Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 2122.8 1123 100.0
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 2103.9 1123 98.8
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 2098.9 1123 98.5
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 2097.4 1123 98.5
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 2015.0 1126 94.1
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1907.1 1130 86.4
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1887.5 1127 85.4
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1799.3 1129 81.5
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1798.1 1134 80.6
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1791.9 1127 82.0
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1791.2 1139 80.8
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1776.5 1139 78.8
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1775.8 1140 78.9
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1768.4 1138 79.3
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1768.4 1141 78.7
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1763.8 1123 79.6
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1756.9 1132 79.2
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1748.4 1127 78.3
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1748.0 1133 78.6
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1746.5 1130 78.8
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1741.9 1140 78.1
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1741.1 1130 78.7
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1739.5 1128 78.9
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1737.2 1128 78.7
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1728.0 1127 77.2
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1724.9 1127 78.2
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1719.5 1131 77.2
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1717.2 1142 77.3
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1714.5 1131 77.0
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1714.5 1127 77.9
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1709.5 1130 76.7
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1709.1 1124 77.3
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1708.0 1125 77.9
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1707.2 1134 78.6
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1704.1 1124 76.2
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1699.5 1124 76.0
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1696.4 1135 76.8
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1695.2 1127 76.6
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1695.2 1176 74.2
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1690.6 1130 76.3
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1681.4 1104 77.7
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1680.2 1132 75.7
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1675.2 1133 76.6
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1672.9 1124 75.4
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1662.9 1133 74.5
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1648.3 1123 73.6
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1647.9 1128 74.8
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1642.1 1125 74.6
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1634.0 1124 73.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1632.8 1132 71.6
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1632.8 1129 73.0
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1626.3 1135 73.1
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1618.6 1127 73.0
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1618.6 1134 73.0
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1617.4 1137 72.2
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1611.7 1139 72.7
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1608.6 1135 71.3
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1606.3 1127 72.6
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1601.3 1130 72.9
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1593.6 1131 71.9
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1592.4 1132 71.8
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1592.0 1125 71.3
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1591.6 1128 72.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1589.7 1132 71.1
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1589.3 1129 72.3
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1588.9 1126 71.0
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1588.5 1027 77.8
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1587.0 1127 71.3
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1585.5 1132 71.1
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1585.5 1134 71.4
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1583.5 1134 71.3
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1583.2 1131 71.3
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1581.6 1134 71.2
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1580.8 1134 71.3
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1579.3 1125 70.9
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1578.9 1123 71.5
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1578.5 1135 71.6
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1578.5 1137 70.3
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1578.1 1147 71.1
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1578.1 1147 71.1
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1575.1 1010 80.0
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1573.5 1126 71.3
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1566.6 1126 71.4
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1566.2 1127 70.4
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1563.9 1126 71.0
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1562.0 1096 72.5
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1561.6 1128 70.1
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1560.0 1128 70.1
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1552.3 1130 69.6
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1551.2 1137 70.4
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1546.6 1127 69.7
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1522.3 1077 71.7
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1509.2 1071 71.8
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1494.6 1032 72.6
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1493.0 921 80.3
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1457.2 1128 67.8
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1441.4 1150 65.7
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1429.5 1125 66.6
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1419.1 926 77.0
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1374.8 1096 65.4
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1371.7 1117 62.9
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1326.6 1087 60.3
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1316.6 1096 61.1
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1310.0 890 73.5
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1287.3 883 73.0
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1219.5 822 77.0
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1122.5 790 73.5
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1118.6 931 62.1
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1088.9 1071 52.5
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.3e-309 1066.6 1087 50.3
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.8e-298 1029.6 1064 50.6
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 3.0e-298 1028.9 1073 49.2
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 6.7e-298 1027.7 669 76.8
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.5e-289 1000.0 760 66.3
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 3.5e-246 855.9 600 73.7
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.9e-244 850.1 929 52.2
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.7e-213 747.3 1091 40.7
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.1e-212 744.6 634 60.7
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.1e-183 648.3 377 87.8
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.5e-153 548.1 421 70.1
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 1.4e-141 508.4 432 65.0
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 5.0e-120 436.8 354 61.3
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.7e-99 368.6 1209 28.4
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 9.2e-98 362.8 316 62.7
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.1e-94 351.7 313 61.3
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.6e-86 324.3 334 59.9
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.8e-85 322.0 1150 27.3
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.7e-83 315.5 364 46.7
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 7.6e-68 263.5 326 48.2
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.1e-61 243.0 319 48.6
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 3.0e-40 171.8 111 82.9
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.5e-31 142.9 150 58.0
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 9.7e-31 140.2 86 87.2
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 2.2e-30 139.0 643 22.9
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 8.2e-30 137.1 86 86.0
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 7.0e-29 134.0 69 89.9
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-28 132.9 68 89.7
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 2.0e-28 132.5 147 55.8
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 6.1e-09 67.8 45 88.9
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 4.0e-08 65.1 79 54.4
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 5.2e-08 64.7 80 46.2


User provided reference genes

Program Settings