Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 7.7e-141 503.8 260 100.0
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 8.9e-113 410.6 215 98.1
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 1.6e-106 389.8 215 94.4
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.6e-106 389.8 215 94.4
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 6.2e-90 334.7 208 83.7
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 3.3e-75 285.8 208 72.6
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 2.1e-74 283.1 205 71.2
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 5.5e-70 268.5 200 67.5
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 2.1e-69 266.5 200 67.5
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 3.3e-67 259.2 200 67.0
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 6.9e-65 251.5 200 64.5
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 9.1e-65 251.1 201 63.2
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 2.9e-63 246.1 200 62.5
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 8.5e-63 244.6 206 61.7
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 1.9e-62 243.4 200 62.5
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 1.9e-62 243.4 189 64.0
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 6.1e-61 238.4 206 60.7
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 7.9e-61 238.0 196 60.7
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 1.0e-60 237.7 199 58.3
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 2.3e-60 236.5 195 61.5
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 2.3e-60 236.5 200 61.5
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 5.1e-60 235.3 195 62.6
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 5.1e-60 235.3 199 59.3
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 8.8e-60 234.6 200 60.0
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 2.0e-59 233.4 195 62.6
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 2.6e-59 233.0 199 57.3
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 5.7e-59 231.9 197 61.9
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 5.7e-59 231.9 196 59.2
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 7.4e-59 231.5 200 59.0
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 7.4e-59 231.5 200 59.5
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 4.1e-57 225.7 199 57.8
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 6.9e-57 224.9 200 57.0
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 2.0e-56 223.4 200 58.0
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 4.5e-56 222.2 199 55.8
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 2.2e-55 219.9 199 56.3
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 2.9e-55 219.5 200 57.0
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 3.8e-55 219.2 207 55.6
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 3.8e-55 219.2 200 56.5
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 8.5e-55 218.0 199 54.8
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 1.1e-54 217.6 200 56.0
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 3.2e-54 216.1 218 50.9
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 4.2e-54 215.7 199 54.8
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 5.5e-54 215.3 198 56.1
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 1.6e-53 213.8 199 57.3
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 2.1e-53 213.4 199 55.8
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 2.1e-53 213.4 199 55.3
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 3.6e-53 212.6 207 53.6
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 4.7e-53 212.2 257 47.1
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 7.9e-53 211.5 199 54.3
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 1.0e-52 211.1 209 53.6
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 1.4e-52 210.7 199 56.8
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 3.9e-52 209.1 209 52.6
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 5.2e-52 208.8 201 54.2
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 8.8e-52 208.0 202 51.5
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 8.8e-52 208.0 202 53.0
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 2.6e-51 206.5 212 51.4
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 3.3e-51 206.1 199 53.8
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 4.4e-51 205.7 207 53.6
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 4.4e-51 205.7 202 55.0
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 4.4e-51 205.7 194 54.6
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 5.7e-51 205.3 199 53.3
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 7.4e-51 204.9 212 52.8
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 7.4e-51 204.9 200 54.0
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 9.7e-51 204.5 199 54.3
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 9.7e-51 204.5 200 52.5
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 9.7e-51 204.5 199 55.3
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 4.8e-50 202.2 200 52.5
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 4.8e-50 202.2 200 52.5
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 4.8e-50 202.2 203 53.2
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 6.3e-50 201.8 188 55.3
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 3.1e-49 199.5 173 60.7
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 5.3e-49 198.7 199 52.3
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 1.2e-48 197.6 199 52.8
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 1.6e-48 197.2 199 51.3
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 2.0e-48 196.8 204 52.0
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 2.6e-48 196.4 196 51.5
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 3.5e-48 196.1 199 51.3
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 5.9e-48 195.3 199 51.8
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 7.7e-48 194.9 201 52.7
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 3.8e-47 192.6 199 51.8
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 6.5e-47 191.8 195 49.7
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 6.5e-47 191.8 196 51.0
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 5.5e-46 188.7 199 47.7
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 9.4e-46 188.0 199 52.3
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 2.1e-45 186.8 196 49.0
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 2.1e-45 186.8 201 51.7
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 2.1e-45 186.8 200 52.5
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 1.8e-44 183.7 196 45.9
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 1.8e-44 183.7 202 49.5
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 3.0e-44 183.0 219 47.9
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 4.0e-44 182.6 204 50.5
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 2.0e-43 180.3 199 46.2
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 2.6e-43 179.9 201 47.8
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 4.4e-43 179.1 196 49.0
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 1.1e-41 174.5 200 47.0
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 4.0e-36 156.0 209 42.1
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 4.0e-36 156.0 209 42.1
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 5.7e-35 152.1 199 45.7
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 5.7e-35 152.1 199 43.2
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 4.8e-34 149.1 183 44.3
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 1.8e-33 147.1 199 43.2
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 2.4e-33 146.7 120 64.2
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 1.1e-30 137.9 201 36.8
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 9.5e-30 134.8 120 58.3
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 1.7e-26 124.0 119 53.8
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 8.3e-26 121.7 121 50.4
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 9.2e-25 118.2 140 45.0
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 1.2e-24 117.9 140 44.3
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 1.0e-23 114.8 140 42.9
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 1.7e-23 114.0 111 48.6
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 5.6e-22 109.0 121 47.1
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 1.4e-20 104.4 121 44.6
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 5.2e-20 102.4 67 71.6
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 6.8e-20 102.1 67 71.6
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 4.4e-19 99.4 139 41.0
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 7.0e-17 92.0 199 32.7
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 7.8e-16 88.6 112 43.8
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 1.2e-11 74.7 65 50.8
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 6.0e-08 62.4 89 42.7
Peaxi162Scf00255g00049 Petunia axillaris HOM05D006244 ORTHO05D007401 3.9e-07 59.7 78 41.0
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 4.3e-06 56.2 50 60.0


User provided reference genes

Program Settings