Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 9.4e-156 553.5 286 100.0
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 9.1e-151 537.0 287 97.6
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.5e-150 536.2 286 96.5
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.5e-150 534.6 286 96.5
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 2.5e-140 502.3 278 92.1
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 4.9e-112 408.3 299 72.6
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.7e-109 399.8 294 72.4
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 8.1e-107 391.0 283 72.4
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 3.1e-106 389.0 263 75.7
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.2e-105 387.1 276 73.2
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 2.6e-105 386.0 293 70.3
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.3e-104 383.6 265 73.2
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 1.7e-104 383.3 292 69.9
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 2.2e-104 382.9 291 70.4
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 8.3e-104 380.9 274 73.4
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 8.3e-104 380.9 283 71.4
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.4e-103 380.2 266 73.7
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.4e-103 380.2 254 75.6
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 1.9e-103 379.8 294 68.0
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 4.1e-103 378.6 278 71.2
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 7.1e-103 377.9 239 77.8
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 9.2e-103 377.5 294 68.0
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 9.2e-103 377.5 264 73.9
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.6e-102 376.7 284 69.4
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 2.1e-102 376.3 283 71.4
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 2.7e-102 375.9 252 74.2
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 3.5e-102 375.6 248 76.2
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 7.8e-102 374.4 245 75.5
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 7.8e-102 374.4 245 75.5
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.0e-101 374.0 282 72.0
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 5.1e-101 371.7 257 72.8
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 8.6e-101 370.9 298 67.4
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.5e-100 370.2 272 72.1
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 2.5e-100 369.4 267 71.5
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 3.3e-100 369.0 268 71.6
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 7.3e-100 367.9 253 73.9
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 7.3e-100 367.9 256 73.8
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.2e-99 367.1 281 70.5
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 1.2e-99 367.1 264 70.8
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.8e-99 365.9 287 67.6
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 4.7e-99 365.2 287 67.6
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 1.8e-98 363.2 281 70.1
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 1.8e-98 363.2 237 75.1
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 5.2e-98 361.7 255 71.8
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 5.2e-98 361.7 234 76.9
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 6.8e-98 361.3 282 68.4
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.5e-97 360.1 229 78.2
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 2.0e-97 359.8 310 64.2
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 2.6e-97 359.4 278 69.4
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 3.4e-97 359.0 282 69.5
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 9.9e-97 357.5 273 69.2
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 9.9e-97 357.5 265 69.4
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.7e-96 356.7 263 71.1
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 2.2e-96 356.3 240 72.5
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 4.9e-96 355.1 282 68.8
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 8.4e-96 354.4 259 71.8
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 1.4e-95 353.6 282 68.4
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 4.1e-95 352.1 276 65.6
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 5.4e-95 351.7 264 67.4
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 9.2e-95 350.9 272 69.9
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 9.2e-95 350.9 245 71.8
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.6e-94 350.1 282 66.3
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 2.1e-94 349.7 273 67.0
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 2.7e-94 349.4 289 67.5
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 7.8e-94 347.8 251 72.1
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.7e-93 346.7 286 63.6
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.7e-93 346.7 276 66.3
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 1.7e-93 346.7 283 66.1
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.3e-93 346.3 268 67.2
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 3.0e-93 345.9 241 71.4
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 3.0e-93 345.9 235 71.9
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 3.0e-93 345.9 332 59.3
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 5.1e-93 345.1 261 67.8
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 8.6e-93 344.4 247 68.4
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.1e-92 344.0 280 66.8
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.1e-92 344.0 260 67.7
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.1e-92 344.0 277 66.1
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.5e-92 343.6 256 68.8
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.9e-92 343.2 247 68.0
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 5.6e-92 341.7 278 64.4
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 1.2e-91 340.5 284 62.7
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 1.6e-91 340.1 266 66.9
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 2.1e-91 339.7 284 63.4
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.8e-91 339.3 219 75.3
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 2.8e-91 339.3 293 64.5
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 1.4e-90 337.0 266 66.2
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 4.0e-90 335.5 258 67.1
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 4.4e-89 332.0 244 66.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 8.4e-88 327.8 271 66.1
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 2.7e-86 322.8 278 62.6
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 2.3e-85 319.7 214 75.2
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.1e-84 317.4 260 63.8
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 4.8e-83 312.0 277 59.6
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 1.1e-82 310.8 261 65.9
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 1.4e-82 310.5 239 63.6
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 3.1e-82 309.3 256 66.0
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 3.1e-82 309.3 268 60.8
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 6.9e-82 308.1 236 69.1
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 9.0e-82 307.8 249 64.3
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.3e-80 303.9 204 75.0
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 6.0e-78 295.0 208 68.8
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.1e-76 290.8 276 57.2
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 2.9e-72 276.2 242 57.9
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.2e-70 270.8 262 56.9
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.6e-70 270.4 206 66.5
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.4e-66 256.5 190 71.1
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.4e-63 247.3 268 53.7
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 7.4e-60 235.0 147 78.2
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 7.7e-49 198.4 149 67.1
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.2e-46 191.0 218 48.2
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 3.6e-46 189.5 232 44.8
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 5.5e-39 165.6 214 40.7
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.1e-34 151.4 161 56.5
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 7.7e-33 145.2 86 81.4
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.7e-27 127.5 137 52.6
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.3e-24 117.9 67 88.1
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 2.1e-22 110.5 66 78.8
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 4.7e-22 109.4 111 56.8
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 6.1e-22 109.0 83 61.4
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.3e-19 101.3 56 83.9
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.7e-19 100.9 68 64.7
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 6.5e-16 89.0 63 69.8
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 6.5e-16 89.0 63 61.9
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.9e-15 87.4 137 43.8
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 1.2e-14 84.7 51 78.4
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.0e-13 81.6 49 77.6
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.0e-13 81.6 82 62.2
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 1.4e-13 81.3 170 36.5
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 2.6e-12 77.0 53 69.8
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 1.3e-11 74.7 47 74.5
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.3e-11 74.7 103 42.7
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 4.5e-09 66.2 43 72.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 1.6e-06 57.8 81 42.0
RcHm_v2.0_Chr1g0313101 Rosa chinensis HOM05D005950 ORTHO05D342078 3.6e-06 56.6 36 75.0


User provided reference genes

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