Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1901 Fragaria x ananassa HOM05D003602 ORTHO05D020334 3.6e-71 271.6 146 100.0
FAN22G1715 Fragaria x ananassa HOM05D003602 ORTHO05D020334 1.2e-45 186.8 99 97.0
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 1.7e-31 139.8 103 70.9
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 2.2e-31 139.4 102 71.6
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.2e-31 139.4 102 71.6
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.2e-31 139.4 102 71.6
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.2e-31 139.4 102 71.6
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.8e-31 139.0 102 70.6
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.7e-31 138.7 102 71.6
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 1.4e-30 136.7 103 68.9
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.8e-30 136.3 102 68.6
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 9.1e-30 134.0 105 66.7
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 6.1e-26 121.3 103 59.2
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 7.9e-26 120.9 103 60.2
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 2.3e-25 119.4 103 60.2
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 3.0e-25 119.0 102 59.8
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 3.0e-25 119.0 103 60.2
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 3.0e-25 119.0 101 60.4
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 5.1e-25 118.2 103 59.2
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 6.7e-25 117.9 103 59.2
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 6.7e-25 117.9 103 58.3
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 8.8e-25 117.5 103 59.2
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 8.8e-25 117.5 103 59.2
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 8.8e-25 117.5 103 59.2
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 8.8e-25 117.5 103 58.3
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 1.1e-24 117.1 103 58.3
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 1.5e-24 116.7 103 59.2
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 2.0e-24 116.3 103 58.3
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 2.6e-24 115.9 103 56.3
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 2.6e-24 115.9 103 56.3
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 4.4e-24 115.2 103 55.3
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 5.7e-24 114.8 103 54.4
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 7.4e-24 114.4 103 56.3
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 7.4e-24 114.4 103 56.3
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 9.7e-24 114.0 103 55.3
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 9.7e-24 114.0 103 56.3
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 1.3e-23 113.6 103 55.3
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 1.3e-23 113.6 103 56.3
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 1.3e-23 113.6 103 56.3
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 1.7e-23 113.2 102 53.9
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 1.7e-23 113.2 101 58.4
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 2.2e-23 112.8 103 56.3
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 2.2e-23 112.8 103 55.3
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 2.8e-23 112.5 103 55.3
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 2.8e-23 112.5 106 58.5
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 3.7e-23 112.1 102 55.9
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 3.7e-23 112.1 103 55.3
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 3.7e-23 112.1 103 56.3
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 3.7e-23 112.1 103 56.3
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 4.8e-23 111.7 103 54.4
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 4.8e-23 111.7 103 53.4
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 4.8e-23 111.7 102 56.9
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 6.3e-23 111.3 104 57.7
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 8.2e-23 110.9 103 55.3
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 1.1e-22 110.5 103 53.4
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 1.4e-22 110.2 102 53.9
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 1.4e-22 110.2 102 54.9
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 1.4e-22 110.2 107 57.0
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 2.4e-22 109.4 103 54.4
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 2.4e-22 109.4 128 46.9
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 4.1e-22 108.6 103 51.5
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 4.1e-22 108.6 103 51.5
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 5.3e-22 108.2 103 56.3
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 5.3e-22 108.2 103 53.4
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 5.3e-22 108.2 102 53.9
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 5.3e-22 108.2 103 54.4
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 7.0e-22 107.8 103 50.5
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 9.1e-22 107.5 103 53.4
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 2.0e-21 106.3 103 52.4
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 2.0e-21 106.3 103 53.4
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 2.6e-21 105.9 103 52.4
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 5.9e-21 104.8 128 45.3
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 5.9e-21 104.8 106 50.0
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 7.7e-21 104.4 106 51.9
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 7.7e-21 104.4 103 52.4
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 1.0e-20 104.0 128 44.5
