Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 0.0e+00 1606.7 811 100.0
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 0.0e+00 1593.9 833 97.4
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 0.0e+00 1397.1 768 92.8
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 0.0e+00 1370.9 885 82.3
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 0.0e+00 1187.9 772 80.4
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 1.3e-213 747.3 781 57.0
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 3.3e-206 722.6 780 55.0
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 1.0e-162 578.2 800 46.2
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 1.7e-162 577.4 800 46.4
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 2.4e-148 530.4 801 44.6
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 5.8e-126 456.1 783 40.9
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 1.4e-116 424.9 789 39.2
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 4.2e-116 423.3 562 48.8
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 7.8e-115 419.1 776 39.7
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 6.6e-114 416.0 787 40.0
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 8.7e-114 415.6 786 39.6
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 3.3e-113 413.7 788 39.3
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 1.2e-110 405.2 878 35.5
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 3.4e-110 403.7 787 39.6
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 1.4e-108 398.3 785 39.1
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.7e-106 391.3 770 38.1
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 2.3e-106 391.0 770 38.1
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.8e-103 381.3 769 37.2
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 6.9e-103 379.4 780 36.4
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 2.0e-102 377.9 778 36.5
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 1.4e-100 371.7 815 36.4
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 5.4e-100 369.8 786 36.4
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 9.3e-100 369.0 809 38.2
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 7.9e-99 365.9 775 36.9
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 4.5e-94 350.1 793 35.2
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 4.9e-93 346.7 848 35.0
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 3.5e-91 340.5 778 36.8
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 2.3e-90 337.8 772 36.5
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 9.6e-89 332.4 677 36.5
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 4.8e-88 330.1 708 36.6
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 1.5e-86 325.1 754 34.6
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 1.3e-85 322.0 805 35.0
Glyma.20G076700 Glycine max HOM05D005405 ORTHO05D006333 1.4e-84 318.5 807 34.8
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 1.9e-84 318.2 655 36.8
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 1.2e-83 315.5 699 35.9
Psat6g048040 Pisum sativum HOM05D005405 ORTHO05D006333 2.3e-82 311.2 709 34.3
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 1.9e-81 308.1 765 34.5
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 2.5e-81 307.8 787 33.4
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 2.5e-81 307.8 711 34.5
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 3.3e-81 307.4 778 33.8
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 4.3e-81 307.0 775 34.2
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 7.4e-81 306.2 812 33.4
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 3.4e-78 297.4 781 34.6
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 3.4e-78 297.4 807 33.2
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 3.8e-77 293.9 681 34.4
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.9e-76 291.6 875 31.7
Gohir.A10G121500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 3.2e-76 290.8 856 31.9
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 4.2e-76 290.4 802 32.5
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 2.1e-75 288.1 875 31.4
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 2.7e-75 287.7 800 33.2
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 5.1e-74 283.5 850 31.8
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 1.3e-72 278.9 694 34.3
Gorai.006G220000 Gossypium raimondii HOM05D005405 ORTHO05D006333 3.7e-72 277.3 812 32.5
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 8.2e-72 276.2 785 31.2
Gohir.D09G196500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.4e-71 275.4 812 32.3
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 4.1e-71 273.9 709 34.3
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 1.5e-70 271.9 563 37.1
VMungo0720G2049 Vigna mungo HOM05D005405 ORTHO05D006333 2.6e-70 271.2 726 32.4
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 3.4e-70 270.8 719 34.1
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 1.3e-69 268.9 786 32.4
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 6.5e-69 266.5 789 32.6
Phvul.007G236500 Phaseolus vulgaris HOM05D005405 ORTHO05D006333 5.5e-68 263.5 702 33.8
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 2.7e-67 261.2 793 32.2
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 4.7e-67 260.4 639 34.7
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 1.0e-66 259.2 776 29.4
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 1.4e-66 258.8 788 32.0
Ciclev10004706m.g Citrus clementina HOM05D005405 ORTHO05D006333 5.7e-65 253.4 603 34.0
