
Actinidia14846 Actinidia chinensis HOM05D005369 ORTHO05D006955 3.3e-138 495.4 303 81.2
Sabra08G0087600 Salix brachista HOM05D005369 ORTHO05D006955 4.3e-138 495.0 312 79.5
Duzib251G0390 Durio zibethinus HOM05D005369 ORTHO05D006955 1.3e-137 493.4 314 79.6
Phvul.001G005600 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 1.3e-137 493.4 309 80.3
Gohir.D12G174200 Gossypium hirsutum HOM05D005369 ORTHO05D006955 1.6e-137 493.0 301 83.4
Gorai.008G186900 Gossypium raimondii HOM05D005369 ORTHO05D006955 1.6e-137 493.0 301 83.4
GSVIVG01011963001 Vitis vinifera HOM05D000398 ORTHO05D000551 1.6e-137 493.0 314 79.6
Ciclev10032187m.g Citrus clementina HOM05D005369 ORTHO05D006955 2.8e-137 492.3 311 78.8
TAR374G0397 Trochodendron aralioides HOM05D005369 ORTHO05D006955 2.8e-137 492.3 311 79.7
CiPaw.15G002800 Carya illinoinensis HOM05D005369 ORTHO05D006955 3.6e-137 491.9 302 82.5
arahy.Tifrunner.gnm1.ann1.1BLX98 Arachis hypogaea HOM05D005369 ORTHO05D006955 4.8e-137 491.5 312 79.5
arahy.Tifrunner.gnm1.ann1.DD8P8M Arachis hypogaea HOM05D005369 ORTHO05D006955 4.8e-137 491.5 312 79.5
Sed0002723 Sechium edule HOM05D005369 ORTHO05D006955 1.1e-136 490.3 309 78.6
Gohir.A12G171800 Gossypium hirsutum HOM05D005369 ORTHO05D006955 1.4e-136 490.0 301 82.7
Lalb_Chr02g0151791 Lupinus albus HOM05D005369 ORTHO05D006955 1.8e-136 489.6 312 78.8
THA.LOC104800064 Tarenaya hassleriana HOM05D005369 ORTHO05D006955 3.1e-136 488.8 302 81.8
Manes.14G096800 Manihot esculenta HOM05D005369 ORTHO05D006955 4.0e-136 488.4 295 82.4
Lj2g0009483 Lotus japonicus HOM05D005369 ORTHO05D006955 5.3e-136 488.0 310 79.0
TAR374G1244 Trochodendron aralioides HOM05D005369 ORTHO05D006955 1.5e-135 486.5 311 78.8
MELO3C012211.2 Cucumis melo HOM05D005369 ORTHO05D006955 2.0e-135 486.1 314 78.0
Hma1.2p1_0862F.1_g229880 Hydrangea macrophylla HOM05D005369 ORTHO05D006955 2.0e-135 486.1 320 76.9
VMungo1215G0010 Vigna mungo HOM05D005369 ORTHO05D006955 4.5e-135 485.0 311 79.4
COL.COLO4_07861 Corchorus olitorius HOM05D005369 ORTHO05D006955 5.8e-135 484.6 301 81.7
Phvul.003G026300 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 7.6e-135 484.2 312 79.5
CANSAT64G0649 Cannabis sativa HOM05D005369 ORTHO05D006955 1.7e-134 483.0 313 76.4
Lj3A1020T60 Lonicera japonica HOM05D005369 ORTHO05D006955 2.9e-134 482.3 299 79.9
TWI31G0309 Tripterygium wilfordii HOM05D005369 ORTHO05D006955 2.9e-134 482.3 298 82.2
CsaV3_5G033930 Cucumis sativus L. HOM05D005369 ORTHO05D006955 4.9e-134 481.5 314 77.1
Glyma.02G100900 Glycine max HOM05D005369 ORTHO05D006955 4.9e-134 481.5 297 82.2
Lalb_Chr21g0313361 Lupinus albus HOM05D005369 ORTHO05D006955 4.9e-134 481.5 312 76.6
Haze_17433 Corylus avellana HOM05D005369 ORTHO05D006955 8.4e-134 480.7 305 80.0
Rhsim09G0113000 Rhododendron simsii HOM05D005369 ORTHO05D006955 1.1e-133 480.3 313 78.6
