Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1640 Fragaria x ananassa HOM05D003448 ORTHO05D004028 1.0e-54 216.5 109 100.0
FAN22G1572 Fragaria x ananassa HOM05D003448 ORTHO05D004028 3.0e-54 214.9 109 99.1
FAN07G2405 Fragaria x ananassa HOM05D003448 ORTHO05D004028 7.4e-53 210.3 109 96.3
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 3.1e-51 204.9 109 96.3
FAN12G3596 Fragaria x ananassa HOM05D003448 ORTHO05D004028 4.8e-44 181.0 101 91.1
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 7.0e-35 150.6 115 70.4
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 4.4e-29 131.3 112 64.3
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 7.5e-29 130.6 116 60.3
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 9.1e-27 123.6 114 56.1
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 5.9e-26 120.9 110 60.9
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 7.2e-24 114.0 112 57.1
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 2.1e-23 112.5 117 52.1
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 3.6e-23 111.7 106 57.5
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 3.6e-23 111.7 106 57.5
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 6.1e-23 110.9 115 56.5
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 6.1e-23 110.9 114 55.3
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 8.0e-23 110.5 111 56.8
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 1.0e-22 110.2 114 51.8
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 1.4e-22 109.8 107 54.2
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 2.3e-22 109.0 115 52.2
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 3.0e-22 108.6 115 56.5
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 8.9e-22 107.1 109 56.9
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 1.5e-21 106.3 106 58.5
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 1.5e-21 106.3 112 53.6
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.0e-21 105.9 109 55.0
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 3.4e-21 105.1 111 53.2
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 3.4e-21 105.1 113 53.1
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 4.4e-21 104.8 111 55.0
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 4.4e-21 104.8 109 50.5
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 5.7e-21 104.4 112 55.4
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 7.5e-21 104.0 112 54.5
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 7.5e-21 104.0 115 53.9
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 7.5e-21 104.0 114 55.3
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 9.8e-21 103.6 109 49.5
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 9.8e-21 103.6 109 49.5
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 1.3e-20 103.2 115 49.6
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 1.7e-20 102.8 114 54.4
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 2.2e-20 102.4 110 50.9
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 2.2e-20 102.4 113 54.9
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.8e-20 102.1 114 50.9
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 3.7e-20 101.7 111 51.4
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 3.7e-20 101.7 111 51.4
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 3.7e-20 101.7 116 49.1
COL.COLO4_27958 Corchorus olitorius HOM05D003448 ORTHO05D004028 4.9e-20 101.3 99 54.5
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 4.9e-20 101.3 118 50.0
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 1.1e-19 100.1 114 50.9
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 1.1e-19 100.1 108 50.9
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 1.4e-19 99.8 115 50.4
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 1.4e-19 99.8 109 47.7
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 1.8e-19 99.4 112 52.7
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 2.4e-19 99.0 111 53.2
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 2.4e-19 99.0 107 53.3
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 3.1e-19 98.6 111 51.4
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 4.1e-19 98.2 113 53.1
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 5.4e-19 97.8 110 50.0
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 5.4e-19 97.8 115 47.8
Gohir.A03G102650 Gossypium hirsutum HOM05D003448 ORTHO05D004028 7.0e-19 97.4 99 52.5
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 1.2e-18 96.7 110 47.3
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.0e-18 95.9 111 55.0
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.0e-18 95.9 110 55.5
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 2.7e-18 95.5 111 54.1
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 2.7e-18 95.5 114 49.1
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 2.7e-18 95.5 114 49.1
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 3.5e-18 95.1 114 49.1
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 3.5e-18 95.1 114 49.1
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 3.5e-18 95.1 111 48.6
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 3.5e-18 95.1 112 53.6
SalBow1G1885 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.5e-18 95.1 110 54.5
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.5e-18 95.1 110 54.5
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 4.5e-18 94.7 108 50.0
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 5.9e-18 94.4 116 44.8
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 5.9e-18 94.4 109 50.5
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 5.9e-18 94.4 109 50.5
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.7e-17 92.8 111 51.4
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.7e-17 92.8 107 51.4
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.3e-17 92.4 112 50.9
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 5.0e-17 91.3 107 53.3
TAR629G0321 Trochodendron aralioides HOM05D003448 ORTHO05D004028 8.6e-17 90.5 108 50.9
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 1.5e-16 89.7 115 47.0
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 1.5e-16 89.7 111 44.1
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 1.9e-16 89.4 107 46.7
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.9e-16 89.4 107 47.7
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 3.3e-16 88.6 112 46.4
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 5.6e-16 87.8 111 46.8
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 5.6e-16 87.8 111 46.8
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 7.3e-16 87.4 109 50.5
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 2.8e-15 85.5 115 48.7
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 3.6e-15 85.1 111 49.5
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 4.7e-15 84.7 110 45.5
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 1.0e-14 83.6 105 48.6
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.4e-14 83.2 116 44.0
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 4.0e-14 81.6 96 46.9
SalBow8G2290 Salvia bowleyana HOM05D003448 ORTHO05D004028 6.8e-14 80.9 99 52.5
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.4e-13 78.6 110 43.6
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 3.4e-13 78.6 104 47.1
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 9.8e-13 77.0 104 39.4
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 1.3e-12 76.6 104 40.4
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 2.2e-12 75.9 107 43.0
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 2.9e-12 75.5 104 44.2
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 6.4e-12 74.3 113 44.2
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 6.4e-12 74.3 112 42.0
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.1e-11 73.6 112 42.0
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 1.1e-11 73.6 97 46.4
Hma1.2p1_0261F.1_g104800 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.1e-11 73.6 60 63.3
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.4e-11 73.2 102 48.0
Os12g0257500 Oryza sativa ssp. japonica HOM05D003448 ORTHO05D004028 1.9e-11 72.8 113 43.4
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 4.1e-11 71.6 109 41.3
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 7.0e-11 70.9 112 39.3
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 7.0e-11 70.9 117 44.4
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 3.5e-10 68.6 41 75.6
Zm00001eb408540 Zea mays HOM05D003448 ORTHO05D004028 4.6e-10 68.2 103 42.7
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 1.7e-09 66.2 100 42.0
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 3.9e-09 65.1 108 41.7
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 6.6e-09 64.3 100 38.0
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.9e-08 62.8 110 37.3
ECA233G3599 Erigeron canadensis HOM05D003448 ORTHO05D004028 2.5e-08 62.4 60 51.7
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 1.2e-07 60.1 116 37.1
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.6e-07 59.7 110 37.3
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 2.8e-07 58.9 98 35.7
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 6.2e-07 57.8 114 36.8
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 2.3e-06 55.8 108 35.2
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 2.3e-06 55.8 111 38.7
Nitab4.5_0005448g0040 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.1e-06 55.5 39 71.8
Cc00_g19080 Coffea canephora HOM05D004170 ORTHO05D005976 5.2e-06 54.7 35 74.3
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.8e-06 54.3 107 33.6


User provided reference genes

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