Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1840 Fragaria x ananassa HOM05D002324 ORTHO05D002380 9.5e-45 183.3 106 100.0
FAN17G2748 Fragaria x ananassa HOM05D002324 ORTHO05D002380 9.5e-45 183.3 106 100.0
FAN23G1032 Fragaria x ananassa HOM05D002324 ORTHO05D002380 9.5e-45 183.3 106 100.0
FAN27G2736 Fragaria x ananassa HOM05D002324 ORTHO05D002380 9.5e-45 183.3 106 100.0
FAN02G1225 Fragaria x ananassa HOM05D002324 ORTHO05D002380 2.1e-44 182.2 106 99.1
FAN12G0849 Fragaria x ananassa HOM05D002324 ORTHO05D002380 2.1e-44 182.2 106 99.1
FAN14G5940 Fragaria x ananassa HOM05D002324 ORTHO05D002380 2.1e-44 182.2 106 99.1
FAN16G2326 Fragaria x ananassa HOM05D002324 ORTHO05D002380 2.1e-44 182.2 106 99.1
FAN24G0476 Fragaria x ananassa HOM05D002324 ORTHO05D002380 2.1e-44 182.2 106 99.1
FAN24G1275 Fragaria x ananassa HOM05D002324 ORTHO05D002380 2.1e-44 182.2 106 99.1
FAN24G0968 Fragaria x ananassa HOM05D002324 ORTHO05D002380 1.8e-43 179.1 106 98.1
FAN06G2670 Fragaria x ananassa HOM05D002324 ORTHO05D002380 1.9e-21 105.9 103 73.8
FvH4_7g07180 Fragaria vesca HOM05D002324 ORTHO05D002380 8.1e-20 100.5 55 90.9
FAN01G2455 Fragaria x ananassa HOM05D002324 ORTHO05D002380 8.1e-20 100.5 55 90.9
FAN06G1671 Fragaria x ananassa HOM05D002324 ORTHO05D002380 8.1e-20 100.5 55 90.9
FAN09G2236 Fragaria x ananassa HOM05D002324 ORTHO05D002380 1.8e-19 99.4 80 72.5
FAN03G2450 Fragaria x ananassa HOM05D002324 ORTHO05D002380 3.1e-19 98.6 55 89.1
RcHm_v2.0_Chr1g0337201 Rosa chinensis HOM05D002324 ORTHO05D002380 7.5e-18 94.0 55 83.6
MD02G1239100 Malus domestica HOM05D002324 ORTHO05D002380 1.1e-16 90.1 55 80.0
Prupe.2G099200 Prunus persica HOM05D002324 ORTHO05D002380 9.2e-16 87.0 55 78.2
ClCG06G008170 Citrullus lanatus HOM05D002324 ORTHO05D002380 6.0e-15 84.3 55 72.7
MELO3C020376.2 Cucumis melo HOM05D002324 ORTHO05D002380 6.0e-15 84.3 55 72.7
CsaV3_2G010980 Cucumis sativus L. HOM05D002324 ORTHO05D002380 6.0e-15 84.3 55 72.7
Sed0022807 Sechium edule HOM05D002324 ORTHO05D002380 6.0e-15 84.3 55 72.7
Dinv43988 Davidia involucrata HOM05D002324 ORTHO05D002380 7.8e-15 84.0 55 72.7
FAN15G0232 Fragaria x ananassa HOM05D000865 ORTHO05D000739 7.8e-15 84.0 54 98.1
TWI34G0808 Tripterygium wilfordii HOM05D002324 ORTHO05D002380 1.7e-14 82.8 55 74.5
arahy.Tifrunner.gnm1.ann1.3F5NU3 Arachis hypogaea HOM05D002324 ORTHO05D002380 2.3e-14 82.4 55 69.1
arahy.Tifrunner.gnm1.ann1.V45EYT Arachis hypogaea HOM05D002324 ORTHO05D002380 2.3e-14 82.4 55 69.1
