Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 2112.8 1064 100.0
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1996.1 1078 94.1
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1916.0 1064 91.7
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1832.0 983 93.3
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1807.7 1062 86.3
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 0.0e+00 1616.7 903 92.2
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1582.0 1074 74.8
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1361.3 1066 64.4
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1351.3 1065 64.3
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1334.3 1067 63.5
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1224.5 1103 58.8
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1219.9 1018 60.8
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1192.2 984 61.4
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1192.2 1075 58.3
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1181.8 1037 58.8
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1179.9 1027 59.7
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1179.9 1027 59.7
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1178.7 1067 57.8
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1178.7 991 60.7
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1175.2 990 60.6
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1174.1 976 60.6
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1173.7 1028 58.9
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1172.5 1040 57.4
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1160.2 961 60.5
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1160.2 1038 58.6
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1159.1 1026 58.8
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1157.5 1072 56.7
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1157.1 1071 56.2
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1154.8 1075 55.8
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1151.7 962 58.9
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1151.3 965 60.8
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1150.2 962 59.1
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1147.5 1044 57.2
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1139.4 1061 55.2
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1128.6 950 60.2
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1122.5 1075 54.9
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1108.2 1021 56.3
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1105.5 1055 53.4
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1094.3 980 57.3
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1082.4 1073 52.8
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1077.4 980 56.6
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 4.2e-310 1068.1 971 55.9
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 3.6e-309 1065.1 987 56.0
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.4e-308 1063.1 1057 51.9
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 4.1e-305 1051.6 1063 51.6
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 1.7e-303 1046.2 1061 51.9
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 2.9e-303 1045.4 960 55.4
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 1.5e-299 1033.1 958 55.0
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.3e-298 1030.0 1058 50.4
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.7e-298 1029.6 1095 49.6
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 1.8e-297 1026.2 998 53.5
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 5.3e-297 1024.6 798 64.5
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 1.6e-293 1013.1 993 53.0
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 8.8e-292 1007.3 1044 51.3
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 2.0e-291 1006.1 1069 50.0
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 1.4e-289 1000.0 960 53.8
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 1.4e-289 1000.0 1067 50.3
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 1.4e-289 1000.0 963 52.2
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 9.1e-289 997.3 1060 49.2
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 8.6e-287 990.7 1070 48.8
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 8.6e-287 990.7 1062 49.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 4.2e-286 988.4 1069 48.5
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 1.4e-284 983.4 1021 51.4
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.8e-284 983.0 788 61.5
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 5.7e-283 978.0 957 53.2
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 8.3e-282 974.2 929 53.5
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 2.4e-281 972.6 1019 50.9
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 4.1e-281 971.8 1010 51.5
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 1.2e-280 970.3 1015 50.9
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 7.8e-280 967.6 1013 50.8
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.7e-279 966.5 928 53.7
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 3.3e-278 962.2 912 55.4
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 5.6e-278 961.4 959 50.9
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 1.6e-277 959.9 992 50.2
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.4e-276 956.8 960 51.8
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 1.7e-274 949.9 925 52.9
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 6.4e-274 948.0 957 50.3
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 7.8e-264 914.4 964 49.5
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 3.4e-259 899.0 781 60.2
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 1.0e-255 887.5 798 57.4
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 1.5e-251 873.6 999 47.5
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 9.9e-243 844.3 1053 44.6
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.7e-242 843.6 1040 44.7
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 2.7e-240 836.3 1109 42.5
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 3.3e-238 829.3 932 48.3
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 6.0e-232 808.5 1119 43.2
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 6.7e-223 778.5 714 56.0
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.9e-222 776.9 641 60.1
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 2.0e-219 766.9 951 42.6
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 3.1e-212 743.0 721 51.9
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.9e-207 726.1 551 65.3
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 3.3e-206 723.0 652 57.2
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 4.2e-201 706.1 588 60.2
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 4.7e-192 676.0 1003 40.4
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 6.7e-191 672.2 1044 38.4
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 2.2e-165 587.4 616 49.4
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.8e-165 587.0 674 45.8
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.9e-137 494.6 422 59.0
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.3e-128 465.3 416 60.6
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 1.7e-122 444.9 366 60.7
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 3.1e-111 407.5 409 52.3
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 7.4e-81 306.6 248 58.9
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 3.7e-80 304.3 220 65.0
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 6.5e-77 293.5 220 61.8
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.6e-73 281.6 933 26.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.3e-72 279.3 222 59.5
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 9.1e-63 246.5 347 40.1
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 6.5e-61 240.4 207 58.0
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.5e-60 239.2 191 61.8
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.4e-57 227.6 890 25.2
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.7e-57 227.3 191 58.6
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 8.3e-56 223.4 191 58.1
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 5.9e-54 217.2 171 62.0
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 5.7e-49 200.7 160 58.8
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 3.6e-43 181.4 127 67.7
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 4.9e-40 171.0 156 53.8
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.3e-37 162.9 165 49.1
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.2e-35 156.4 1012 22.7
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 1.2e-35 156.4 207 40.1
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 8.1e-35 153.7 465 23.4
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 2.9e-32 145.2 128 58.6
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.5e-30 138.3 116 54.3
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 7.8e-30 137.1 131 49.6
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.8e-30 137.1 489 24.9
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.1e-28 133.3 135 50.4
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.1e-26 126.7 98 55.1
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.9e-24 118.6 946 22.5
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 3.2e-23 115.2 94 59.6
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 1.0e-21 110.2 84 61.9
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 1.7e-16 92.8 97 43.3
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 4.2e-15 88.2 71 62.0
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.5e-14 85.1 168 32.1
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.0e-13 83.6 242 25.2
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 1.0e-13 83.6 62 62.9
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 3.0e-13 82.0 62 61.3
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.3e-12 78.2 100 40.0
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.6e-11 76.3 236 26.3
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 3.6e-11 75.1 57 59.6
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 1.7e-08 66.2 39 76.9
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 3.8e-08 65.1 86 44.2
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 2.4e-07 62.4 65 52.3
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.2e-07 62.0 219 25.1
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 7.1e-07 60.8 46 56.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.1e-06 59.3 46 56.5
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.7e-06 58.9 74 44.6


User provided reference genes

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