Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.5e-203 711.8 490 100.0
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.2e-154 548.5 377 88.6
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 4.1e-151 538.9 497 80.3
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.6e-147 526.9 488 74.2
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-146 523.5 494 75.3
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.5e-145 518.1 497 78.5
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.0e-143 511.5 488 72.7
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 5.2e-138 495.4 488 74.2
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.2e-138 495.4 488 74.0
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.7e-136 489.2 488 73.8
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.5e-129 467.2 494 69.4
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 3.6e-107 392.9 308 70.5
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 4.7e-107 392.5 323 69.0
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 7.5e-44 182.6 390 47.2
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.6e-41 174.9 333 40.8
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 2.0e-41 174.5 321 41.1
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 2.9e-40 170.6 274 47.1
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 3.2e-39 167.2 339 40.1
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 1.2e-38 165.2 261 45.6
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 2.1e-38 164.5 283 47.0
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.0e-37 160.2 252 46.4
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 6.8e-37 159.5 293 43.7
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.2e-36 158.7 252 46.4
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.5e-36 158.3 285 42.1
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.2e-35 154.5 252 45.6
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 2.4e-34 151.0 239 47.3
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 2.4e-34 151.0 276 46.7
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 5.4e-34 149.8 353 38.2
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.0e-33 147.9 268 42.9
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.7e-33 147.5 272 41.2
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 3.5e-33 147.1 293 45.4
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.0e-32 145.6 323 38.4
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.2e-32 144.4 274 46.0
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.5e-31 141.7 266 42.1
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 4.2e-31 140.2 272 44.9
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 4.7e-30 136.7 219 43.4
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 5.2e-29 133.3 322 37.3
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 1.2e-28 132.1 237 49.4
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.5e-28 131.7 247 42.5
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.0e-28 131.3 256 40.6
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 2.6e-28 131.0 315 37.1
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 2.6e-28 131.0 256 40.2
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 4.4e-28 130.2 324 38.0
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 6.3e-27 126.3 311 39.9
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 7.0e-26 122.9 300 40.7
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 9.2e-26 122.5 225 40.9
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 7.7e-25 119.4 328 38.1
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.0e-24 119.0 373 32.7
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 2.3e-24 117.9 322 37.3
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 6.6e-24 116.3 332 34.9
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 1.9e-23 114.8 314 36.3
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 3.3e-23 114.0 293 35.5
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 4.3e-23 113.6 361 35.7
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 7.3e-23 112.8 297 38.4
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 7.3e-23 112.8 323 37.8
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.6e-22 111.7 343 35.0
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 4.7e-22 110.2 339 32.4
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 8.0e-22 109.4 320 34.4
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 8.0e-22 109.4 245 38.4
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.4e-21 108.6 139 41.7
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 2.3e-21 107.8 264 37.5
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 4.0e-21 107.1 213 39.4
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 4.0e-21 107.1 303 40.3
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 6.8e-21 106.3 235 36.2
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.2e-20 105.5 329 35.3
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 2.0e-20 104.8 246 37.8
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 2.6e-20 104.4 269 36.4
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.4e-20 104.0 303 36.0
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.4e-20 104.0 303 36.0
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 3.4e-20 104.0 242 38.4
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 2.2e-19 101.3 202 41.6
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 3.7e-19 100.5 291 36.1
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 6.4e-19 99.8 249 40.2
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 1.4e-18 98.6 242 36.4
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 1.4e-18 98.6 242 36.4
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 5.4e-18 96.7 182 40.1
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 7.0e-18 96.3 247 38.9
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.6e-17 95.1 297 33.0
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 2.0e-17 94.7 285 34.7
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 4.6e-17 93.6 331 32.0
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 5.9e-17 93.2 246 35.4
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 7.8e-17 92.8 305 33.8
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.3e-16 92.0 247 36.0
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.3e-16 92.0 331 34.1
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.7e-16 91.7 323 32.5
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 3.9e-16 90.5 279 33.0
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 3.9e-16 90.5 268 34.0
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 3.9e-16 90.5 324 32.4
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 5.0e-16 90.1 176 38.6
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 5.0e-16 90.1 241 35.7
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 5.0e-16 90.1 285 33.3
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 5.0e-16 90.1 246 37.8
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 8.6e-16 89.4 176 38.1
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 8.6e-16 89.4 285 31.6
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 1.1e-15 89.0 242 39.3
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 2.5e-15 87.8 285 31.9
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 3.3e-15 87.4 285 31.6
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 3.3e-15 87.4 257 34.2
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 3.3e-15 87.4 276 36.2
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 4.3e-15 87.0 249 33.3
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 7.3e-15 86.3 256 34.8
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 1.2e-14 85.5 296 33.8
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 1.2e-14 85.5 261 34.5
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.6e-14 84.0 288 33.3
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 4.7e-14 83.6 231 34.6
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 6.2e-14 83.2 316 30.4
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 6.2e-14 83.2 130 41.5
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 3.1e-13 80.9 258 32.2
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 3.1e-13 80.9 299 33.1
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 6.8e-13 79.7 309 34.0
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 6.8e-13 79.7 229 34.1
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 1.2e-12 79.0 304 30.6
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.6e-12 77.8 340 31.2
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 3.4e-12 77.4 143 40.6
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 4.4e-12 77.0 273 30.4
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 7.5e-12 76.3 287 35.9
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 9.8e-12 75.9 271 29.5
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 6.4e-11 73.2 126 40.5
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 8.3e-11 72.8 135 37.8
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 1.1e-10 72.4 252 34.5
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 1.9e-10 71.6 220 28.2
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.6e-09 68.6 319 31.0
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.7e-09 67.8 319 31.0
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.6e-09 67.0 153 34.6
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 7.8e-09 66.2 305 29.8
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 1.3e-08 65.5 300 31.7
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 3.9e-08 63.9 274 31.0
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 6.6e-08 63.2 268 29.9
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 6.6e-08 63.2 268 29.9
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 8.6e-08 62.8 210 32.4
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 8.6e-08 62.8 311 27.7
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 1.5e-07 62.0 289 31.1
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 3.3e-07 60.8 147 30.6
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 4.3e-07 60.5 254 29.1
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 7.3e-07 59.7 296 28.0
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 7.3e-07 59.7 141 33.3
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 7.3e-07 59.7 260 29.6
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 1.2e-06 58.9 248 28.2
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 1.2e-06 58.9 47 63.8
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.6e-06 58.5 334 28.1
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.1e-06 58.2 285 26.3
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 2.8e-06 57.8 179 30.2
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 4.7e-06 57.0 269 28.3
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 6.2e-06 56.6 140 30.0
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 6.2e-06 56.6 170 31.2
Sc23g0001950 Simmondsia chinensis HOM05D004242 ORTHO05D004349 8.1e-06 56.2 172 37.8


User provided reference genes

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