MD05G1272000 Malus domestica HOM05D002324 ORTHO05D002380 2.3e-14 82.4 56 75.0
QL04p052306 Quercus lobata HOM05D002324 ORTHO05D002380 3.0e-14 82.0 55 69.1
Glyma.03G097700 Glycine max HOM05D002324 ORTHO05D002380 3.9e-14 81.6 55 67.3
Glyma.07G123900 Glycine max HOM05D002324 ORTHO05D002380 3.9e-14 81.6 55 67.3
CiPaw.02G050200 Carya illinoinensis HOM05D002324 ORTHO05D002380 5.1e-14 81.3 50 78.0
TWI34G1886 Tripterygium wilfordii HOM05D002324 ORTHO05D002380 5.1e-14 81.3 74 59.5
CSS0019300 Camellia sinensis var. sinensis HOM05D002324 ORTHO05D002380 6.6e-14 80.9 50 78.0
CSS0050459 Camellia sinensis var. sinensis HOM05D002324 ORTHO05D002380 6.6e-14 80.9 50 78.0
Dinv43545 Davidia involucrata HOM05D002324 ORTHO05D002380 6.6e-14 80.9 55 69.1
VMungo0331G1349 Vigna mungo HOM05D002324 ORTHO05D002380 6.6e-14 80.9 55 67.3
Gohir.A13G158900 Gossypium hirsutum HOM05D002324 ORTHO05D002380 8.6e-14 80.5 54 70.4
Gohir.D13G164000 Gossypium hirsutum HOM05D002324 ORTHO05D002380 8.6e-14 80.5 54 70.4
Gorai.013G199200 Gossypium raimondii HOM05D002324 ORTHO05D002380 8.6e-14 80.5 54 70.4
Phvul.010G038300 Phaseolus vulgaris HOM05D002324 ORTHO05D002380 1.5e-13 79.7 55 65.5
Carub.0003s0272 Capsella rubella HOM05D002324 ORTHO05D002380 1.9e-13 79.3 55 65.5
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 1.9e-13 79.3 50 74.0
Hma1.2p1_0684F.1_g203020 Hydrangea macrophylla HOM05D002324 ORTHO05D002380 2.5e-13 79.0 55 69.1
vmacro21108 Vaccinium macrocarpon HOM05D002324 ORTHO05D002380 2.5e-13 79.0 55 67.3
Lj9A610G60 Lonicera japonica HOM05D002324 ORTHO05D002380 3.3e-13 78.6 55 67.3
RhsimUnG0128700 Rhododendron simsii HOM05D002324 ORTHO05D002380 3.3e-13 78.6 54 70.4
GSVIVG01026758001 Vitis vinifera HOM05D002324 ORTHO05D002380 3.3e-13 78.6 55 67.3
Cpa.g.sc73.81 Carica papaya HOM05D002324 ORTHO05D002380 4.3e-13 78.2 50 74.0
Ca_23150_v3 Cicer arietinum L. HOM05D002324 ORTHO05D002380 4.3e-13 78.2 55 67.3
Lalb_Chr07g0194791 Lupinus albus HOM05D002324 ORTHO05D002380 4.3e-13 78.2 55 65.5
Sp3g02550 Schrenkiella parvula HOM05D002324 ORTHO05D002380 4.3e-13 78.2 55 63.6
AL3G13330 Arabidopsis lyrata HOM05D002324 ORTHO05D002380 5.6e-13 77.8 55 63.6
AT3G03570 Arabidopsis thaliana HOM05D002324 ORTHO05D002380 5.6e-13 77.8 55 63.6
Manes.09G131900 Manihot esculenta HOM05D002324 ORTHO05D002380 5.6e-13 77.8 55 65.5
Thecc.05G231000 Theobroma cacao HOM05D002324 ORTHO05D002380 5.6e-13 77.8 53 69.8
Atru.chr2.1691 Acer truncatum HOM05D002324 ORTHO05D002380 7.3e-13 77.4 55 65.5