PGR119G0805 Punica granatum HOM05D005369 ORTHO05D006955 1.4e-133 479.9 296 81.8
Duzib248G0106 Durio zibethinus HOM05D005369 ORTHO05D006955 4.2e-133 478.4 301 79.1
PSO782G4917 Papaver somniferum HOM05D005369 ORTHO05D006955 5.4e-133 478.0 309 76.7
DCAR_007223 Daucus carota HOM05D005369 ORTHO05D006955 1.6e-132 476.5 301 78.1
PSO063G4132 Papaver somniferum HOM05D005369 ORTHO05D006955 2.7e-132 475.7 309 76.4
Glyma.01G089100 Glycine max HOM05D005369 ORTHO05D006955 3.5e-132 475.3 297 81.5
Nn4g23711 Nelumbo nucifera HOM05D005369 ORTHO05D006955 3.5e-132 475.3 310 77.4
A09p39670 Brassica napus HOM05D005369 ORTHO05D006955 1.1e-130 470.3 315 76.2
BolC5t31214H Brassica oleracea HOM05D005369 ORTHO05D006955 1.9e-130 469.5 314 76.4
BraA09t39463Z Brassica rapa HOM05D005369 ORTHO05D006955 3.3e-130 468.8 314 76.1
DCAR_030087 Daucus carota HOM05D005369 ORTHO05D006955 4.3e-130 468.4 294 79.3
Cc11_g10670 Coffea canephora HOM05D005369 ORTHO05D006955 5.6e-130 468.0 293 79.9
CAN.G184.84 Capsicum annuum HOM05D005369 ORTHO05D006955 9.6e-130 467.2 298 77.9
BcaNung06366 Brassica carinata HOM05D005369 ORTHO05D006955 1.3e-129 466.8 317 76.0
CDE08G0426 Ceratophyllum demersum HOM05D005369 ORTHO05D006955 1.3e-129 466.8 299 77.6
A08p27110 Brassica napus HOM05D005369 ORTHO05D006955 2.1e-129 466.1 315 75.2
BraA08t34656Z Brassica rapa HOM05D005369 ORTHO05D006955 2.1e-129 466.1 315 75.2
C05p24850 Brassica napus HOM05D005369 ORTHO05D006955 4.8e-129 464.9 312 75.6
SalBow8G4109 Salvia bowleyana HOM05D005369 ORTHO05D006955 4.8e-129 464.9 301 76.7
BcaC05g26649 Brassica carinata HOM05D005369 ORTHO05D006955 6.2e-129 464.5 315 75.9
CDE09G0148 Ceratophyllum demersum HOM05D005369 ORTHO05D009095 6.2e-129 464.5 299 77.6
FAN26G1965 Fragaria x ananassa HOM05D005369 ORTHO05D006955 6.2e-129 464.5 281 82.6
BolC3t19573H Brassica oleracea HOM05D005369 ORTHO05D006955 6.9e-128 461.1 315 74.9
Thhalv10008252m.g Eutrema salsugineum HOM05D005369 ORTHO05D006955 1.2e-127 460.3 313 76.4
EL10Ac6g14509 Beta vulgaris HOM05D005369 ORTHO05D006955 1.5e-127 459.9 302 76.8
C03p72750 Brassica napus HOM05D005369 ORTHO05D006955 1.5e-127 459.9 315 74.6
Solyc05g009910.3 Solanum lycopersicum HOM05D005369 ORTHO05D006955 7.6e-127 457.6 299 76.6
Sopen05g005710 Solanum pennellii HOM05D005369 ORTHO05D006955 7.6e-127 457.6 299 76.6
Carub.0001s2489 Capsella rubella HOM05D005369 ORTHO05D006955 1.0e-126 457.2 315 74.9
PGSC0003DMG400000806 Solanum tuberosum HOM05D005369 ORTHO05D006955 1.7e-126 456.4 299 76.3
Nitab4.5_0011812g0010 Nicotiana tabacum HOM05D005369 ORTHO05D006955 2.2e-126 456.1 304 75.7
AUR62035293 Chenopodium quinoa HOM05D005369 ORTHO05D006955 1.1e-125 453.8 303 75.9
AL1G39700 Arabidopsis lyrata HOM05D005369 ORTHO05D006955 1.9e-125 453.0 315 74.3
