Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.0e-60 235.0 117 100.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.8e-58 228.4 117 97.4
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.8e-57 225.7 120 95.8
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.4e-57 225.3 120 95.8
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 4.1e-49 198.0 120 84.2
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.0e-36 156.8 117 71.8
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 9.8e-35 150.2 114 69.3
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 2.7e-32 142.1 119 69.7
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.0e-31 140.2 84 84.5
FAN17G0281 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.9e-28 127.1 89 75.3
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 1.2e-27 126.7 84 78.6
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.2e-24 116.7 119 58.8
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.5e-22 109.0 125 59.2
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 7.3e-22 107.5 128 58.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 2.8e-21 105.5 108 55.6
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 4.7e-21 104.8 118 50.8
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 6.2e-21 104.4 113 57.5
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 6.2e-21 104.4 110 55.5
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 4.0e-20 101.7 130 56.2
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 4.0e-20 101.7 110 51.8
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 6.8e-20 100.9 110 56.4
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 6.8e-20 100.9 110 55.5
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 8.9e-20 100.5 119 57.1
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 4.4e-19 98.2 116 56.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 9.8e-19 97.1 106 56.6
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 9.8e-19 97.1 110 55.5
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.3e-18 96.7 118 52.5
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.7e-18 96.3 121 52.9
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.7e-18 96.3 115 51.3
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.7e-18 96.3 108 53.7
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.2e-18 95.9 114 56.1
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.9e-18 95.5 115 53.0
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 3.7e-18 95.1 121 51.2
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 3.7e-18 95.1 108 52.8
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 3.7e-18 95.1 108 52.8
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 6.4e-18 94.4 119 50.4
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 6.4e-18 94.4 121 50.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 6.4e-18 94.4 110 55.5
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 8.3e-18 94.0 108 56.5
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-17 93.2 113 54.9
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-17 93.2 113 54.9
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.2e-17 92.0 118 52.5
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.2e-17 92.0 114 51.8
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 3.2e-17 92.0 108 52.8
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.4e-17 91.3 114 51.8
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 5.4e-17 91.3 115 53.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.0e-17 90.9 114 50.9
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 9.2e-17 90.5 114 50.9
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.6e-16 89.7 114 52.6
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.6e-16 89.7 111 55.9
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.7e-16 89.0 117 53.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.7e-16 89.0 111 54.1
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 6.0e-16 87.8 116 48.3
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 6.0e-16 87.8 116 48.3
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 7.8e-16 87.4 107 50.5
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.0e-15 87.0 114 52.6
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.7e-15 86.3 119 51.3
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-15 86.3 113 52.2
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.7e-15 86.3 108 52.8
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.7e-15 86.3 119 49.6
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 1.7e-15 86.3 106 48.1
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 2.3e-15 85.9 102 48.0
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.3e-15 85.9 110 50.0
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.3e-15 85.9 126 50.8
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 3.0e-15 85.5 108 52.8
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.0e-15 85.5 106 50.0
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.9e-15 85.1 121 48.8
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 3.9e-15 85.1 122 46.7
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 5.1e-15 84.7 111 52.3
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.6e-15 84.0 121 47.1
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.6e-15 84.0 121 47.9
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.1e-14 83.6 114 47.4
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.1e-14 83.6 106 47.2
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.1e-14 83.6 111 47.7
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.1e-14 83.6 107 52.3
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.5e-14 83.2 115 49.6
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.9e-14 82.8 116 50.0
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.3e-14 82.0 108 46.3
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 4.3e-14 81.6 111 48.6
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.3e-14 81.6 114 50.0
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 4.3e-14 81.6 120 51.7
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 5.6e-14 81.3 105 53.3
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 5.6e-14 81.3 107 53.3
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.6e-14 81.3 116 48.3
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 7.3e-14 80.9 114 44.7
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 7.3e-14 80.9 129 50.4
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 7.3e-14 80.9 106 47.2
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 9.5e-14 80.5 103 50.5