Thhalv10020333m.g Eutrema salsugineum HOM05D002324 ORTHO05D002380 7.3e-13 77.4 55 63.6
Lj3g0000441 Lotus japonicus HOM05D002324 ORTHO05D002380 7.3e-13 77.4 55 65.5
Peaxi162Scf00592g00116 Petunia axillaris HOM05D002324 ORTHO05D002380 7.3e-13 77.4 55 65.5
THA.LOC104827242 Tarenaya hassleriana HOM05D002324 ORTHO05D002380 7.3e-13 77.4 55 63.6
CANSAT78G1912 Cannabis sativa HOM05D002324 ORTHO05D002380 9.5e-13 77.0 52 71.2
Duzib128G1032 Durio zibethinus HOM05D002324 ORTHO05D002380 9.5e-13 77.0 53 69.8
Eucgr.E01773 Eucalyptus grandis HOM05D002324 ORTHO05D002380 9.5e-13 77.0 53 67.9
Actinidia05811 Actinidia chinensis HOM05D002324 ORTHO05D002380 1.2e-12 76.6 55 67.3
Aa31LG5G14070 Aethionema arabicum HOM05D002324 ORTHO05D002380 1.2e-12 76.6 55 63.6
COL.COLO4_08540 Corchorus olitorius HOM05D002324 ORTHO05D002380 1.2e-12 76.6 53 67.9
Nitab4.5_0009394g0020 Nicotiana tabacum HOM05D002324 ORTHO05D002380 1.2e-12 76.6 55 63.6
Migut.O00428 Erythranthe guttata HOM05D002324 ORTHO05D002380 1.6e-12 76.3 52 69.2
HanXRQChr06g0168721 Helianthus annuus HOM05D002324 ORTHO05D002380 1.6e-12 76.3 55 67.3
Actinidia30978 Actinidia chinensis HOM05D002324 ORTHO05D002380 2.1e-12 75.9 55 67.3
MSTRG.4982 Avicennia marina HOM05D002324 ORTHO05D002380 2.1e-12 75.9 55 65.5
BcaB04g19364 Brassica carinata HOM05D002324 ORTHO05D002380 2.1e-12 75.9 55 61.8
BcaC01g04397 Brassica carinata HOM05D002324 ORTHO05D002380 2.1e-12 75.9 55 61.8
A03p33330 Brassica napus HOM05D002324 ORTHO05D002380 2.1e-12 75.9 55 61.8
C03p40570 Brassica napus HOM05D002324 ORTHO05D002380 2.1e-12 75.9 55 61.8
BolC3t16322H Brassica oleracea HOM05D002324 ORTHO05D002380 2.1e-12 75.9 55 61.8
BraA03t12504Z Brassica rapa HOM05D002324 ORTHO05D002380 2.1e-12 75.9 55 61.8
CARHR077580 Cardamine hirsuta HOM05D002324 ORTHO05D002380 2.1e-12 75.9 55 61.8
ECA236G4499 Erigeron canadensis HOM05D002324 ORTHO05D002380 2.1e-12 75.9 52 71.2
Migut.N01692 Erythranthe guttata HOM05D002324 ORTHO05D002380 2.8e-12 75.5 55 63.6
Medtr8g009950 Medicago truncatula HOM05D002324 ORTHO05D002380 2.8e-12 75.5 49 71.4
Nitab4.5_0000592g0080 Nicotiana tabacum HOM05D002324 ORTHO05D002380 2.8e-12 75.5 55 61.8
PGR042G3784 Punica granatum HOM05D002324 ORTHO05D002380 2.8e-12 75.5 53 67.9
Ah.05g177350 Amaranthus hybridus HOM05D002324 ORTHO05D002380 3.6e-12 75.1 55 63.6
CAN.G700.19 Capsicum annuum HOM05D002324 ORTHO05D002380 3.6e-12 75.1 55 61.8
SalBow4G2111 Salvia bowleyana HOM05D002324 ORTHO05D002380 4.7e-12 74.7 55 63.6