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 1.0e-20 104.0 102 52.0
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 1.0e-20 104.0 102 52.0
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 1.3e-20 103.6 128 45.3
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 1.3e-20 103.6 106 50.9
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 1.7e-20 103.2 103 52.4
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 1.7e-20 103.2 103 51.5
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 2.2e-20 102.8 101 55.4
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 3.8e-20 102.1 100 52.0
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 3.8e-20 102.1 100 51.0
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 3.8e-20 102.1 103 54.4
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 8.5e-20 100.9 102 52.9
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 8.5e-20 100.9 100 52.0
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 1.1e-19 100.5 100 50.0
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 1.1e-19 100.5 100 51.0
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 1.1e-19 100.5 125 44.0
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 1.4e-19 100.1 100 50.0
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 1.4e-19 100.1 100 50.0
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 2.5e-19 99.4 98 50.0
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 2.5e-19 99.4 100 50.0
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 3.2e-19 99.0 102 47.1
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 3.2e-19 99.0 102 47.1
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 3.2e-19 99.0 125 43.2
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 4.2e-19 98.6 98 49.0
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 4.2e-19 98.6 100 50.0
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 5.5e-19 98.2 147 44.9
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 7.2e-19 97.8 102 48.0
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 7.2e-19 97.8 100 50.0
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 1.2e-18 97.1 99 47.5
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 1.2e-18 97.1 128 43.8
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 2.7e-18 95.9 100 49.0
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 2.7e-18 95.9 101 48.5
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 2.7e-18 95.9 100 49.0
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 6.1e-18 94.7 100 46.0
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 6.1e-18 94.7 102 47.1
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 6.1e-18 94.7 99 51.5
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 8.0e-18 94.4 128 43.8
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 1.0e-17 94.0 100 46.0
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 1.0e-17 94.0 128 43.8
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 1.0e-17 94.0 128 43.8
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 1.4e-17 93.6 106 50.0
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 2.3e-17 92.8 106 49.1
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 3.0e-17 92.4 104 48.1
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 3.0e-17 92.4 105 49.5
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 5.2e-17 91.7 128 42.2
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 5.2e-17 91.7 128 42.2
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 5.7e-16 88.2 107 46.7
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 9.7e-16 87.4 108 49.1
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 1.3e-15 87.0 99 46.5
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 6.3e-15 84.7 100 47.0
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 8.2e-15 84.3 103 44.7
TAR375G0657 Trochodendron aralioides HOM05D003602 ORTHO05D004808 5.3e-14 81.6 67 56.7
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 2.0e-13 79.7 103 43.7
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 1.0e-12 77.4 98 43.9
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 1.9e-11 73.2 97 41.2
ECA247G2319 Erigeron canadensis HOM05D003602 ORTHO05D020334 3.2e-11 72.4 74 47.3
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 3.2e-11 72.4 97 40.2
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 4.2e-11 72.0 43 90.7
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 4.2e-11 72.0 43 90.7
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 9.4e-11 70.9 43 88.4
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 4.7e-10 68.6 103 35.9
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 1.8e-09 66.6 43 83.7
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.8e-09 66.6 43 83.7
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.8e-09 66.6 43 83.7
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 2.3e-09 66.2 68 52.9
Lj9C388T18 Lonicera japonica HOM05D003602 ORTHO05D020334 3.0e-09 65.9 68 50.0
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 2.2e-07 59.7 59 50.8
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 2.2e-07 59.7 100 34.0
CARHR124510 Cardamine hirsuta HOM05D003602 ORTHO05D020334 4.8e-07 58.5 67 44.8
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 4.8e-07 58.5 41 75.6
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 1.1e-06 57.4 42 71.4
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 1.8e-06 56.6 41 73.2
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 1.8e-06 56.6 43 69.8
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 2.4e-06 56.2 41 70.7
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 3.1e-06 55.8 41 73.2
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 5.3e-06 55.1 43 65.1
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 7.0e-06 54.7 41 68.3
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 9.1e-06 54.3 39 71.8


User provided reference genes

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