Os02g0324300 Oryza sativa ssp. japonica HOM05D005369 ORTHO05D006955 1.9e-125 453.0 310 72.9
Sp1g22610 Schrenkiella parvula HOM05D005369 ORTHO05D006955 3.2e-125 452.2 313 74.1
TAR622G1222 Trochodendron aralioides HOM05D005369 ORTHO05D006955 3.2e-125 452.2 289 80.6
HPP92_005307 Vanilla planifolia HOM05D005369 ORTHO05D006955 3.2e-125 452.2 306 72.5
HanXRQChr02g0043381 Helianthus annuus HOM05D005369 ORTHO05D006955 5.5e-125 451.4 302 74.8
ECA246G2775 Erigeron canadensis HOM05D005369 ORTHO05D006955 7.1e-125 451.1 296 75.0
AT1G25682 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 9.3e-125 450.7 312 74.7
CARHR025850 Cardamine hirsuta HOM05D005369 ORTHO05D006955 6.0e-124 448.0 316 72.8
Zm00001eb431600 Zea mays HOM05D005369 ORTHO05D006955 2.3e-123 446.0 310 71.9
Aqoxy5G00581 Aquilegia oxysepala HOM05D005369 ORTHO05D006955 3.9e-123 445.3 299 75.3
AUR62002925 Chenopodium quinoa HOM05D005369 ORTHO05D006955 8.7e-123 444.1 303 75.2
MSTRG.7694 Avicennia marina HOM05D005369 ORTHO05D006955 7.4e-122 441.0 296 74.3
BcaB03g12082 Brassica carinata HOM05D005369 ORTHO05D006955 1.3e-121 440.3 315 72.7
ATR0681G333 Amborella trichopoda HOM05D005369 ORTHO05D006955 8.2e-121 437.6 310 70.3
vmacro11462 Vaccinium macrocarpon HOM05D005369 ORTHO05D006955 1.1e-120 437.2 301 74.1
Peaxi162Scf00367g00088 Petunia axillaris HOM05D005369 ORTHO05D006955 4.0e-120 435.3 298 73.5
SGA_v2.0_scaffold16G07883 Striga asiatica HOM05D005369 ORTHO05D006955 2.0e-119 433.0 295 71.5
Lsat_1_v5_gn_3_58161 Lactuca sativa HOM05D005369 ORTHO05D006955 4.5e-119 431.8 297 73.1
Actinidia16612 Actinidia chinensis HOM05D005369 ORTHO05D006955 4.9e-118 428.3 316 70.6
Ah.03g137930 Amaranthus hybridus HOM05D005369 ORTHO05D006955 4.9e-118 428.3 290 75.2
SEGI_22738 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 4.2e-117 425.2 312 70.2
Aa31LG7G8920 Aethionema arabicum HOM05D005369 ORTHO05D006955 2.7e-116 422.5 301 71.4
unitig_744.g24076 Utricularia gibba HOM05D005369 ORTHO05D006955 3.5e-116 422.2 305 70.8
Nitab4.5_0005803g0060 Nicotiana tabacum HOM05D005369 ORTHO05D006955 3.9e-115 418.7 275 76.0
Migut.L01099 Erythranthe guttata HOM05D005369 ORTHO05D006955 5.3e-112 408.3 305 69.5
AagrBONN_evm.TU.Sc2ySwM_362.2009 Anthoceros agrestis HOM05D005369 ORTHO05D006955 3.3e-106 389.0 307 65.5
Hund05770 Selenicereus undatus HOM05D005369 ORTHO05D006955 3.3e-106 389.0 229 81.2
Mapoly0084s0019 Marchantia polymorpha HOM05D005369 ORTHO05D006955 8.2e-105 384.4 303 65.3
Pp3c18_5500 Physcomitrium patens HOM05D005369 ORTHO05D006955 2.6e-103 379.4 300 63.7
Dinv05803 Davidia involucrata HOM05D005369 ORTHO05D006955 1.2e-100 370.5 210 84.3
SMO353G0425 Selaginella moellendorffii HOM05D005369 ORTHO05D006955 1.2e-100 370.5 295 64.4