SGA_v2.0_scaffold95G28756 Striga asiatica HOM05D002324 ORTHO05D002380 4.7e-12 74.7 55 61.8
AL1G61310 Arabidopsis lyrata HOM05D002324 ORTHO05D002380 6.2e-12 74.3 54 59.3
AUR62038003 Chenopodium quinoa HOM05D002324 ORTHO05D002380 6.2e-12 74.3 55 63.6
Oeu034872.3 Olea europaea HOM05D002324 ORTHO05D002380 6.2e-12 74.3 55 60.0
TPR.G780 Trifolium pratense HOM05D002324 ORTHO05D002380 8.1e-12 73.9 55 63.6
Lsat_1_v5_gn_1_84721 Lactuca sativa HOM05D002324 ORTHO05D002380 1.1e-11 73.6 55 65.5
Lsat_1_v5_gn_7_10760 Lactuca sativa HOM05D002324 ORTHO05D002380 1.1e-11 73.6 50 72.0
Solyc01g081030.4 Solanum lycopersicum HOM05D002324 ORTHO05D002380 1.1e-11 73.6 55 60.0
Sopen01g032610 Solanum pennellii HOM05D002324 ORTHO05D002380 1.1e-11 73.6 55 60.0
TPR.G17356 Trifolium pratense HOM05D002324 ORTHO05D002380 1.1e-11 73.6 49 69.4
Aqoxy3G02340 Aquilegia oxysepala HOM05D002324 ORTHO05D002380 2.3e-11 72.4 53 66.0
Ciclev10030972m.g Citrus clementina HOM05D002324 ORTHO05D002380 2.3e-11 72.4 55 61.8
TAR374G0314 Trochodendron aralioides HOM05D002324 ORTHO05D002380 2.3e-11 72.4 53 66.0
unitig_22.g6698 Utricularia gibba HOM05D002324 ORTHO05D002380 2.3e-11 72.4 55 61.8
EL10Ac1g00681 Beta vulgaris HOM05D002324 ORTHO05D002380 6.8e-11 70.9 55 61.8
MBI04_g23595_MAGBIO Magnolia biondii HOM05D002324 ORTHO05D002380 6.8e-11 70.9 53 60.4
Hund26929 Selenicereus undatus HOM05D002324 ORTHO05D002380 6.8e-11 70.9 55 60.0
DCAR_025011 Daucus carota HOM05D002324 ORTHO05D002380 8.9e-11 70.5 53 64.2
HanXRQChr01g0020551 Helianthus annuus HOM05D002324 ORTHO05D002380 8.9e-11 70.5 49 71.4
MBI04_g47988_MAGBIO Magnolia biondii HOM05D002324 ORTHO05D002380 8.9e-11 70.5 57 59.6
Cc02_g26200 Coffea canephora HOM05D002324 ORTHO05D002380 1.2e-10 70.1 55 56.4
SEGI_19766 Sequoiadendron giganteum HOM05D002324 ORTHO05D002380 1.2e-10 70.1 53 62.3
Potri.013G073200 Populus trichocarpa HOM05D002324 ORTHO05D002380 2.6e-10 68.9 55 60.0
Sabra13G0063300 Salix brachista HOM05D002324 ORTHO05D002380 3.4e-10 68.6 50 68.0
MD12G1051500 Malus domestica HOM05D002324 ORTHO05D002380 5.8e-10 67.8 50 72.0
ATR0684G109 Amborella trichopoda HOM05D002324 ORTHO05D002380 7.6e-10 67.4 48 66.7
HPP92_008976 Vanilla planifolia HOM05D002324 ORTHO05D002380 1.3e-09 66.6 49 65.3
CBR_g41707 Chara braunii HOM05D002324 ORTHO05D002380 1.7e-09 66.2 66 51.5
Nn1g00105 Nelumbo nucifera HOM05D002324 ORTHO05D002380 1.7e-09 66.2 53 62.3
