Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 8.1e-41 169.9 79 100.0
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 7.3e-26 120.2 57 98.2
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 7.3e-26 120.2 57 98.2
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 7.3e-26 120.2 57 98.2
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 9.6e-26 119.8 56 100.0
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 9.6e-26 119.8 56 100.0
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.2e-25 119.4 56 98.2
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.1e-24 116.3 56 98.2
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.1e-24 116.3 57 89.5
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 1.1e-24 116.3 57 89.5
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 1.8e-24 115.5 57 93.0
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 3.1e-24 114.8 57 87.7
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 3.1e-24 114.8 57 87.7
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 3.1e-24 114.8 57 86.0
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 5.2e-24 114.0 56 89.3
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 6.9e-24 113.6 56 89.3
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 6.9e-24 113.6 56 89.3
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 9.0e-24 113.2 69 71.0
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 9.0e-24 113.2 57 84.2
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 9.0e-24 113.2 69 71.0
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 9.0e-24 113.2 57 86.0
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 1.2e-23 112.8 57 86.0
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 1.2e-23 112.8 59 83.1
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 1.2e-23 112.8 57 86.0
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.2e-23 112.8 58 84.5
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 1.5e-23 112.5 57 86.0
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 1.5e-23 112.5 69 69.6
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 1.5e-23 112.5 57 84.2
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.5e-23 112.5 57 86.0
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 2.0e-23 112.1 69 72.5
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 2.0e-23 112.1 57 82.5
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 2.6e-23 111.7 57 86.0
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 4.4e-23 110.9 62 79.0
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 4.4e-23 110.9 57 78.9
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 5.8e-23 110.5 56 85.7
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 7.6e-23 110.2 57 80.7
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 7.6e-23 110.2 57 78.9
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 9.9e-23 109.8 56 80.4
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 1.3e-22 109.4 69 66.7
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 1.3e-22 109.4 56 80.4
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 1.3e-22 109.4 56 80.4
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 1.3e-22 109.4 56 80.4
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 1.3e-22 109.4 57 80.7
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.3e-22 109.4 57 86.0
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 1.3e-22 109.4 57 80.7
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 1.3e-22 109.4 57 84.2
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 1.7e-22 109.0 57 78.9
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 1.7e-22 109.0 57 84.2
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.7e-22 109.0 57 80.7
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.7e-22 109.0 57 80.7
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.7e-22 109.0 57 80.7
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.7e-22 109.0 57 77.2
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.7e-22 109.0 56 82.1
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 1.7e-22 109.0 57 84.2
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 2.2e-22 108.6 56 82.1
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 2.9e-22 108.2 57 78.9
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 2.9e-22 108.2 57 80.7
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 3.8e-22 107.8 56 78.6
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 3.8e-22 107.8 56 82.1
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 3.8e-22 107.8 56 80.4
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 4.9e-22 107.5 57 80.7
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 4.9e-22 107.5 57 80.7
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 4.9e-22 107.5 57 80.7
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 4.9e-22 107.5 57 78.9
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 6.4e-22 107.1 57 78.9
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 6.4e-22 107.1 57 78.9
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 6.4e-22 107.1 69 66.7
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 8.4e-22 106.7 57 78.9
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 8.4e-22 106.7 57 77.2
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 1.1e-21 106.3 57 84.2
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 1.4e-21 105.9 57 78.9
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.4e-21 105.9 56 85.7
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 1.9e-21 105.5 57 80.7
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 1.9e-21 105.5 56 80.4
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 2.4e-21 105.1 65 69.2
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 2.4e-21 105.1 65 69.2
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 2.4e-21 105.1 57 75.4
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 3.2e-21 104.8 57 80.7
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 3.2e-21 104.8 57 80.7
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 3.2e-21 104.8 57 77.2
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 3.2e-21 104.8 49 100.0
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 3.2e-21 104.8 56 80.4
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 4.2e-21 104.4 65 67.7
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 5.4e-21 104.0 65 69.2
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 5.4e-21 104.0 57 78.9
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 7.1e-21 103.6 57 78.9
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 7.1e-21 103.6 52 82.7
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 7.1e-21 103.6 53 92.5
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 7.1e-21 103.6 56 82.1
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 9.3e-21 103.2 56 76.8
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 1.2e-20 102.8 56 76.8
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 1.6e-20 102.4 57 78.9
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 1.6e-20 102.4 57 77.2
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 2.7e-20 101.7 57 73.7
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 2.7e-20 101.7 57 77.2
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 3.5e-20 101.3 66 65.2
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.6e-20 100.9 69 65.2
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.0e-19 99.8 57 71.9
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 1.0e-19 99.8 57 71.9
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.7e-19 99.0 69 63.8
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 1.7e-19 99.0 57 77.2
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 2.3e-19 98.6 56 76.8
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.3e-19 98.6 57 70.2
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 3.9e-19 97.8 56 76.8
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 3.9e-19 97.8 57 73.7
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 5.1e-19 97.4 57 70.2
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 6.6e-19 97.1 57 75.4
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 8.7e-19 96.7 57 73.7
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 1.5e-18 95.9 56 73.2
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 2.5e-18 95.1 57 66.7
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 3.3e-18 94.7 55 74.5
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 9.6e-18 93.2 57 68.4
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 1.3e-17 92.8 52 71.2
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 1.3e-17 92.8 57 70.2
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 2.8e-17 91.7 57 66.7
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 1.4e-16 89.4 44 84.1
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 1.5e-15 85.9 53 69.8
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 4.5e-15 84.3 56 67.9
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.9e-13 79.0 50 68.0
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 9.3e-13 76.6 57 57.9
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 2.7e-12 75.1 58 56.9
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.3e-11 72.8 55 58.2
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 4.3e-10 67.8 50 62.0
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 2.1e-09 65.5 53 49.1
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 4.8e-09 64.3 56 48.2
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 1.5e-07 59.3 60 45.0
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 3.4e-07 58.2 57 42.1


User provided reference genes

Program Settings