FAN19G0967 Fragaria x ananassa HOM05D002945 ORTHO05D003314 1.6e-100 370.2 295 68.5
ClCG05G023060 Citrullus lanatus HOM05D005369 ORTHO05D006955 1.5e-95 353.6 314 61.8
FAN23G0001 Fragaria x ananassa HOM05D002945 ORTHO05D003314 1.8e-91 340.1 193 81.9
CBR_g16048 Chara braunii HOM05D005369 ORTHO05D006955 8.8e-83 311.2 327 51.7
FvH4_1g20000 Fragaria vesca HOM05D005369 ORTHO05D006955 3.4e-82 309.3 263 65.8
Sc11g0003050 Simmondsia chinensis HOM05D005369 ORTHO05D006955 1.4e-75 287.3 216 70.8
Sabra10G0099400 Salix brachista HOM05D005369 ORTHO05D006955 1.2e-71 274.2 240 62.1
Dinv16512 Davidia involucrata HOM05D005369 ORTHO05D006955 2.5e-69 266.5 138 87.0
Cre02.g082050 Chlamydomonas reinhardtii HOM05D005369 ORTHO05D006955 2.9e-57 226.5 265 50.2
HanXRQChr17g0551311 Helianthus annuus HOM05D005369 ORTHO05D006955 4.7e-44 182.6 125 72.0
MCO09G730 Micromonas commoda HOM05D005369 ORTHO05D006955 6.2e-44 182.2 250 41.6
Haze_27439 Corylus avellana HOM05D005369 ORTHO05D002042 6.4e-41 172.2 233 39.1
SEGI_28822 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 6.0e-31 139.0 224 38.4
HanXRQChr14g0430991 Helianthus annuus HOM05D005369 ORTHO05D006955 2.2e-25 120.6 135 54.1
AT1G25988 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 7.1e-24 115.5 78 71.8
CAN.G216.8 Capsicum annuum HOM05D005369 ORTHO05D006955 1.1e-19 101.7 105 58.1
Medtr3g101280 Medicago truncatula HOM05D005369 ORTHO05D039022 1.0e-14 85.1 54 70.4
EL10Ac6g14510 Beta vulgaris HOM05D005369 ORTHO05D039022 1.5e-13 81.3 40 85.0
Cfa025377 Carpinus fangiana HOM05D005369 ORTHO05D006955 3.3e-13 80.1 203 31.0
Lsat_1_v5_gn_6_27721 Lactuca sativa HOM05D005369 ORTHO05D006955 2.1e-12 77.4 69 58.0
BcaB02g10247 Brassica carinata HOM05D002017 ORTHO05D002042 4.0e-11 73.2 109 36.7
Zm00001eb014670 Zea mays HOM05D005369 ORTHO05D006955 9.0e-11 72.0 44 72.7
SalBow1G2449 Salvia bowleyana HOM05D001761 ORTHO05D001719 7.6e-10 68.9 50 64.0
HanXRQChr03g0063441 Helianthus annuus HOM05D005369 ORTHO05D006955 1.1e-08 65.1 55 63.6
Aqoxy1G01806 Aquilegia oxysepala HOM05D002017 ORTHO05D002042 2.5e-08 63.9 115 31.3
Aqoxy1G01830 Aquilegia oxysepala HOM05D002017 ORTHO05D002042 2.5e-08 63.9 115 31.3
Aqoxy1G01832 Aquilegia oxysepala HOM05D002017 ORTHO05D002042 2.5e-08 63.9 115 31.3
Atru.chr3.3953 Acer truncatum HOM05D002017 ORTHO05D002042 7.1e-08 62.4 189 28.0
Atru.chr2.3694 Acer truncatum HOM05D002017 ORTHO05D002042 2.1e-07 60.8 110 31.8
BolC9t57869H Brassica oleracea HOM05D002017 ORTHO05D002042 3.5e-07 60.1 269 25.7
AT2G32050 Arabidopsis thaliana HOM05D002017 ORTHO05D002042 3.9e-06 56.6 277 23.8
A04p18860 Brassica napus HOM05D002017 ORTHO05D002042 3.9e-06 56.6 70 35.7
C04p48730 Brassica napus HOM05D002017 ORTHO05D002042 6.7e-06 55.8 70 34.3


User provided reference genes

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