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 5.7e-65 253.4 827 30.2
PGSC0003DMG400029647 Solanum tuberosum HOM05D005405 ORTHO05D006333 9.7e-65 252.7 763 31.8
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 2.2e-64 251.5 783 30.8
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 2.4e-63 248.1 421 41.1
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.9e-61 241.1 696 32.0
CSS0015206 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.2e-56 224.9 602 33.4
CSS0036421 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.8e-56 224.6 603 33.5
RhsimUnG0181000 Rhododendron simsii HOM05D005405 ORTHO05D006333 3.7e-56 224.2 645 31.9
RhsimUnG0135700 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.1e-55 222.6 675 31.7
THA.LOC104801040 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 1.2e-54 219.2 556 34.5
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 1.5e-52 212.2 786 30.4
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 8.0e-51 206.5 764 31.0
BolC5t29078H Brassica oleracea HOM05D005405 ORTHO05D006333 5.2e-50 203.8 532 32.0
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 8.8e-50 203.0 582 31.1
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 1.5e-49 202.2 532 33.3
C05p02970 Brassica napus HOM05D005405 ORTHO05D006333 2.0e-49 201.8 587 31.0
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 4.4e-49 200.7 781 29.4
AUR62025677 Chenopodium quinoa HOM05D005405 ORTHO05D006333 4.4e-49 200.7 577 31.5
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 9.8e-49 199.5 524 33.6
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 1.3e-48 199.1 518 31.9
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 4.8e-48 197.2 531 34.1
BcaB02g06900 Brassica carinata HOM05D005405 ORTHO05D006333 8.3e-48 196.4 522 33.0
Carub.0001s0404 Capsella rubella HOM05D005405 ORTHO05D006333 2.9e-45 188.0 700 29.3
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 3.8e-45 187.6 699 29.8
AL1G14510 Arabidopsis lyrata HOM05D005405 ORTHO05D006333 5.0e-45 187.2 522 32.8
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 5.0e-45 187.2 520 33.1
CSS0016720 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 6.5e-45 186.8 169 59.8
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 6.5e-45 186.8 781 27.7
A10p03220 Brassica napus HOM05D005405 ORTHO05D006333 5.5e-44 183.7 585 29.7
CARHR004180 Cardamine hirsuta HOM05D005405 ORTHO05D006333 2.1e-43 181.8 526 31.4
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 2.1e-43 181.8 228 49.1
Aa31LG1G20100 Aethionema arabicum HOM05D005405 ORTHO05D006333 1.4e-42 179.1 839 27.7
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 1.8e-42 178.7 582 30.8
GSVIVG01029065001 Vitis vinifera HOM05D005405 ORTHO05D006333 1.8e-42 178.7 395 35.2
Ah.08g218040 Amaranthus hybridus HOM05D005405 ORTHO05D006333 7.5e-41 173.3 765 28.2
SGA_v2.0_scaffold2G00820 Striga asiatica HOM05D005405 ORTHO05D006333 8.3e-40 169.9 425 33.9
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 1.8e-39 168.7 272 44.9
HPP92_022603 Vanilla planifolia HOM05D006987 ORTHO05D000525 3.1e-39 167.9 503 32.8
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 1.2e-35 156.0 374 34.2
Hund05655 Selenicereus undatus HOM05D005405 ORTHO05D006333 3.6e-35 154.5 471 31.0
Zm00001eb426420 Zea mays HOM05D005405 ORTHO05D006333 1.4e-34 152.5 496 28.4
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 2.3e-34 151.8 633 27.6
Ciclev10006228m.g Citrus clementina HOM05D005405 ORTHO05D006333 1.5e-33 149.1 104 72.1
Os04g0511600 Oryza sativa ssp. japonica HOM05D005405 ORTHO05D006333 1.2e-30 139.4 811 27.1
CDE02G4244 Ceratophyllum demersum HOM05D005405 ORTHO05D006333 1.3e-29 136.0 172 47.1
SEGI_12739 Sequoiadendron giganteum HOM05D005405 ORTHO05D006333 1.8e-26 125.6 558 27.2
ECA248G0186 Erigeron canadensis HOM05D005405 ORTHO05D006333 4.0e-26 124.4 528 27.1
Sc13g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 4.6e-22 110.9 441 27.4
Cpa.g.sc59.100 Carica papaya HOM05D005405 ORTHO05D006333 6.0e-22 110.5 344 31.4
Sc22g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 6.0e-22 110.5 441 27.9
FAN22G0050 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.7e-21 109.0 56 96.4
Rhsim02G0140000 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.1e-20 106.3 563 26.5
Zm00001eb157090 Zea mays HOM05D029717 ORTHO05D006333 3.3e-20 104.8 267 33.3
Mapoly0116s0016 Marchantia polymorpha HOM05D005405 ORTHO05D006333 6.2e-19 100.5 247 34.0
Pp3c2_17560 Physcomitrium patens HOM05D005405 ORTHO05D006333 6.8e-18 97.1 262 33.2
HPP92_007064 Vanilla planifolia HOM05D005405 ORTHO05D006333 4.4e-17 94.4 231 30.7
CSS0040970 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 8.3e-16 90.1 135 45.2
Lj3C583T4 Lonicera japonica HOM05D005405 ORTHO05D006333 1.2e-14 86.3 441 26.5
SMO169G0140 Selaginella moellendorffii HOM05D005405 ORTHO05D006333 7.8e-14 83.6 226 35.0
Zm00001eb360110 Zea mays HOM05D029717 ORTHO05D006333 1.0e-13 83.2 247 32.8
CSS0020692 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.3e-13 82.8 57 70.2
CSS0029812 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.3e-13 82.8 57 70.2
GSVIVG01029064001 Vitis vinifera HOM05D005405 ORTHO05D006333 5.8e-09 67.4 87 49.4
Cre01.g051700 Chlamydomonas reinhardtii HOM05D005405 ORTHO05D003830 9.9e-09 66.6 88 37.5
PRCOL_00004693 Prasinoderma coloniale HOM05D005405 ORTHO05D006333 3.7e-08 64.7 71 50.7
Nn1g05672 Nelumbo nucifera HOM05D005405 ORTHO05D006333 6.4e-08 63.9 35 74.3
BcaC07g39879 Brassica carinata HOM05D003544 ORTHO05D003830 4.6e-06 57.8 115 33.0
C08p30840 Brassica napus HOM05D003544 ORTHO05D003830 4.6e-06 57.8 115 33.0


User provided reference genes

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