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 9.5e-14 80.5 109 47.7
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.5e-14 80.5 125 44.8
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.6e-13 79.7 106 46.2
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.6e-13 79.7 102 51.0
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.6e-13 79.7 107 49.5
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.6e-13 79.7 110 50.0
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.1e-13 79.3 100 52.0
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.1e-13 79.3 103 46.6
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 2.8e-13 79.0 111 47.7
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.8e-13 79.0 113 45.1
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.8e-13 79.0 112 49.1
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.8e-13 79.0 102 50.0
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.6e-13 78.6 107 46.7
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.6e-13 78.6 104 51.0
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.7e-13 78.2 107 46.7
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 4.7e-13 78.2 127 48.8
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.7e-13 78.2 129 45.0
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 6.2e-13 77.8 103 51.5
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 6.2e-13 77.8 102 45.1
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-12 77.0 111 47.7
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 1.1e-12 77.0 106 48.1
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.4e-12 76.6 114 46.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.8e-12 76.3 111 47.7
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.3e-12 75.9 102 52.9
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.3e-12 75.9 111 45.9
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.3e-12 75.9 109 45.0
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.3e-12 75.9 109 45.9
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 4.0e-12 75.1 131 45.8
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.0e-12 75.1 102 46.1
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 5.2e-12 74.7 102 45.1
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 5.2e-12 74.7 111 45.9
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 5.2e-12 74.7 102 45.1
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 6.8e-12 74.3 102 49.0
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 6.8e-12 74.3 102 45.1
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.8e-12 74.3 117 45.3
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.9e-12 73.9 102 52.0
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 8.9e-12 73.9 115 47.8
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.9e-12 73.9 103 50.5
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.2e-11 73.6 103 50.5
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.2e-11 73.6 106 46.2
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-11 73.6 117 43.6
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.2e-11 73.6 113 42.5
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-11 73.2 107 43.9
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.0e-11 72.8 102 44.1
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 2.0e-11 72.8 122 45.9
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 2.0e-11 72.8 97 47.4
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.6e-11 72.4 113 47.8
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 2.6e-11 72.4 120 43.3
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.6e-11 72.4 115 49.6
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.4e-11 71.6 112 45.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.8e-11 71.2 115 45.2
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 7.5e-11 70.9 110 41.8
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 7.5e-11 70.9 111 41.4
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 9.9e-11 70.5 103 46.6
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.3e-10 70.1 117 44.4
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.7e-10 69.7 105 45.7
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.2e-10 69.3 109 47.7
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.9e-10 68.9 108 43.5
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 2.9e-10 68.9 103 46.6
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 2.9e-10 68.9 103 46.6
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.9e-10 68.9 118 40.7
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 3.7e-10 68.6 118 40.7
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.9e-10 68.2 107 44.9
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 4.9e-10 68.2 123 47.2
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 6.4e-10 67.8 118 39.8
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.4e-10 67.8 132 43.2
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.4e-10 67.8 132 43.2
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.1e-09 67.0 111 41.4
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.1e-09 67.0 118 39.0
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.1e-09 67.0 111 45.9
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.9e-09 66.2 130 43.1
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 2.4e-09 65.9 115 41.7
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 5.4e-09 64.7 117 39.3
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 5.4e-09 64.7 117 39.3
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 5.4e-09 64.7 117 39.3
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 5.4e-09 64.7 103 43.7
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 9.2e-09 63.9 118 44.9
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 9.2e-09 63.9 116 44.0
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.2e-09 63.9 107 41.1
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.6e-08 63.2 107 42.1
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.5e-08 62.0 134 41.8
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.6e-08 61.6 99 41.4
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 7.8e-08 60.8 128 41.4
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 2.3e-07 59.3 109 39.4
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.1e-06 57.0 117 36.8
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 3.3e-06 55.5 112 42.0
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.3e-06 55.1 50 64.0
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 9.5e-06 53.9 93 41.9


User provided reference genes

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