Sed0004974 Sechium edule HOM05D002324 ORTHO05D002380 2.2e-09 65.9 50 64.0
PSO782G1184 Papaver somniferum HOM05D002324 ORTHO05D002380 4.9e-09 64.7 53 58.5
Pp3c11_20890 Physcomitrium patens HOM05D002324 ORTHO05D002380 2.4e-08 62.4 47 63.8
Pp3c21_16120 Physcomitrium patens HOM05D002324 ORTHO05D002380 3.2e-08 62.0 53 56.6
Pp3c22_11680 Physcomitrium patens HOM05D002324 ORTHO05D002380 4.1e-08 61.6 53 54.7
Mapoly0022s0165 Marchantia polymorpha HOM05D002324 ORTHO05D002380 5.4e-08 61.2 48 62.5
Pp3c7_5500 Physcomitrium patens HOM05D002324 ORTHO05D002380 2.1e-07 59.3 47 57.4
Sc26g0001960 Simmondsia chinensis HOM05D002324 ORTHO05D002380 2.1e-07 59.3 49 55.1
SMO367G0567 Selaginella moellendorffii HOM05D002324 ORTHO05D002380 4.6e-07 58.2 53 50.9
AagrBONN_evm.TU.Sc2ySwM_362.2677 Anthoceros agrestis HOM05D002324 ORTHO05D002380 6.0e-07 57.8 48 56.2
PSO541G0684 Papaver somniferum HOM05D002324 ORTHO05D002380 1.0e-06 57.0 53 52.8
PSO675G5704 Papaver somniferum HOM05D002324 ORTHO05D002380 1.0e-06 57.0 53 52.8
Pp3c18_9860 Physcomitrium patens HOM05D002324 ORTHO05D002380 1.0e-06 57.0 53 52.8
Ca_17761_v3 Cicer arietinum L. HOM05D002324 ORTHO05D002380 1.3e-06 56.6 48 56.2
Nn1g05453 Nelumbo nucifera HOM05D002324 ORTHO05D002380 1.7e-06 56.2 51 58.8
GSVIVG01003427001 Vitis vinifera HOM05D002324 ORTHO05D002380 1.7e-06 56.2 49 57.1
ATR0665G353 Amborella trichopoda HOM05D002324 ORTHO05D002380 2.3e-06 55.8 47 57.4
TAR376G0942 Trochodendron aralioides HOM05D002324 ORTHO05D002380 2.3e-06 55.8 48 56.2
FAN04G2390 Fragaria x ananassa HOM05D002324 ORTHO05D002380 3.0e-06 55.5 30 93.3
TAR628G1475 Trochodendron aralioides HOM05D002324 ORTHO05D002380 3.0e-06 55.5 48 58.3
TPR.G6279 Trifolium pratense HOM05D002324 ORTHO05D002380 3.9e-06 55.1 48 54.2
GSVIVG01003424001 Vitis vinifera HOM05D002324 ORTHO05D002380 3.9e-06 55.1 51 52.9
Psat7g056480 Pisum sativum HOM05D002324 ORTHO05D002380 5.1e-06 54.7 48 54.2
PRCOL_00002224 Prasinoderma coloniale HOM05D002324 ORTHO05D002380 5.1e-06 54.7 40 67.5
Medtr8g089935 Medicago truncatula HOM05D002324 ORTHO05D002380 6.6e-06 54.3 48 54.2
Duzib147G0146 Durio zibethinus HOM05D002324 ORTHO05D002380 8.6e-06 53.9 53 47.2
Duzib187G0684 Durio zibethinus HOM05D002324 ORTHO05D002380 8.6e-06 53.9 48 54.2
Prupe.6G192800 Prunus persica HOM05D002324 ORTHO05D002380 8.6e-06 53.9 53 49.1
Thecc.01G095800 Theobroma cacao HOM05D002324 ORTHO05D002380 8.6e-06 53.9 53 47.2


User provided reference genes

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